mRNA_P-littoralis_Contig77.23.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig77.23.1 vs. uniprot
Match: A0A6H5KQI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQI8_9PHAE) HSP 1 Score: 1326 bits (3432), Expect = 0.000e+0 Identity = 755/1297 (58.21%), Postives = 896/1297 (69.08%), Query Frame = 1
Query: 25 VRESTAARDKAYLEGTGVSSLIQDFFDELFELEELPDNPHPDLVRRFRIAESARGLFRSLEDDVKASAGMENKVATSPELSGVTYVEGSRRVWGMPHMLRMVDTAHLHEMGAVLNANEACLRADAHEIE-RQSENSHVNVWVALTGPAALAGRLCTEFWAEIHLEAGVEITAKTYHLAIDLFAETILVEAKGCQGSNQLLLRRVVIDFPLRRVMQSFNGGERTEWTPRQLHDTPDAFISQIKTSLPFRPSVTMEYLFLSPSGSHRTVGGPIMSIRRSYTMHHQNSTKAKRSSSRWPFRSLYGGVFLSGAEAKHYGNYFRVLQGKSFAVEGIAGAKELLAENVERAREVGDTLGVHVSLLPLALLSGVNGDEALA-ARAVVDVSRVTKSAAARHRSLRNLCDSIQFILGSVAEWAQALEPILRWEDSNPV----DTDSDASENGGQWNPKTRCRSPQDLLQTWLRTAHLFFWRWRCEVLRYLDADYHSDVAVVKSKVKAWIEEISSSARMGLRLPVLRWHEHGRTIADGKRAFVNAVTVIRQRLSSLSAWLHCLDLSLAWDAAKVCGRVHVRHLEEQGKI-EIAPQGGWPHLLGFHLSSNVERTQENSLSLPTTVGLLQLQRDWLDNLVAAAHIRDRDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXEKASGVRYVPAPITPGSSRTPEGVNVRQAVVRTLREDVVPEAFAHEISLMKYAVDTKIDKSLHDSIYRVLTSVLMPNPFPLLTDALAVSSTSLTLSQTTDSEE-AGPPAAVKLVE--GCKCREVFLATGTRKDAACVYGSKPALTDVDADVALSLFDVLPPVAGWVLDTLGGSCADIDVGIFGCAQRYGSYV-HHALPSDLTVMVACACDFDLSSNATPMEYFARCAVHCATTAH-KKSALSVFGLTARVSSEDDIAASRSE---GTSAPQPFSLQQVLSEPEEVEVELAYLKPEEIVLEALVPFPISTGGGEG--LVPLSIRLILATSGCADGDDVGGCSQALADSMLYECVYSTATAAENAAARHAVLTGGSDLSE--SHVKRTRRRVLDKVDSRDYLEAYRLVHCLRCLQ-VAVPEDEEGVPTAAATTPESE---ADPSGGKVEHTVSSKNAWKIPLDSWAAGTESRVVGVATEIKRMTRGPAGRIHHARRLFEVMRKVLSKTTLQSAMVVEWITVGE---HAAYCTSYLLDTLAEQPLARFEGAVQSINLRSRLLVDRVADIAGNEGLRGKAGATR----GADGTMAVAYDLASAVASMLEIVQLSVESDTHRCCPEIDRVFEYIRA 3825
VRE A RDKAYLE G+SSLIQ FFD+LF+ EELP NP+P+LVRRFRIAESA+GLFRS+ DD K +AGM N VATSPELSGVTYV+GSR +WGMPHMLRM D AHL M AV+N NE CLR DAHE++ R ++ HVNV VALTGPAALAGRL KG +G GERT WTP QLHDT DAFIS IKTS+PFRPSVTM YLFLSP+ +HR VGGPIMSI+RSYTMHH++S+K+ S + PFRSLYGG+FLSGAEAKHYG FR +QG SFAVEG+AGAKE LAENVERAREVGDTLGVH SL+PLALLSGVN + A A+AVVDVSRVTKSAAARHRS R LCD I ILG + W + +PIL+WE V D DS E+ GQW+PKTRC S +DL+QTWLRT H FW WRC++LRYLD D HSDV VVK K + W+EEIS +ARMGLRLP+LRWH+HGRTIADG+ F+ A + R+RLS +SAWLHCLDLSL+WDAAKVC VH RHLEE+ K ++APQGGW HLLGF L+S+ +E LSLPTT GLLQLQR WLD+ VAAAH+RD + SGVRYVPAP TP S+R P+ V VR AVV TLRED VPE FAHEI+LMKYA D +IDKSLHDSI VLTSVL PNPFP LTD+LA+SS +T DSEE A A KLV G + +VF+A GTR +A +YGSKPAL DVD + A SLF VLPP+AGWVLD LG D+DVGI G A+ +GS H A+PS +TVM+ACAC DL S TPMEYF RCAVHCA+ AH S L V GLTAR + ED++AA E +A Q FSL+Q+L +P EVE ELA+L P E+VLEA +PF I T + LVPLSIR +L TS +G GCS+ALA +M Y+CVYSTA AAE AAARH+ +T S +S ++VKRTRR VLD++D R+YLEAYRLVH LR L+ V +PE+E+ + AT PE + + +G + + V+ NAWK+P DS VA+ I+ M RGP+GR+ HARRL V+R+++ + + V+E + GE HA YCTSYLLDTLAEQP RFEGAV+SI LR+RLL+DRVA++AG R GATR GAD T A DLA+AV SML+IVQL+ ESDTHRCCPE++R + RA
Sbjct: 18 VREDVAVRDKAYLEEKGISSLIQGFFDDLFQREELPANPYPELVRRFRIAESAQGLFRSIHDDAKVAAGMLNNVATSPELSGVTYVQGSRGIWGMPHMLRMADVAHLEVMAAVVNENEQCLRVDAHELDDRHGDDCHVNVCVALTGPAALAGRL---------------------------------FRYKGMKG------------------------GERTVWTPVQLHDTADAFISYIKTSVPFRPSVTMSYLFLSPASAHRAVGGPIMSIQRSYTMHHRSSSKSSLSVTNRPFRSLYGGLFLSGAEAKHYGELFR-MQGLSFAVEGVAGAKEYLAENVERAREVGDTLGVHSSLMPLALLSGVNDEGVSAGAQAVVDVSRVTKSAAARHRSRRTLCDHILLILGMLVGWVRGSQPILKWEGGGGVIYLDDGDSQDDESDGQWHPKTRCGSSKDLVQTWLRTTHQLFWGWRCDLLRYLDEDRHSDVVVVKDKARRWMEEISDAARMGLRLPMLRWHDHGRTIADGRSGFLKAAALARRRLSGVSAWLHCLDLSLSWDAAKVCDGVHARHLEEKRKKGDVAPQGGWSHLLGFQLASHGGHVRETGLSLPTTAGLLQLQRGWLDDAVAAAHVRDSEGTKESGGKRIVGRRKNRTAASPTPAAVEAALTSGVRYVPAPATPDSTRAPKAVKVRLAVVETLREDAVPEVFAHEITLMKYAADNRIDKSLHDSISEVLTSVLAPNPFPALTDSLALSSILHVFRRTVDSEEDAIQSGAPKLVAHAGEEGSQVFVAHGTRNGSARIYGSKPALEDVDVEGASSLFGVLPPIAGWVLDGLGDRWTDVDVGISGFARYHGSQAGHDAVPSYVTVMLACACSLDLDSGTTPMEYFTRCAVHCASAAHTNNSGLLVVGLTARTAPEDNLAAPPLEEAAALNAGQFFSLKQILDDPAEVEDELAHLHPGEMVLEAFMPFTIPTAAAKDFVLVPLSIRFVLLTSDHGEG----GCSEALAAAMFYDCVYSTAKAAERAAARHSAVTNESGISVGINYVKRTRRLVLDRIDRREYLEAYRLVHHLRALRSVELPEEEDAQKSVPAT-PEPDIGGSSQNGEQHDECVTRNNAWKLPEDSVPPPDPDIEEAVASAIRHMLRGPSGRLDHARRLLGVLRRLVERENF-APEVIELLEEGELRKHAVYCTSYLLDTLAEQPPVRFEGAVESIKLRARLLLDRVAEMAGPG--RVSKGATRAAAAGADATREAACDLAAAVTSMLDIVQLAAESDTHRCCPEMERAIKRYRA 1248
BLAST of mRNA_P-littoralis_Contig77.23.1 vs. uniprot
Match: D7G6Y1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y1_ECTSI) HSP 1 Score: 1187 bits (3072), Expect = 0.000e+0 Identity = 682/1160 (58.79%), Postives = 816/1160 (70.34%), Query Frame = 1
