prot_P-littoralis_Contig77.13.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig77.13.2
Unique Nameprot_P-littoralis_Contig77.13.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length156
Homology
BLAST of mRNA_P-littoralis_Contig77.13.2 vs. uniprot
Match: D7G6X7_ECTSI (Chloroplast 50S ribosomal protein 17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X7_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 1.250e-93
Identity = 141/155 (90.97%), Postives = 148/155 (95.48%), Query Frame = 0
Query:    1 MRKRVNMHRLGRDMSHRLAMLRNMVTSLIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQSIVRENGAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAVIEFVDREGELRPARQVGQTRGLLDLVEDDISAKEEQKKSAMP 155
            MRKRVNMHRLGRDMSHRLAMLRNMVTS IYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQ +VREN AVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMA+IEFVDREGELRPARQVGQTRGL+DLVEDD   K+ QK+S++P
Sbjct:    1 MRKRVNMHRLGRDMSHRLAMLRNMVTSFIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQGVVRENAAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAIIEFVDREGELRPARQVGQTRGLVDLVEDDFLTKD-QKESSLP 154          
BLAST of mRNA_P-littoralis_Contig77.13.2 vs. uniprot
Match: A0A835Z8L6_9STRA (Chloroplast 50S ribosomal protein 17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L6_9STRA)

HSP 1 Score: 166 bits (421), Expect = 4.260e-50
Identity = 82/125 (65.60%), Postives = 105/125 (84.00%), Query Frame = 0
Query:    9 RLGRDMSHRLAMLRNMVTSLIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQSIVRENGAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAVIEFVDREGELRPARQVGQTR 133
            R+GR  +HR+AML+NMVTSLI HERI+TTVP+AK L+ +AD MVT AK GT H +R AQS +++ GA+ KLF+VLGPRY++RPGGYTR++KL  PR GD+ADM +IEFVDR+GELRPAR VG+ +
Sbjct:   12 RMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDK 136          
BLAST of mRNA_P-littoralis_Contig77.13.2 vs. uniprot
Match: A0A7S3QJX6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJX6_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.260e-49
Identity = 86/143 (60.14%), Postives = 108/143 (75.52%), Query Frame = 0
Query:    1 MRKRVNMHRLGRDMSHRLAMLRNMVTSLIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQSIVRENGAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAVIEFVDREGELRPARQVGQTRGLLDLVEDDI 143
            M+KR+   +LGR  SHR AMLRNMVTSLIYHERI TTVP+AKE+R +A+ ++  AK G+ H +R A  +VRE  AV KLFEVLGPRY+DR GGYTRV+KL KPR+GD A MAV+E+VDR GE+R AR       LLD +++ +
Sbjct:    1 MKKRIAFRKLGRTASHRWAMLRNMVTSLIYHERIVTTVPKAKEVRHLAEKIIKHAKNGSLHSRRLADKVVREEPAVTKLFEVLGPRYQDREGGYTRVLKLSKPRQGDNAPMAVLEYVDRPGEIRAARPPKGRFDLLDTLDEAL 143          
BLAST of mRNA_P-littoralis_Contig77.13.2 vs. uniprot
Match: A0A7S0ASE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASE6_9STRA)

HSP 1 Score: 160 bits (405), Expect = 8.490e-47
Identity = 80/127 (62.99%), Postives = 103/127 (81.10%), Query Frame = 0
Query:    1 MRKRVNMHRLGRDMSHRLAMLRNMVTSLIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQSIVRENGAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAVIEFVDREGELRPAR 127
            M+KR+   +LGR  +H+ AMLRNMVTSLI HERI TT+P+AKELRK+AD MV L K G+ H +RQA +++RE   + KLFE+LGPRY++R GGYTRV+KL +PR+GD AD+AVIE+VDR GE+R AR
Sbjct:   39 MKKRLAFRKLGRQPAHKWAMLRNMVTSLIKHERIVTTLPKAKELRKLADKMVGLGKSGSLHSRRQAGAVIRERPVLTKLFEILGPRYEEREGGYTRVLKLSRPREGDNADLAVIEYVDRPGEVRAAR 165          
BLAST of mRNA_P-littoralis_Contig77.13.2 vs. uniprot
Match: A0A7S3M8Y7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8Y7_9STRA)

