mRNA_P-littoralis_Contig77.136.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.136.2
Unique NamemRNA_P-littoralis_Contig77.136.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig77.136.2 vs. uniprot
Match: A0A6H5L0K3_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K3_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.070e-22
Identity = 61/92 (66.30%), Postives = 69/92 (75.00%), Query Frame = 1 
Query: 1657 SAVGGEEGCCGLCGYTLEAGQAVVRSPGCAQGLMLHLRCFD--ESGVVFSDDADEGRLKFGCDCGQFHSGVGLTEGVYAFSSSPECALKPSA 1926
            SA GG+  CC LCGYTLE GQ VVRSP C +GLM+H  CF+  +S  VFSDD+D G LKFGCDCGQFH GVGLT GVYA S + + AL PSA
Sbjct:  245 SATGGDCCCC-LCGYTLEEGQRVVRSPECGEGLMVHQACFESEDSTPVFSDDSDGGALKFGCDCGQFHPGVGLTAGVYALSLASD-ALAPSA 334
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BLAST of mRNA_P-littoralis_Contig77.136.2 vs. uniprot
Match: D7FN84_ECTSI (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN84_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.390e-21
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 1 
Query: 1690 LCGYTLEAGQAVVRSPGCAQGLMLHLRCFD--ESGVVFSDDADEGRLKFGCDCGQFHSGVGLTEGVYAFSSSPECALKP 1920
            LCGYT+E GQ VVRSP CA+GLM+H  CF+  +S  VFSDD+D G LKFGCDCGQFH GVGLT GVYA S +   AL P
Sbjct:   37 LCGYTIEEGQRVVRSPECAEGLMVHQACFESEDSTPVFSDDSDGGALKFGCDCGQFHPGVGLTAGVYALSLAASDALAP 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.136.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0K3_9PHAE3.070e-2266.30Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
D7FN84_ECTSI1.390e-2167.09Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:575911..580542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FN84
PFAMsEF-hand_7,Metallophos
Model size1990
Max annot lvl2759|Eukaryota
KEGG koko:K04348,ko:K04460
KEGG Pathwayko04010,ko04020,ko04022,ko04114,ko04218,ko04310,ko04360,ko04370,ko04380,ko04650,ko04658,ko04659,ko04660,ko04662,ko04720,ko04724,ko04728,ko04921,ko04922,ko04924,ko05010,ko05014,ko05031,ko05152,ko05166,ko05167,map04010,map04020,map04022,map04114,map04218,map04310,map04360,map04370,map04380,map04650,map04658,map04659,map04660,map04662,map04720,map04724,map04728,map04921,map04922,map04924,map05010,map05014,map05031,map05152,map05166,map05167
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.37e-22
EggNOG OGsCOG0639@1|root,KOG0375@2759|Eukaryota
