mRNA_P-littoralis_Contig769.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig769.22.1
Unique NamemRNA_P-littoralis_Contig769.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig769.22.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.060e-20
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 1 
Query:    1 TLQWWLGHYEVQ------EAVEREPKDLTLHRLAGIIGQVDEELYR----LFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRH 309
            TL+ W+    +Q      ++VER       H L G+I QVDE   R    L   + R AN +T  YP+ Q+A+S  R R+LY+IAGW+LS+I  HVRR+ + E+EWMW VDRH
Sbjct:   85 TLRGWMSDDVIQRVMFGLQSVERGK-----HELCGVINQVDEVNLRRLGGLAENKLRDANVITPTYPRTQVALSIPRRRLLYYIAGWVLSKIVTHVRRHNIQEIEWMWIVDRH 192
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BLAST of mRNA_P-littoralis_Contig769.22.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 8.980e-17
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:   61 DLTLHRLAGIIGQVDEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVDRH 309
            D   H L  II  VDEELYR+FV+E+ K+N+V L YP +   +S AR ++LY+IAGWLLS+ W   RR+ + + EW + V  +
Sbjct:   93 DQGRHYLCCIINVVDEELYRVFVKEREKSNTVALTYPTEIHKISTARGKVLYYIAGWLLSKAWSRKRRHNIPDQEWDFIVQHN 175
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BLAST of mRNA_P-littoralis_Contig769.22.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.160e-16
Identity = 36/92 (39.13%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:   28 EVQEAVEREPKDLTLHRLAGIIGQVDEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVD 303
            +V E V+   + L       ++    +ELY +FV++K++AN + L YP ++  ++  R ++LY+I+GWLLS++W HVRR K+ E EW+ FVD
Sbjct:  143 DVGEKVDAAAEGLFREHFPWLLDLGVQELYGVFVRKKKEANLIKLSYPDKKTRVTKPRAKVLYYISGWLLSKVWTHVRRQKIEEREWVSFVD 234
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BLAST of mRNA_P-littoralis_Contig769.22.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.230e-15
Identity = 32/67 (47.76%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:  103 DEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFVD 303
            ++ELY +FV++K++AN + L YP  +  ++  R ++LY+I+GWLLS+ W HVRR K+ E EW+ FVD
Sbjct:  110 NQELYGVFVRKKKEANLIKLSYPDNKTRVTKPRAKVLYYISGWLLSKDWAHVRRQKIEEREWVSFVD 176
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig769.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K7M3_9PHAE2.060e-2044.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KW14_9PHAE8.980e-1746.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM7_ECTSI2.160e-1639.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5R0_ECTSI4.230e-1547.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig769contigP-littoralis_Contig769:21356..22078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791584.0981135-CDS-P-littoralis_Contig769:21355..214631680791584.0981135-CDS-P-littoralis_Contig769:21355..21463Pylaiella littoralis U1_48CDSP-littoralis_Contig769 21356..21463 +
1680791584.1148357-CDS-P-littoralis_Contig769:21875..220761680791584.1148357-CDS-P-littoralis_Contig769:21875..22076Pylaiella littoralis U1_48CDSP-littoralis_Contig769 21876..22076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig769.22.1prot_P-littoralis_Contig769.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig769 21356..22076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig769.22.1

>prot_P-littoralis_Contig769.22.1 ID=prot_P-littoralis_Contig769.22.1|Name=mRNA_P-littoralis_Contig769.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
TLQWWLGHYEVQEAVEREPKDLTLHRLAGIIGQVDEELYRLFVQEKRKAN
SVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRNKVGEVEWMWFV
DRH
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mRNA from alignment at P-littoralis_Contig769:21356..22078+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig769.22.1 ID=mRNA_P-littoralis_Contig769.22.1|Name=mRNA_P-littoralis_Contig769.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=723bp|location=Sequence derived from alignment at P-littoralis_Contig769:21356..22078+ (Pylaiella littoralis U1_48)
ACTTTGCAATGGTGGCTAGGTCACTATGAGGTCCAGGAGGCGGTGGAGCG
CGAGCCCAAGGACCTCACCCTCCACCGGCTGGCGGGCATCATCGGCCAGG
TGGACGAGGTATGGGCATATGTTCTGCTGTTGTTGCATTGTGTTTCGTTG
GTCGTGTAAAATTTGCGCCTGCATGTGTGGGCGCAAATGGGTATGTTTAC
TTTGCGGATGGGGGCCTTACCAGAGTGTCTCACCTCTCAATTTTCTCACG
GGTCATACGGCATACTCCAAGAGTTCTTGCATGCCTTGCGGCGCTTCGAA
AGACGCGCGAAGTCTGGTAGGTTCTTCATGTGTAGCTCGACTGAAAAGTA
ATTATTTGGCCTACGCTCGTTTGTTTCAGCAGTGAGGGCTGGAATGATGC
CCGCCGTTAAATTTGTGGCGTTAATCTAGGCCTGATCTTTTACAAACCCT
CGTGCCGTCGTGCGTCCTCGCCCGTTGTTCGCTCCCGACTTGTTCCATCT
GTCCGTTTTATGTTTCGAAGGAGCTGTACAGGCTGTTTGTCCAAGAGAAG
AGGAAGGCGAACTCGGTCACCCTCGAGTACCCGAAGCAACAGATAGCCAT
GTCGCCAGCGCGCATGCGGATCTTGTACTTCATCGCCGGGTGGTTGTTGA
GCAGGATTTGGAAACACGTCCGTAGGAACAAGGTGGGGGAGGTCGAATGG
ATGTGGTTCGTGGATCGCCACAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig769:21356..22078+

>mRNA_P-littoralis_Contig769.22.1 ID=mRNA_P-littoralis_Contig769.22.1|Name=mRNA_P-littoralis_Contig769.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig769:21356..22078+ (Pylaiella littoralis U1_48)
ACTTTGCAATGGTGGCTAGGTCACTATGAGGTCCAGGAGGCGGTGGAGCG
CGAGCCCAAGGACCTCACCCTCCACCGGCTGGCGGGCATCATCGGCCAGG
TGGACGAGGAGCTGTACAGGCTGTTTGTCCAAGAGAAGAGGAAGGCGAAC
TCGGTCACCCTCGAGTACCCGAAGCAACAGATAGCCATGTCGCCAGCGCG
CATGCGGATCTTGTACTTCATCGCCGGGTGGTTGTTGAGCAGGATTTGGA
AACACGTCCGTAGGAACAAGGTGGGGGAGGTCGAATGGATGTGGTTCGTG
GATCGCCAC
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