HSP 1 Score: 157 bits (396), Expect = 3.520e-46
Identity = 86/127 (67.72%), Postives = 98/127 (77.17%), Query Frame = 0
Query:    1 MRKRVNMHRLGRDMSHRLAMLRNMVTSLIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQSIVRENGAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAVIEFVDREGELRPAR 127
            MRKR  + +LG D +HR AMLRNMVTSLI HERI TTV RAK +R+ A+ MVT AKKG   H+R A   VRE  A+VKLFE+LGPRY +R GGYTRVMKL KPR+GD A MA +EFVDREGELR AR
Sbjct:    1 MRKRNLIKQLGFDDTHRRAMLRNMVTSLIKHERIMTTVARAKVMRRFAEKMVTHAKKGNLTHRRLAAGFVREKPALVKLFEILGPRYAEREGGYTRVMKLMKPRRGDSAAMAYVEFVDREGELRKAR 127          
BLAST of mRNA_P-littoralis_Contig77.13.2 vs. uniprot
Match: A0A7S3PMY3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMY3_9STRA)

HSP 1 Score: 153 bits (387), Expect = 6.010e-45
Identity = 85/149 (57.05%), Postives = 111/149 (74.50%), Query Frame = 0
Query:    1 MRKRVNMHRLGRDMSHRLAMLRNMVTSLIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQSIVRENGAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAVIEFVDREGELRPARQVGQTR-------GLLDLVEDD 142
            MR +V   +L R  SHR AMLRNMVTSLI++ERI+TTVP+AKELR+VAD MVTL KKG+ H +RQ+  +VR+  A+ KLF+VLGPRY +RPGG+TR++++   R+GD ADM V+EFVD+EGELR A+ V +         GL  L+E D
Sbjct:    1 MRHQVKFRKLNRTSSHRWAMLRNMVTSLIHYERIKTTVPKAKELRRVADWMVTLGKKGSLHARRQSLKVVRDKAAMHKLFDVLGPRYINRPGGFTRIVRVGH-RRGDAADMCVMEFVDKEGELRKAKPVDENTVKRNRGIGLQILLEQD 148          
BLAST of mRNA_P-littoralis_Contig77.13.2 vs. uniprot
Match: A0A6T7JZV4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6T7JZV4_9STRA)

HSP 1 Score: 151 bits (382), Expect = 4.150e-44
Identity = 83/128 (64.84%), Postives = 98/128 (76.56%), Query Frame = 0
Query:    1 MRKRVNMHR-LGRDMSHRLAMLRNMVTSLIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQSIVRENGAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAVIEFVDREGELRPAR 127
            MRKR+   R LGR   H+ AMLRNMVTSLI HERI TT+P+AKELR +AD +V  AKKG  H ++ A  +VRE   V KLFEV+GPRY+DR GGYTRVMKL +PR+GD A MAVIE+VDR GE+R AR
Sbjct:    1 MRKRLAQFRKLGRTPDHKWAMLRNMVTSLIKHERIVTTLPKAKELRHLADKVVGYAKKGDVHAKQLALRVVREKPMVTKLFEVMGPRYEDRDGGYTRVMKLSRPRRGDNAPMAVIEYVDRPGEIRAAR 128          
BLAST of mRNA_P-littoralis_Contig77.13.2 vs. uniprot
Match: A0A7S2LPJ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LPJ0_9STRA)

HSP 1 Score: 150 bits (380), Expect = 7.840e-44
Identity = 76/127 (59.84%), Postives = 99/127 (77.95%), Query Frame = 0
Query:    1 MRKRVNMHRLGRDMSHRLAMLRNMVTSLIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQSIVRENGAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAVIEFVDREGELRPAR 127
            MRKR+   +L R  +H+ AMLRNMVTSLIYHERI TT P+AKEL+++A+ M+   K G+ H +RQA +I+RE  A+ KLFEVLGPRY +R GGYTRV++L KPR GD A M++IE+VDR GE+R A+
Sbjct:    1 MRKRIAFRKLSRTPTHKWAMLRNMVTSLIYHERIVTTTPKAKELKRLAEWMIGFGKDGSLHARRQADAILREKPALTKLFEVLGPRYAERDGGYTRVLQLAKPRTGDNAPMSIIEYVDRPGEIRAAK 127          
BLAST of mRNA_P-littoralis_Contig77.13.2 vs. uniprot
Match: A0A7R9W6F4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6F4_9STRA)