Query: 490 EFWAEIHLEAGVEITAKTYHLAIDLFAETILVEAKGCQGSNQLLLRRVVIDFPLRRVMQSFNGGERTEWTPRQLHDTPDAFISQIKTSLPFRPSVTMEYLFLSPSGSHRTVGGPIMSIRRSYTMHHQNSTKAKRSSSRWPFRSLYGGVFLSGAEAKHYGNYFRVLQGKSFAVEGIAGAKELLAENVERAREVGDTLGVHVSLLPLALLSGVNGDEALAA--RAVVDVSRVTKSAAARHRSLRNLCDSIQFILGSVAEWAQALEPILRWEDSNPV----DTDSDASENGGQWNPKTRCRSPQDLLQTWLRTAHLFFWRWRCEVLRYLDADYHSDVAVVKSKVKAWIEEISSSARMGLRLPVLRWHEHGRTIADGKRAFVNAVTVIRQRLSSLSAWLHCLDLSLAWDAAKVCGRVHVRHLEEQGKI-EIAPQGGWPHLLGFHLSSNVERTQENSLSLPTTVGLLQLQRDWLDNLVAAAHIRDRDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXEKASGVRYVPAPITPGSSRTPEGVNVRQAVVRTLREDVVPEAFAHEISLMKYAVDTKIDKSLHDSIYRVLTSVLMPNPFPLLTDALAVSSTSLTLSQTTDSEE----AGPPAAVKLVEGCKCREVFLATGTRKDAACVYGSKPALTDVDADVALSLFDVLPPVAGWVLDTLGGSCADIDVGIFGCAQRYGSYV-HHALPSDLTVMVACACDFDLSSNATPMEYFARCAVHCATTAH-KKSALSVFGLTARVSSEDDIAA---SRSEGTSAPQPFSLQQVLSEPEEVEVELAYLKPEEIVLEALVPFPISTGGGEG--LVPLSIRLILATSGCADGDDVGGCSQALADSMLYECVYSTATAAENAAARHAVLTGGSDL--SESHVKRTRRRVLDKVDSRDYLEAYRLVHCLRCLQVAVPEDEEGVPTAAATTPESEADPSGGKVEHT--VSSKNAWKIPLDSWAAGTESRVVGVATEIKRMTRGPAGRIHHARRLFEVMRKVLSKTTL--QSAMVVEWITVGEHAAYCTSYLLDTLAEQPLARFEGAVQSINLRSRLLVDRVADIAGNEGLRGKAGATR----GADGTMAVAYDLASAVASMLEIVQLSVESDTHRCCPEIDRVFEYIRATSDNKTGNTTSNAVRRGGRR 3885
E WAE+ L A VE+ A ++ LA+ +FAETILVEAKGCQGS QL+L RVVIDFPLR + GGERT WTP QLHDTPDAFIS IKTS+PFRPSVTM YLFLSP+ +HR VGGPIMSI+RSYTMHH++S+K+ S + PFRSLYGG+FLSGAEAKHYG FR +QG SF VEG+AGAKE LAENVERAREVGDTLGVH SL+PLALLSGVN DE ++A +AVVD+SRVTKSAAARHRS RNLCD I ILG + W + +PIL+WE V D DS E+ GQW+PKTRC S +DL+QTWLRT H FW WRC++LRYLD D HSDV VVK K + W+EEIS +ARMGL+LP+LRWH+HGRTIADGK F+ A ++R+RLS +VC VH RHLEE+ K ++APQGGWPHLLGF L+S+ +E LSLPTT GLLQLQR WLD+ VAAAH+RD +A XXXXXXXXXXXXX SGVRYVPAP TP S+R P+ V VR AVV TLRED +PE FAHEI+LMKYA D +IDKSLHDSI VLTSVL PNPFP+LTD+LAVSS S +T DSEE +G P V + +VF+A GTR +A +YGSKPAL DVD + A +LF VLPP+AGWVLD LGGS D+DVGI G A+ +GS HHA+PS++TVM+ACAC FDL S TPMEYF RCAVHCA+ AH S L V GLTAR + ED++AA + A Q FSL Q+L +PEEVE ELA+L P EIVLEA +PF I T + +VPLSIR +L TS D GCS+ALA +M Y+CVYSTA AAE AAARH+ + S L ++VKRTRR VLD++D R+YLEAYRLVH LR L+ +E+ + ATTPE + S EH VS AWK+P DS A I+RM RGP+GR+ HARRL +V+R+++ + L ++ ++E + EHA YCTSYLLDTLAEQP RFEGAV+SI LR+RLL+DRV ++AG G+ GATR GAD T A DLA+AV SML+IVQL+ ESDTHRCCPE++R + RAT +R GRR
