mRNA_P-littoralis_Contig77.130.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.130.1
Unique NamemRNA_P-littoralis_Contig77.130.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:560751..561128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size379
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791585.222438-CDS-P-littoralis_Contig77:560750..5611281680791585.222438-CDS-P-littoralis_Contig77:560750..561128Pylaiella littoralis U1_48CDSP-littoralis_Contig77 560751..561128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.130.1prot_P-littoralis_Contig77.130.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 560751..561128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.130.1

>prot_P-littoralis_Contig77.130.1 ID=prot_P-littoralis_Contig77.130.1|Name=mRNA_P-littoralis_Contig77.130.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
SSPLLLHVYTCAASSTKSGVECYRIGGNISGYKIAIKSCRACFAFSPRRS
LYGGMLGCVCGVSQRRVTRRCYRQPINLYTATYEMMVSVRLLCLVFRARG
RLSSDVSSAACVASRRRTVKIVYEYG
back to top

mRNA from alignment at P-littoralis_Contig77:560751..561128-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.130.1 ID=mRNA_P-littoralis_Contig77.130.1|Name=mRNA_P-littoralis_Contig77.130.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig77:560751..561128- (Pylaiella littoralis U1_48)
TCTTCACCATTACTGCTGCATGTATACACGTGTGCGGCCAGCAGCACCAA
GTCCGGAGTTGAATGTTATCGGATTGGTGGGAACATTAGTGGGTATAAAA
TCGCGATCAAGTCCTGTCGTGCCTGCTTTGCCTTCTCTCCACGACGTTCG
CTCTACGGGGGGATGCTTGGGTGTGTGTGTGGTGTGTCACAGCGCCGTGT
CACAAGGCGCTGTTACCGGCAACCTATCAACTTGTACACAGCTACATATG
AGATGATGGTGTCTGTACGGCTTCTGTGCCTGGTATTCCGGGCACGTGGA
CGGCTCTCGTCTGATGTTAGCTCCGCCGCCTGTGTCGCAAGTCGGCGCCG
TACGGTAAAAATCGTATACGAATACGGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig77:560751..561128-

>mRNA_P-littoralis_Contig77.130.1 ID=mRNA_P-littoralis_Contig77.130.1|Name=mRNA_P-littoralis_Contig77.130.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig77:560751..561128- (Pylaiella littoralis U1_48)
TCTTCACCATTACTGCTGCATGTATACACGTGTGCGGCCAGCAGCACCAA
GTCCGGAGTTGAATGTTATCGGATTGGTGGGAACATTAGTGGGTATAAAA
TCGCGATCAAGTCCTGTCGTGCCTGCTTTGCCTTCTCTCCACGACGTTCG
CTCTACGGGGGGATGCTTGGGTGTGTGTGTGGTGTGTCACAGCGCCGTGT
CACAAGGCGCTGTTACCGGCAACCTATCAACTTGTACACAGCTACATATG
AGATGATGGTGTCTGTACGGCTTCTGTGCCTGGTATTCCGGGCACGTGGA
CGGCTCTCGTCTGATGTTAGCTCCGCCGCCTGTGTCGCAAGTCGGCGCCG
TACGGTAAAAATCGTATACGAATACGGC
back to top