EC3.1.3.16
Descriptioncalcium-dependent protein serine/threonine phosphatase activity
Cds size1650
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791584.914162-UTR-P-littoralis_Contig77:575910..5762491680791584.914162-UTR-P-littoralis_Contig77:575910..576249Pylaiella littoralis U1_48UTRP-littoralis_Contig77 575911..576249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791584.9291832-CDS-P-littoralis_Contig77:576249..5776681680791584.9291832-CDS-P-littoralis_Contig77:576249..577668Pylaiella littoralis U1_48CDSP-littoralis_Contig77 576250..577668 +
1680791584.9409077-CDS-P-littoralis_Contig77:579466..5796111680791584.9409077-CDS-P-littoralis_Contig77:579466..579611Pylaiella littoralis U1_48CDSP-littoralis_Contig77 579467..579611 +
1680791584.9542363-CDS-P-littoralis_Contig77:580456..5805421680791584.9542363-CDS-P-littoralis_Contig77:580456..580542Pylaiella littoralis U1_48CDSP-littoralis_Contig77 580457..580542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.136.2prot_P-littoralis_Contig77.136.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 576250..580542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.136.2

>prot_P-littoralis_Contig77.136.2 ID=prot_P-littoralis_Contig77.136.2|Name=mRNA_P-littoralis_Contig77.136.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=550bp
MRNRLNTMELLMAPSNEDASVNQQSGSSANENNRSSLLASSTSPSRPRGP
LPPHATGRAVAAAGRRVWRAALATAIAFRALLVLWAHFTARLLRRAVGGL
IKTKESRGGQGSWEGSRRGSGIMSPAAGCYRYSSPEGGAGGGRGLAGKRG
VVKSSSSSSSLPSSFVRSSPVSPPGALLQQSLESGYGGLEQGRAGGDGGD
DDGGGGEHFWRETWRRHHAQQPQQERWQQQEQRQQQEQQKQQKRYHQPWE
EEEEGQRQRRQQEQQQHHQQHEDQWQQQQKFQQRQRQQQQQQQQQEQQQQ
QHHQQQQQQQQQQPERGFDLLPPPPSSSAGSLQQRGAGEERADCREDINY
NFNNRRATLLAARTSGDNENCTSSSIDSGRATAPASPVGTTVHDHAHHNK
HNNCCSNGSMATAVLCTNENSSATPWAAAAAAAAAVVTMSAVGGEEGCCG
LCGYTLEAGQAVVRSPGCAQGLMLHLRCFDESGVVFSDDADEGRLKFGCD
CGQFHSGVGLTEGVYAFSSSPECALKPSASDWSSSLSGFPGGTVAVAMAA
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mRNA from alignment at P-littoralis_Contig77:575911..580542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.136.2 ID=mRNA_P-littoralis_Contig77.136.2|Name=mRNA_P-littoralis_Contig77.136.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4632bp|location=Sequence derived from alignment at P-littoralis_Contig77:575911..580542+ (Pylaiella littoralis U1_48)
