mRNA_P-littoralis_Contig77.52.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.52.1
Unique NamemRNA_P-littoralis_Contig77.52.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:161006..161490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size485
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791585.07673-UTR-P-littoralis_Contig77:161005..1610131680791585.07673-UTR-P-littoralis_Contig77:161005..161013Pylaiella littoralis U1_48UTRP-littoralis_Contig77 161006..161013 -
1680791585.0998528-UTR-P-littoralis_Contig77:161349..1614901680791585.0998528-UTR-P-littoralis_Contig77:161349..161490Pylaiella littoralis U1_48UTRP-littoralis_Contig77 161350..161490 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791585.0897434-CDS-P-littoralis_Contig77:161013..1613491680791585.0897434-CDS-P-littoralis_Contig77:161013..161349Pylaiella littoralis U1_48CDSP-littoralis_Contig77 161014..161349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.52.1prot_P-littoralis_Contig77.52.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 161014..161349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.52.1

>prot_P-littoralis_Contig77.52.1 ID=prot_P-littoralis_Contig77.52.1|Name=mRNA_P-littoralis_Contig77.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MVGDPCWIGTWCRISSSRLGCSVWPRCVNIVLWFYSWRAIAAWIEQSLSF
CDVFASPQLPFLPSLPAPLRPRESDVSSCDTPTSRDRRLAFIFAEHSCNE
WVPQVFTWTSA*
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mRNA from alignment at P-littoralis_Contig77:161006..161490-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.52.1 ID=mRNA_P-littoralis_Contig77.52.1|Name=mRNA_P-littoralis_Contig77.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=485bp|location=Sequence derived from alignment at P-littoralis_Contig77:161006..161490- (Pylaiella littoralis U1_48)
CCTGACGATGCGACGAGGCTCGGCTCTATCAAGACAAGGATAAGGTGTGG
GAAAATTGAAAAATTGGCGATGTGGGATACAGCGCTCTGTTGCAGCACCT
GATTTGTGAGTTGGCATCCTCTTTGTTGTGCTGGTGGTGCTATGGTTGGT
GACCCCTGTTGGATAGGAACATGGTGCCGCATCAGTAGTAGTCGACTTGG
TTGCAGCGTTTGGCCGCGTTGCGTGAATATCGTACTGTGGTTTTACTCTT
GGCGAGCTATTGCAGCGTGGATCGAACAAAGCTTGTCATTTTGCGACGTT
TTTGCGAGTCCTCAGCTGCCGTTTCTGCCGAGCCTTCCAGCACCATTGCG
GCCACGTGAGAGTGATGTTTCCAGCTGTGACACGCCGACCTCAAGGGACC
GTCGTCTTGCATTTATTTTTGCTGAACATTCATGTAACGAATGGGTTCCC
CAGGTATTTACCTGGACCTCCGCATGACTACGAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:161006..161490-

>mRNA_P-littoralis_Contig77.52.1 ID=mRNA_P-littoralis_Contig77.52.1|Name=mRNA_P-littoralis_Contig77.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig77:161006..161490- (Pylaiella littoralis U1_48)
ATGGTTGGTGACCCCTGTTGGATAGGAACATGGTGCCGCATCAGTAGTAG
TCGACTTGGTTGCAGCGTTTGGCCGCGTTGCGTGAATATCGTACTGTGGT
TTTACTCTTGGCGAGCTATTGCAGCGTGGATCGAACAAAGCTTGTCATTT
TGCGACGTTTTTGCGAGTCCTCAGCTGCCGTTTCTGCCGAGCCTTCCAGC
ACCATTGCGGCCACGTGAGAGTGATGTTTCCAGCTGTGACACGCCGACCT
CAAGGGACCGTCGTCTTGCATTTATTTTTGCTGAACATTCATGTAACGAA
TGGGTTCCCCAGGTATTTACCTGGACCTCCGCATGA
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