mRNA_P-littoralis_Contig77.139.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.139.1
Unique NamemRNA_P-littoralis_Contig77.139.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:581794..583231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1105
Hectar predicted targeting categorysignal anchor
Exons3
Cds size612
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791584.982245-UTR-P-littoralis_Contig77:581793..5820101680791584.982245-UTR-P-littoralis_Contig77:581793..582010Pylaiella littoralis U1_48UTRP-littoralis_Contig77 581794..582010 +
1680791584.993245-UTR-P-littoralis_Contig77:582090..5823241680791584.993245-UTR-P-littoralis_Contig77:582090..582324Pylaiella littoralis U1_48UTRP-littoralis_Contig77 582091..582324 +
1680791585.038125-UTR-P-littoralis_Contig77:583189..5832311680791585.038125-UTR-P-littoralis_Contig77:583189..583231Pylaiella littoralis U1_48UTRP-littoralis_Contig77 583190..583231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791585.0031128-CDS-P-littoralis_Contig77:582324..5825191680791585.0031128-CDS-P-littoralis_Contig77:582324..582519Pylaiella littoralis U1_48CDSP-littoralis_Contig77 582325..582519 +
1680791585.017703-CDS-P-littoralis_Contig77:582772..5831891680791585.017703-CDS-P-littoralis_Contig77:582772..583189Pylaiella littoralis U1_48CDSP-littoralis_Contig77 582773..583189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.139.1prot_P-littoralis_Contig77.139.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 582325..583189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.139.1

>prot_P-littoralis_Contig77.139.1 ID=prot_P-littoralis_Contig77.139.1|Name=mRNA_P-littoralis_Contig77.139.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=204bp
MDGGGVGSGRVAMCSCVLSWLWIFRIPSRYRFGWWRRWQWACGNVFVRAI
MALDFSYPKSVPPIVWCSAVSKDAILVGCGVGVGAGVGCVGVWSRCWQWR
VAVCSFVLSELAIFFIPSQYRQSLSSSLFIDHGSGSDFSFRSTATTPECE
ALCSSQCPVSSKEDPIDSLSCFGMEGVSKTGVSRFACFSLIFGDANNGFR
TTT*
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mRNA from alignment at P-littoralis_Contig77:581794..583231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.139.1 ID=mRNA_P-littoralis_Contig77.139.1|Name=mRNA_P-littoralis_Contig77.139.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1438bp|location=Sequence derived from alignment at P-littoralis_Contig77:581794..583231+ (Pylaiella littoralis U1_48)
AGCTGGAGCCTGACGACTTGTCTGAACGGTTCTCTCGGCAGGACATTTTG
TCTCGAGCTGAGGCCGGGGAACTGTTGCGACAGGTGCGAATTGTGTCAAC
ATATGAACATTTGGGTCATTGATGGTGATCGTCGGTTGTGTGTCGATGGA
AGCGGATTGAGGAAGAGGAATGACTACTCATGATGTCATGTCGACGACGG
TTGGTCTTCGAAAGCAATATTGGACTTTCACCAGATAGTGTGAATCGAAA
AAGTGGGCCTGATCAAGGTGATATTTGAACTCACGCTCTTCCGAACTTGT
GCCTTACACTAGCGCCTTGGACCGCTCGGCCACTTGACCAGATGATCACT
ACCCGCTTCACGGTCTCCCACCGGAAATCGTTGACTTATACAAAGTATAT
CGTAGATTCACCGCTGTAACTTTGGAAAACAGCACATTAGCTAGTTGGCG
TAGGCGGTGTTGGGCCGTTCCCAAAGATGTGTGATTCTCGTGGCTTGTGG
TGCTGGTGCTGGTGTTGGTTGGGTGGGTGTTATGGATGGTGGAGGCGTTG
GCAGTGGGCGTGTGGCGATGTGTTCGTGCGTTCTATCATGGCTCTGGATT
TTTCGTATCCCAAGTCGGTACCGTTTTGGATGGTGGAGGCGTTGGCAGTG
GGCGTGTGGTAATGTGTTCGTGCGTGCTATCATGGCTCTGGATTTTTCGT
ATCCCAAGTCAGTACCGCCCATCGTCGTCGTCGTCACGCTTCTCGAGAGC
TTGCTCACTAGAGACATGAACCGAAAAAGGGACGTGATCAAGGTGAGATT
CGAACTCACGCTCTTTCGAACTAGTGCCTTAAACTAGCGCCTTAGACCGC
TCGGCCACTTGACCAGGTGTTGATGCACTGTCGCGTGGACATTCGACACG
AATGTTGGCTTATCGAGACTAGATCGTAGATTCACCGCTGTACATTTGGA
ACATAGCGCATTGGCTAGTGGGCGTAAAGTGGTGTTCGGCCGTTTCCAAA
GATGCGATTCTGGTGGGTTGTGGTGTTGGTGTTGGTGCTGGTGTTGGTTG
TGTGGGTGTTTGGTCGAGGTGCTGGCAGTGGCGCGTGGCGGTGTGTTCGT
TCGTCCTATCAGAGCTCGCGATTTTTTTCATCCCAAGTCAGTACCGCCAA
TCGTTGTCGTCGTCACTTTTCATTGACCACGGCAGCGGCAGTGACTTCAG
CTTCCGATCCACAGCTACGACGCCAGAGTGTGAAGCATTATGCAGCAGCC
AGTGCCCGGTGTCAAGCAAAGAAGACCCGATTGATTCACTTTCATGTTTT
GGGATGGAAGGGGTTTCCAAGACCGGTGTTTCGCGTTTTGCCTGTTTTTC
TTTGATATTTGGGGATGCCAACAATGGGTTTCGCACTACTACATAGCATC
TCTCCGCCCCCCCCCCTCCCCCGATAGAAAATGCATCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:581794..583231+

>mRNA_P-littoralis_Contig77.139.1 ID=mRNA_P-littoralis_Contig77.139.1|Name=mRNA_P-littoralis_Contig77.139.1|organism=Pylaiella littoralis U1_48|type=CDS|length=612bp|location=Sequence derived from alignment at P-littoralis_Contig77:581794..583231+ (Pylaiella littoralis U1_48)
ATGGATGGTGGAGGCGTTGGCAGTGGGCGTGTGGCGATGTGTTCGTGCGT
TCTATCATGGCTCTGGATTTTTCGTATCCCAAGTCGGTACCGTTTTGGAT
GGTGGAGGCGTTGGCAGTGGGCGTGTGGTAATGTGTTCGTGCGTGCTATC
ATGGCTCTGGATTTTTCGTATCCCAAGTCAGTACCGCCCATCGTCTGGTG
TTCGGCCGTTTCCAAAGATGCGATTCTGGTGGGTTGTGGTGTTGGTGTTG
GTGCTGGTGTTGGTTGTGTGGGTGTTTGGTCGAGGTGCTGGCAGTGGCGC
GTGGCGGTGTGTTCGTTCGTCCTATCAGAGCTCGCGATTTTTTTCATCCC
AAGTCAGTACCGCCAATCGTTGTCGTCGTCACTTTTCATTGACCACGGCA
GCGGCAGTGACTTCAGCTTCCGATCCACAGCTACGACGCCAGAGTGTGAA
GCATTATGCAGCAGCCAGTGCCCGGTGTCAAGCAAAGAAGACCCGATTGA
TTCACTTTCATGTTTTGGGATGGAAGGGGTTTCCAAGACCGGTGTTTCGC
GTTTTGCCTGTTTTTCTTTGATATTTGGGGATGCCAACAATGGGTTTCGC
ACTACTACATAG
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