HSP 1 Score: 149 bits (377), Expect = 4.620e-43
Identity = 85/152 (55.92%), Postives = 105/152 (69.08%), Query Frame = 0
Query:    1 MRKRVNMHRLGRDMSHRLAMLRNMVTSLIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQSIVRENGAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAVIEFVDREGELRPAR--QVGQTRGLLDLVEDDISAKEEQK 150
            M+KR+   +LGR   H+ AMLRNM TSLI HERI TTV +AKELRK+ADN++   KKGT   +RQA +I+RE   V KLFEVLGPRY +R GGYTRVMK+ + R GD A +A IE+VDR GE+R AR  +  + R L   V +DI    E K
Sbjct:    1 MKKRIAFRQLGRTSKHKWAMLRNMATSLIKHERIVTTVAKAKELRKLADNLIGFGKKGTVQARRQANAIIREKPMVTKLFEVLGPRYAEREGGYTRVMKIARFRVGDNAPLAAIEYVDRPGEIRAARPPKARRDRILAGGVLNDILEDTEMK 152          
BLAST of mRNA_P-littoralis_Contig77.13.2 vs. uniprot
Match: W7U3L1_9STRA (Ribosomal protein l17 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3L1_9STRA)

HSP 1 Score: 148 bits (373), Expect = 9.320e-43
Identity = 78/119 (65.55%), Postives = 93/119 (78.15%), Query Frame = 0
Query:    9 RLGRDMSHRLAMLRNMVTSLIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQSIVRENGAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAVIEFVDREGELRPAR 127
            +LGR  SHR AMLRNMVTSL+ HERIRTT  +AKELR+VAD MVT AK G+ H +RQA  ++R    + KLF+VLGPRY  R GGYTRV+KLQ+ R GD A+M++IEFV R GELRPAR
Sbjct:    5 KLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPAR 123          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.13.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X7_ECTSI1.250e-9390.97Chloroplast 50S ribosomal protein 17 n=2 Tax=Ectoc... [more]
A0A835Z8L6_9STRA4.260e-5065.60Chloroplast 50S ribosomal protein 17 n=1 Tax=Tribo... [more]
A0A7S3QJX6_9STRA1.260e-4960.14Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0ASE6_9STRA8.490e-4762.99Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S3M8Y7_9STRA3.520e-4667.72Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3PMY3_9STRA6.010e-4557.05Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A6T7JZV4_9STRA4.150e-4464.84Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2LPJ0_9STRA7.840e-4459.84Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7R9W6F4_9STRA4.620e-4355.92Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
W7U3L1_9STRA9.320e-4365.55Ribosomal protein l17 n=1 Tax=Nannochloropsis gadi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036373Ribosomal protein L17 superfamilyGENE3D3.90.1030.10Ribosomal protein L17coord: 1..117
e-value: 4.4E-48
score: 164.5
IPR036373Ribosomal protein L17 superfamilySUPERFAMILY64263Prokaryotic ribosomal protein L17coord: 1..120
IPR000456Ribosomal protein L17PFAMPF01196Ribosomal_L17coord: 20..117
e-value: 7.5E-37
score: 126.2
IPR000456Ribosomal protein L17TIGRFAMTIGR00059TIGR00059coord: 7..118
e-value: 2.6E-40
score: 135.2
IPR000456Ribosomal protein L17PANTHERPTHR14413RIBOSOMAL PROTEIN L17coord: 1..151
IPR000456Ribosomal protein L17PROSITEPS01167RIBOSOMAL_L17coord: 34..56
IPR000456Ribosomal protein L17HAMAPMF_01368Ribosomal_L17coord: 5..117
score: 25.034386
NoneNo IPR availablePANTHERPTHR14413:SF1639S RIBOSOMAL PROTEIN L17, MITOCHONDRIALcoord: 1..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:48384..52041 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.13.2mRNA_P-littoralis_Contig77.13.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig77 47722..52120 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig77.13.2 ID=prot_P-littoralis_Contig77.13.2|Name=mRNA_P-littoralis_Contig77.13.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
MRKRVNMHRLGRDMSHRLAMLRNMVTSLIYHERIRTTVPRAKELRKVADN
MVTLAKKGTPHHQRQAQSIVRENGAVVKLFEVLGPRYKDRPGGYTRVMKL
QKPRKGDQADMAVIEFVDREGELRPARQVGQTRGLLDLVEDDISAKEEQK
KSAMP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036373Ribosomal_L17_sf
IPR000456Ribosomal_L17