CGCACATGTACAGGAAAACATGATCATCGAACACATAAGCAGTTGTGGTG
TGACGAAGCTACCTCACAGCCGAGCTACCGCAACCAAGCTACCACAGCTA
CAAATCCCATCGATTTCGGAGTCAGACAGAGACCGAAAGGGGTAGGCAGG
GGGGGAAGAAAGAGGGAGTGTGTGTAACGTTATCGTAGCTGTCACGTGTT
TCAGGCAGGGACAGCATTGAGACGAAGTCGATATCAGTGACACGCACCCA
TCAACCAATGCTGTTCGAACAACGGAGCAGAAGCAGCAACAGCGCGGCGT
CATAAAGCAGGAGGCACCGCCAACCACAATCATACCATCATGAGGAACCG
ATTGAATACGATGGAGCTACTGATGGCACCGAGCAACGAAGACGCCTCAG
TAAATCAGCAGAGCGGCTCCTCCGCGAACGAGAACAACCGTTCATCATTA
TTGGCATCCTCAACTTCGCCATCTCGGCCTCGTGGTCCTCTTCCACCTCA
TGCAACGGGCCGTGCTGTCGCTGCTGCTGGAAGGAGGGTCTGGCGGGCCG
CCTTGGCAACCGCAATCGCCTTTCGCGCACTGCTGGTGCTGTGGGCTCAC
TTTACGGCGCGGTTGCTGCGGAGAGCTGTGGGCGGGCTAATCAAGACCAA
AGAATCGCGAGGTGGCCAAGGTTCTTGGGAAGGCAGTAGGCGCGGAAGTG
GTATAATGTCACCAGCAGCAGGCTGCTATCGCTACAGCAGTCCGGAGGGA
GGAGCGGGAGGAGGAAGAGGATTGGCGGGAAAGAGGGGAGTGGTGAAGTC
GTCGTCGTCATCGTCGTCACTGCCGTCCTCGTTCGTCCGATCCTCACCAG
TGTCGCCTCCTGGGGCGTTGTTACAGCAGTCGCTCGAGTCGGGCTACGGC
GGCTTGGAACAAGGGCGAGCAGGAGGAGATGGTGGAGACGACGATGGCGG
TGGCGGCGAGCATTTTTGGCGAGAGACTTGGCGGCGGCATCACGCGCAGC
AGCCGCAGCAGGAGCGGTGGCAGCAGCAGGAGCAGCGGCAGCAGCAGGAG
CAGCAGAAGCAGCAGAAGCGGTATCATCAGCCGTGGGAGGAGGAGGAGGA
AGGACAGCGGCAGCGCCGGCAGCAGGAACAGCAGCAACATCACCAGCAGC
ATGAGGATCAGTGGCAACAGCAGCAAAAATTCCAGCAGCGGCAGAGGCAG
CAGCAGCAGCAGCAGCAGCAGCAGGAACAGCAGCAGCAGCAACACCACCA
GCAGCAGCAGCAGCAGCAGCAACAACAACCCGAGAGAGGGTTTGACCTCC
TGCCACCACCGCCTTCGTCCTCAGCGGGTTCTCTGCAACAAAGAGGAGCG
GGCGAAGAACGCGCTGACTGCCGTGAAGACATCAACTACAACTTCAACAA
TAGGAGGGCCACCCTTCTTGCTGCTCGAACTAGCGGCGACAACGAAAACT
GCACCAGCAGCAGCATCGACAGCGGCAGAGCAACTGCTCCAGCATCGCCC
GTAGGAACGACGGTGCATGATCATGCCCACCACAACAAGCATAACAACTG
CTGTAGCAACGGCAGCATGGCGACTGCTGTGCTATGCACAAACGAAAACA
GCAGTGCTACACCATGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGTA
ACAATGAGCGCCGTGGGGGGAGAGGAGGGCTGCTGCGGGCTGTGCGGGTA
CACGCTGGAGGCAGGGCAAGCCGTTGTGAGGAGTCCCGGTTGCGCCCAAG
GGTTGATGGTGAGATTTTTGTTTGTGCTGTAGGTACGTACCATTCGATTC
CAGACAACAGCAAAAAATGTACTCCGAGTAGTATTATTCAGAGCATCAAA
GGTCCGAATAAAAAGTTATTTTGCATGAGTGGGGGGGCTTCCGCTGTGCC
TTTCAGAAGCAGTACTGCTGTGCAGCAGAAGGCGCTCCTGCTGACTGTCC
TCATCACAAATCTGACCCCGACAGCAGTGACTTGCAAATATCTTCTCATG
ATGCTTGTCTTGTCAAATAAATGCATGTACACACCGCTTTTAACAAGCAG
ATTGAGATAATGAGAGCGCGCGCAAGTGCGAGACTCGCGCAGAGGAGAAG
GAGGCCAACATGGGCACTCGTTGCTTGTACTTCTAGTATTGTACCGGTGC
ACGTTGTATCAGCATGTTCTACTTCGTATGTATTTGTAATTGTCGCATCA
TATCATAATATATCATAATATCATAATGTAAACGGCGTGTTTCATCTATG
