mRNA_P-littoralis_Contig77.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.4.1
Unique NamemRNA_P-littoralis_Contig77.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:25630..28187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog109760.SPPG_09416T0
Preferred nameTMEM107
PFAMsTMEM107
Model size468
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categorysignal peptide
GOsGO:0003002,GO:0005575,GO:0005623,GO:0005929,GO:0006996,GO:0007275,GO:0007389,GO:0007399,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0016043,GO:0021532,GO:0021915,GO:0022607,GO:0030030,GO:0030031,GO:0030326,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035869,GO:0036038,GO:0042733,GO:0042995,GO:0043009,GO:0043226,GO:0044085,GO:0044422,GO:0044441,GO:0044463,GO:0044464,GO:0044782,GO:0048598,GO:0048731,GO:0048736,GO:0048856,GO:0051179,GO:0051641,GO:0060173,GO:0060271,GO:0060429,GO:0061512,GO:0070727,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1904491,GO:1905515
Exons3
Evalue0.000547
EggNOG OGs2AP86@1|root,2RZG7@2759|Eukaryota,3A1JP@33154|Opisthokonta
Ec32 ortholog descriptionTransmembrane protein 107
Ec32 orthologEc-01_011890.1
Descriptionprotein localization to ciliary transition zone
Cds size276
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791585.5721838-UTR-P-littoralis_Contig77:25629..257941680791585.5721838-UTR-P-littoralis_Contig77:25629..25794Pylaiella littoralis U1_48UTRP-littoralis_Contig77 25630..25794 -
1680791585.6220427-UTR-P-littoralis_Contig77:28160..281871680791585.6220427-UTR-P-littoralis_Contig77:28160..28187Pylaiella littoralis U1_48UTRP-littoralis_Contig77 28161..28187 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791585.5843627-CDS-P-littoralis_Contig77:25794..258341680791585.5843627-CDS-P-littoralis_Contig77:25794..25834Pylaiella littoralis U1_48CDSP-littoralis_Contig77 25795..25834 -
1680791585.6015942-CDS-P-littoralis_Contig77:26553..266191680791585.6015942-CDS-P-littoralis_Contig77:26553..26619Pylaiella littoralis U1_48CDSP-littoralis_Contig77 26554..26619 -
1680791585.6119914-CDS-P-littoralis_Contig77:27990..281601680791585.6119914-CDS-P-littoralis_Contig77:27990..28160Pylaiella littoralis U1_48CDSP-littoralis_Contig77 27991..28160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.4.1prot_P-littoralis_Contig77.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 25795..28160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.4.1

>prot_P-littoralis_Contig77.4.1 ID=prot_P-littoralis_Contig77.4.1|Name=mRNA_P-littoralis_Contig77.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
MVDGLVQLITGRFLVLLLHAVTTMLLFYGKTPLVWIELDPNQADDDRKEQ
YEYIDRWMTALLTLATICMAVEFVGLLSGRPRSSRLRATTA*
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mRNA from alignment at P-littoralis_Contig77:25630..28187-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.4.1 ID=mRNA_P-littoralis_Contig77.4.1|Name=mRNA_P-littoralis_Contig77.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2558bp|location=Sequence derived from alignment at P-littoralis_Contig77:25630..28187- (Pylaiella littoralis U1_48)
CTTGTCGTGCGCAGGTGTGAATGAAAAATGGTTGACGGACTGGTACAACT