Sbjct: 4 ESWAEVQLAASVEVVALSFELAVQIFAETILVEAKGCQGSTQLILERVVIDFPLR--YKGMKGGERTVWTPVQLHDTPDAFISHIKTSIPFRPSVTMTYLFLSPASAHRAVGGPIMSIQRSYTMHHRSSSKSSLSMTNRPFRSLYGGLFLSGAEAKHYGELFR-MQGLSFTVEGVAGAKEHLAENVERAREVGDTLGVHSSLMPLALLSGVN-DEGVSAGSQAVVDLSRVTKSAAARHRSRRNLCDHILLILGMLVGWVRGSQPILKWEGGGGVIYLDDGDSQDDESDGQWHPKTRCGSSKDLVQTWLRTTHQLFWGWRCDLLRYLDEDRHSDVVVVKDKARGWMEEISDAARMGLKLPMLRWHDHGRTIADGKSGFLKAAALVRRRLS------------------EVCDGVHERHLEEKRKKGDVAPQGGWPHLLGFQLASHGGHARETGLSLPTTAGLLQLQRGWLDDAVAAAHVRDSEAIKESGGKRIVGRXXXXXXXXXXXXXVEAALTSGVRYVPAPATPDSARAPKAVEVRLAVVETLREDTIPEVFAHEITLMKYAADNRIDKSLHDSISEVLTSVLAPNPFPVLTDSLAVSSISHVFRRTVDSEEDAIQSGAPKLVVHAGEEEGSQVFVAHGTRNGSASIYGSKPALEDVDVEGASTLFGVLPPIAGWVLDGLGGSWTDVDVGISGFARYHGSQAAHHAVPSNVTVMLACACSFDLDSGTTPMEYFTRCAVHCASAAHTNNSGLLVVGLTARTAPEDNLAAPPWEEAAALDAGQFFSLMQILDDPEEVEDELAHLHPGEIVLEAFMPFLIPTAAAKDFVVVPLSIRFLLLTSDHGDS----GCSEALAAAMFYDCVYSTAKAAERAAARHSAVLNESGLPAGRNYVKRTRRLVLDRIDRREYLEAYRLVHHLRALRSVELPEEDAQKSVPATTPEPDIGGSSQNGEHNEYVSRNRAWKLPEDSIPPPDPDGEEAEARAIRRMLRGPSGRLDHARRLLDVLRRLVERENLAPETIGLLEEGELREHAVYCTSYLLDTLAEQPPVRFEGAVESIKLRARLLLDRVVEMAGPRGV--SKGATRAAAAGADATREAACDLAAAVTSMLDIVQLAAESDTHRCCPEMERAIKRYRATDKRNEEELPPLGTKRSGRR 1135
BLAST of mRNA_P-littoralis_Contig77.23.1 vs. uniprot
Match: D7G6Y2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y2_ECTSI) HSP 1 Score: 227 bits (579), Expect = 6.440e-65 Identity = 113/162 (69.75%), Postives = 131/162 (80.86%), Query Frame = 1
Query: 1 EKERGDMSVRESTAARDKAYLEGTGVSSLIQDFFDELFELEELPDNPHPDLVRRFRIAESARGLFRSLEDDVKASAGMENKVATSPELSGVTYVEGSRRVWGMPHMLRMVDTAHLHEMGAVLNANEACLRADAHEI-ERQSENSHVNVWVALTGPAALAGRL 483
++E S+RE A RDKAY+E G+SSLIQ FFDELF+ EELP NP+P+LVRRFRIAESA+GLFRS+ DD K +AGM N VATSPELSGVTYV+GS +WGMPHMLRM D AHL M AV+N NE CLR DAHE+ +R ++ HVNVWVALTGPAALAGRL
Sbjct: 10 DEEEESSSLREDVAVRDKAYVEEKGISSLIQGFFDELFQREELPANPYPELVRRFRIAESAQGLFRSIHDDAKVAAGMLNNVATSPELSGVTYVQGSYGIWGMPHMLRMADVAHLEVMSAVVNENEQCLRVDAHELGDRHGDDCHVNVWVALTGPAALAGRL 171