CTGTTATGCCATCTATGATATTCTGGATTCTGGATGCCAGTCCTAGGTAA
CCTTCTCTCTGGGTTAATATCGGGCGCACCAGGCCGGGGTCACCCAGAAT
AAAAATCGACACGGGAAAACTCTGGTGCCAACCTTGTCCCTGTCTGTGTG
ACCCCGGCTGGAGCGTTTACCTATGATGCTGTCCCCAAAGGGGCCTAGAG
TGGCGTACGGAGTAGATGGGACGACAACACACACACTCACACACCGAAAG
GAGACCGGAGTGCGATGCAGTCCATTGTTTTTACATCATTCGTATCAGGA
AGGAAGGGTTCGGCTGTCCCTTTCCACCGCGTGGGCTCTTCTTTTCGAAA
CACAGCAGCGTCCCTCTTCCCTACACATACGCGTACATGTAGCAGTGGCG
TGATGACCATTGGACTACAGCAGCAGTCCAGCAGGCCATCATGCTGGTTC
TTGGCAAAAGTCAGCGTTGCTATCTTAGGAGAGCATTCACCCTCTGTTTT
GTCTGGGCAAGGATCTAGACAAATATTGCAGACTTCATACTTCGTAAGAC
GTGAAAAGTAAGCCGACCGACTTGTGTGTTTTCACATCTCGCATTTTGTG
TACCCTCCCTAGTACTTTCCGTGTTGTTTTCGGACCTTCCTCCCGCAAAC
ACGCCAGTACCGCCGTTCTGTGTTGTTTTATATTGTGGAACTGCCGTATT
TAGTTTTTTGCATTTCACCTGTTTCCGCCGAACGAACGCTCTTTTTTCTT
TATTTTTTTCCTTTATCGTTAGTTTAGTTAGTATTCTGCTGCTGCCGTGG
TCCCCCTCCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCCGCTCACG
TACCATTTCATCCGGATCTTTGTTTAACTTCGTTTACGCCGAACGGATGC
TGATTCATTCGTTTTCGTTTTCTGTCCGTTTATGCTGCTACTGCTGTGGC
CCTCCTCCTCCTCTACCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCG
TCCTCCTCCTCCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAG
ATGATGATGGTGATGATATTCATGATAATGTAACCTCCTCCTCCCCTTGC
TGGTGTTGACATTTACTTTTCCACTCTGTCCGTTTACCCTGCTACGATGA
TCCTCCTGCTTCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTG
CTGCTACTGATGATGATGATGATGACTATCCTGCCGCTCTTCGGCTGCTT
GCGTCATTTCGCTGATTCCTTCCTGCTGCCTGTCTCAAAACTGCCGCGAA
CTGTAGCTTCACCTCAGGTGCTTTGACGAGAGCGGTGTAGTCTTCAGTGA
CGACGCCGACGAAGGCCGACTCAAGTTCGGCTGCGACTGCGGGCAGTTTC
ACTCGGGAGTTGGACTCACGGAAGGCGTTTACGCGTTTTCTTCGTCGCCA
GGTGGGTTCGTTCGTTCTCCACCTTGGGCGGTGTTGGCCGTGGTGTTAGC
TGCGGCGGTGGTGGTTTTGGTGTTGGTAGTGATGGTGAGGTTGGTGGTGT
TGGTATTTGTGGTGGTGAAAGTGGTGAAGGTGCTACTGACAGTATAGCGG
TGGTGGCGGGGGCGGTGAAGGTGCTGCCGAAAGGGCTCTTTGTGTAGGCC
GTTGTTGTCAGTTGCTGATGATGATCCTGCGAGGTTTATTTGTTGCTTGT
TGCCGTTGCTATTGTGTTTTCTCGCGTCACTACTGTAGCTCGTCGTGAAA
AATCGCAAGGCCTGTGGGGTGGTTTAACACACCTCAAGGCGCGGGAAATG
AAGAACGATAATACTTATCGAAAATATCATGAGAATTTTTCTCTGACTTC
GTCGAGCTGTGTCGTCACCACGCGGTCTTCTCACCTGACGCGCCAATCTG
ATAGCCCGGTTTTCTTGACGCTGCTGTCACGACCGCAAAAACTTGCCGTG
ATTGTCCCTGTCGCACGTTTGGTTGAGCCTGCGGCCGAGGCTCTTAACAA
CTTACACGTATGATAGCACAAGGCACAAACAAGAGTATAGACATGAACGT
TGCCGGAACTTGCGAACCTCATCACACATATTTAACACGTACTACCATGG
GACGTCTTGTTGATACGCCTCGTTTCTCTGCGGTGGCGGGGCTGGTGGCG
GTGGCGGTGGCGATGACGTGGCGAGGACGACACTATTTTTATCCCCATTT