TATCACCGGCAGGTTTTTGGTGCTTTTGTTACATGCTGTTACAACGATGT
TGCTCTTTTATGGGAAGACACCGTTGGTTTGGATTGAGCTGGATCCGAAC
CAGGCCGACGACGACCGCAAGGAGCAGTACGAATACATCGACAGATGGTA
AGGCGATTCCTGTCAACAGTGTACTGACTGCACATACCACGATACACTAC
TACTGCAGTGCTTCACAGTAGTTTGTCACATAGATACTTTTATCTCTCAA
ACCTGGTGGGTACAGTGGGCGCCCGCAAGTAAGAAAAATTGAAGTAAGAA
ATTTAGGCTCAGATTTCTGCGAAAAATAAGAAAAATCCGCCAAGAAACAC
AGCTCAACCTGGGCCATCAAGTAAGAAACACCCTAACAAGAAACTGAGGG
CAAGACCGCTCCAAACCTTAAGAAACGAAGCGCATTGGAGAGGGTGCGAA
AAATATGAAACGGCCGTTGGAGCCCAGTGCCCACCCCTACCAGATGGTGG
GTGTATTTTTGGTAACCTATGGGTATGGTACAAACATATGCGAACCCCCC
TGTTCAGACCGGGCGCCATGTTGGCATGATGGCACTGGTGTGTCGACACA
TGGTCGGGCATGATGGCCCTTGCCACTGCCTCGATCGGCAGCTTGGACGA
CTTGTTGGCCATAAAAGATCAGCTGACTAGCGGCCAAGTCACTGATATCA
AACAGCACTTCCTCAAGAAAGAGTGCAATTCCTGCAAGGCCCCCAGCAAT
AAGAAACTGCGAATAGGAAAAATCAGCACCAAGGCTGGTACACAGGCCAG
CAAATAGGAAATCGAGGCTCAACCCATATTTTACGTTTCTTACTTGCGGG
CGCCCGCTGTATTAGCTATGAAGCCCACGGCTTTTGTACGAGTATCTTCC
TGTGCGGCTTTCGCGCATGCCAAAAACATGTTCTCGTTTATGCCCTACAG
AGAGCTAGTCTACAGGGTAGAGCCCATCTGTACACTCTATGATAGTATCT
CTCTCCTCCAGCCCTTCGAGACGTTCAGGTTGGACCAAAATCAGGAGGAC
TGCCCCTGACCTCACCTCATCATACATACTAACTCCAATTTCCATCTTGG
GGGTTTAACCGGCTCAACTATCCAGGGAATCTGCACATACATAGTTCACA
CCCGAGATACCATACGGTACGTATAATATGTGGCACCCCGAACTGAATAT
ATCGTATCTTGCTTGGTGGGTGTGTGGTGTGTCTCCCGCACATCACTTCT
GTCTTTAATAATACTTTCCTTACGAAGAGAGGATGCTTCCTTTGAACTGG
CCGATACCGGAATACACTCATTTGTCCGAGTGTGTCATATTTCTCATCGT
AATGTATTCTCAATGCTCAGCTTTACCCTTGGAATAGCCCCGAGCGAGGG
CAACCTAAATTACGATATCACGTGCGTTATGCCATCCTCGTTGGCGTTGC
CGTCGTTTGGTGATTACACCCCGTCCTTGCCATGATCTTTTGCTTCTTCT
GGTAAATGTATTCCACAGGATGACCGCTCTCCTGACTCTTGCAACAATAT
GCATGGCCGTGGAGTTTGTTGGACTTCTTTCGGGGTATACAATGCATCAA
AAAAGTGCCAACGTTGTTTCAGCTCTGGCCCATTTTGGAGGGTTCTTGTC
GACCTTGTCGATGGTGCTTAACGGGTGGACCGTTCGCGTATACCCGTACG
TGTTTACATTTTGCAGGTGCGTAAGAACTCCATTCTATCATAGAGCGGAA
TGAAGACTAGATGGACCACCTCGGTCTTTGGACAACTTTTGATGTGCAAG
GCAGTGGGAACAAACACATGTCATATGCAGCACATGTCGCGGTATGTATT
TGATGACGACCCTCTCTTGATCGGAAGGAAAATGTCACGTTTAATCCGAG
ATCTCCTCTGCACACACACATAATAAACGATCGAGCTTCGTGAGGGTCAA
TTGTTTCCCTATTTCAAGTCTGGTATTCCCATCGAGGGGATACTCTCTTG
CTGACGTAGTCTCATCAGGATCGACGTATACATCAGCGGGAATGATGTTC
TCACGCACAAAAATGTACAACGCGTGGCTCATACGCGCCGGTCGATACTG
GTCTACAAAAACGTAGAACAAGTTCAGGGTTGTCAAATCGATTCGTTATT
GAACCGGTTCATATATACAACTGCTGTGTCGTCAGCACCTTCAACCGTGG
TACCTAAATCGTTCATTATTCCATCAGCAGCTGCTTGCCAGCTGGGTTCG
ACGTCATGTGGTGGACGTTCCAGATGGTCGCAGGAAAAGCCAGGCCAAGA
TAGACGTCCAAGGAGCTCACGTTTACGGGCTACTACTGCATAGGCTCCAA
ACGCGAGGAGTTTACGCTAACACGAAACCGCTACTGGTACAACGTGGAGG
ACACAAAGGCTATTTACTTTTTTTCTTTTTGTTTGCGACAGACTTCTTGG
CGGGGGCGTTCTTGCCTTTCCCACCACCCTTCGCGGCTTCCTTTCCGGCT
CCCTTCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:25630..28187-

>mRNA_P-littoralis_Contig77.4.1 ID=mRNA_P-littoralis_Contig77.4.1|Name=mRNA_P-littoralis_Contig77.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig77:25630..28187- (Pylaiella littoralis U1_48)
ATGGTTGACGGACTGGTACAACTTATCACCGGCAGGTTTTTGGTGCTTTT
GTTACATGCTGTTACAACGATGTTGCTCTTTTATGGGAAGACACCGTTGG
TTTGGATTGAGCTGGATCCGAACCAGGCCGACGACGACCGCAAGGAGCAG
TACGAATACATCGACAGATGGATGACCGCTCTCCTGACTCTTGCAACAAT
ATGCATGGCCGTGGAGTTTGTTGGACTTCTTTCGGGACGTCCAAGGAGCT
CACGTTTACGGGCTACTACTGCATAG
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