BLAST of mRNA_P-littoralis_Contig77.23.1 vs. uniprot
Match: A0A210PWT5_MIZYE (Uncharacterized protein n=4 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PWT5_MIZYE) HSP 1 Score: 59.3 bits (142), Expect = 6.160e-5 Identity = 67/320 (20.94%), Postives = 128/320 (40.00%), Query Frame = 1
Query: 37 TAARDKAYLEGTGVSSLIQDFFDELFELEELPDNPHPDLVRRFRIAESARGLFRSLEDDVKASAGMENKVATSPELSGVTYVEGSRRVWGMPHMLRMVDTAHLHEMGAVLNANEACLRADAHEIERQSENSHVN-VWVALTGPAALAGRLCTEFWAEIHLEAGVEITAKTYHLAIDLFAETILVEAKGCQGSNQLLLRRVVI-----DFPLRRVMQSFNGGERTEWTPRQLHDTPDAFISQIKTSLPFRPSVTMEYLF-LSPSGSHRTVGGPIMSIRRSYTMHHQNSTKAKRSSSRWPFRSLYGGVFLSGAEAKHYGNYF 975
T R + YLE T + + L + ELP NP+P LV+RFR ++A + K + N + S + + +V G +WG+ +LR++ + +++ SE + N V VA+ GP G + + + L IT + + + +F +++ E G + + L+ V + D P +M W P ++ + F+ + ++ + M+ +F + P + T G + + + S +P SL+ GVFL+ + A+ Y + F
Sbjct: 75 TMQRFRDYLEETELVESFRRLMTLLLDRPELPYNPYPGLVQRFR--QNAEAFHLDQIPEGKIHQILHNNLQESI-MQDLFFVRGYDNIWGLSSILRVISPQQISRYKWLVD------NMTPEPENLFSEPGYTNQVTVAMVGPCVFEGTFYQQV-SNLQLRKEFLITGEDVKMGVSIFVNSVMAEIDGMYTNPRHLILGVNLPYGDNDSPTVTLMDF--------WDPDRIQQEKETFLQAMSDTVLSNKYIYMDGIFRVDPDVATYTRGQVQFGLNFISLSLTAGANEGLSSFCEYPMSSLHEGVFLNRSHAEAYLSIF 376 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig77.23.1 >prot_P-littoralis_Contig77.23.1 ID=prot_P-littoralis_Contig77.23.1|Name=mRNA_P-littoralis_Contig77.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1289bp MSVRESTAARDKAYLEGTGVSSLIQDFFDELFELEELPDNPHPDLVRRFRback to top mRNA from alignment at P-littoralis_Contig77:75412..80584- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig77.23.1 ID=mRNA_P-littoralis_Contig77.23.1|Name=mRNA_P-littoralis_Contig77.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5173bp|location=Sequence derived from alignment at P-littoralis_Contig77:75412..80584- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig77:75412..80584- >mRNA_P-littoralis_Contig77.23.1 ID=mRNA_P-littoralis_Contig77.23.1|Name=mRNA_P-littoralis_Contig77.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=3867bp|location=Sequence derived from alignment at P-littoralis_Contig77:75412..80584- (Pylaiella littoralis U1_48)back to top |