TCTTTTCGAGCCCTGGCTGACCCTGTGTTGCGTTTTTTTGACCGTTTCGT
ATTTTTTTGCCCGCAACGGCTGGCGGTCATGGGCCGGATCGTCCAGAATG
TGCCTTAAAACCGTCGGCGTCGGATTGGTCTTCTTCGCTCTCGGGGTTTC
CTGGAGGTACGGTGGCGGTGGCGATGGCGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:575911..580542+

>mRNA_P-littoralis_Contig77.136.2 ID=mRNA_P-littoralis_Contig77.136.2|Name=mRNA_P-littoralis_Contig77.136.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1650bp|location=Sequence derived from alignment at P-littoralis_Contig77:575911..580542+ (Pylaiella littoralis U1_48)
ATGAGGAACCGATTGAATACGATGGAGCTACTGATGGCACCGAGCAACGA
AGACGCCTCAGTAAATCAGCAGAGCGGCTCCTCCGCGAACGAGAACAACC
GTTCATCATTATTGGCATCCTCAACTTCGCCATCTCGGCCTCGTGGTCCT
CTTCCACCTCATGCAACGGGCCGTGCTGTCGCTGCTGCTGGAAGGAGGGT
CTGGCGGGCCGCCTTGGCAACCGCAATCGCCTTTCGCGCACTGCTGGTGC
TGTGGGCTCACTTTACGGCGCGGTTGCTGCGGAGAGCTGTGGGCGGGCTA
ATCAAGACCAAAGAATCGCGAGGTGGCCAAGGTTCTTGGGAAGGCAGTAG
GCGCGGAAGTGGTATAATGTCACCAGCAGCAGGCTGCTATCGCTACAGCA
GTCCGGAGGGAGGAGCGGGAGGAGGAAGAGGATTGGCGGGAAAGAGGGGA
GTGGTGAAGTCGTCGTCGTCATCGTCGTCACTGCCGTCCTCGTTCGTCCG
ATCCTCACCAGTGTCGCCTCCTGGGGCGTTGTTACAGCAGTCGCTCGAGT
CGGGCTACGGCGGCTTGGAACAAGGGCGAGCAGGAGGAGATGGTGGAGAC
GACGATGGCGGTGGCGGCGAGCATTTTTGGCGAGAGACTTGGCGGCGGCA
TCACGCGCAGCAGCCGCAGCAGGAGCGGTGGCAGCAGCAGGAGCAGCGGC
AGCAGCAGGAGCAGCAGAAGCAGCAGAAGCGGTATCATCAGCCGTGGGAG
GAGGAGGAGGAAGGACAGCGGCAGCGCCGGCAGCAGGAACAGCAGCAACA
TCACCAGCAGCATGAGGATCAGTGGCAACAGCAGCAAAAATTCCAGCAGC
GGCAGAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAACAGCAGCAGCAG
CAACACCACCAGCAGCAGCAGCAGCAGCAGCAACAACAACCCGAGAGAGG
GTTTGACCTCCTGCCACCACCGCCTTCGTCCTCAGCGGGTTCTCTGCAAC
AAAGAGGAGCGGGCGAAGAACGCGCTGACTGCCGTGAAGACATCAACTAC
AACTTCAACAATAGGAGGGCCACCCTTCTTGCTGCTCGAACTAGCGGCGA
CAACGAAAACTGCACCAGCAGCAGCATCGACAGCGGCAGAGCAACTGCTC
CAGCATCGCCCGTAGGAACGACGGTGCATGATCATGCCCACCACAACAAG
CATAACAACTGCTGTAGCAACGGCAGCATGGCGACTGCTGTGCTATGCAC
AAACGAAAACAGCAGTGCTACACCATGGGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTAGTAACAATGAGCGCCGTGGGGGGAGAGGAGGGCTGCTGCGGG
CTGTGCGGGTACACGCTGGAGGCAGGGCAAGCCGTTGTGAGGAGTCCCGG
TTGCGCCCAAGGGTTGATGCTTCACCTCAGGTGCTTTGACGAGAGCGGTG
TAGTCTTCAGTGACGACGCCGACGAAGGCCGACTCAAGTTCGGCTGCGAC
TGCGGGCAGTTTCACTCGGGAGTTGGACTCACGGAAGGCGTTTACGCGTT
TTCTTCGTCGCCAGAATGTGCCTTAAAACCGTCGGCGTCGGATTGGTCTT
CTTCGCTCTCGGGGTTTCCTGGAGGTACGGTGGCGGTGGCGATGGCGGCG
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