mRNA_P-littoralis_Contig769.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig769.9.1
Unique NamemRNA_P-littoralis_Contig769.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig769.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig769contigP-littoralis_Contig769:9554..12221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size549
Hectar predicted targeting categoryother localisation
Exons2
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791584.0098894-CDS-P-littoralis_Contig769:9553..99851680791584.0098894-CDS-P-littoralis_Contig769:9553..9985Pylaiella littoralis U1_48CDSP-littoralis_Contig769 9554..9985 +
1680791584.0224547-CDS-P-littoralis_Contig769:12104..122211680791584.0224547-CDS-P-littoralis_Contig769:12104..12221Pylaiella littoralis U1_48CDSP-littoralis_Contig769 12105..12221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig769.9.1prot_P-littoralis_Contig769.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig769 9554..12221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig769.9.1

>prot_P-littoralis_Contig769.9.1 ID=prot_P-littoralis_Contig769.9.1|Name=mRNA_P-littoralis_Contig769.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=183bp
LFNNCCSAQRTSTAMSVRGRRGACGRSDYGLPSEDGTANLCCACRRPGPS
DNSTTRAWRHIRAGECWDSLVEWEAAAAGTWPHRRDLLQEPLQANECICS
LVDCGSGLYSKFRKQRDAAAGGSSSLMETGQRALLGRYPSLPQQPEERGP
SWTPAHHWTSSLCWAPNQPRMVGVRSQALSKI*
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mRNA from alignment at P-littoralis_Contig769:9554..12221+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig769.9.1 ID=mRNA_P-littoralis_Contig769.9.1|Name=mRNA_P-littoralis_Contig769.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2668bp|location=Sequence derived from alignment at P-littoralis_Contig769:9554..12221+ (Pylaiella littoralis U1_48)
CTGTTCAACAACTGCTGCTCAGCACAACGCACGTCCACGGCCATGAGCGT
GAGAGGGAGGCGAGGTGCGTGTGGAAGGTCCGATTACGGCCTCCCCAGCG
AAGACGGGACTGCAAACTTGTGCTGCGCCTGTAGGCGCCCTGGCCCCAGC
GACAACTCAACTACGCGAGCTTGGCGACACATTAGAGCCGGAGAGTGCTG
GGACTCTCTTGTAGAATGGGAAGCTGCGGCGGCCGGCACGTGGCCCCACC
GACGAGACTTGCTGCAAGAGCCTCTTCAGGCGAATGAGTGCATATGCTCG
CTGGTTGATTGTGGTAGTGGGCTGTACTCCAAGTTCCGGAAGCAACGTGA
TGCAGCGGCCGGGGGAAGCTCGTCGTTGATGGAGACCGGACAAAGGGCCC
TTCTTGGGCGGTATCCGTCGCTTCCTCAGCAGGTGATCATTAGCCTGTGT
GCATGTTTGTAAAGCGTGGCCGTGTAGACTGCTGTGAGAAAAAGTGTGAC
AGTGCAGACTGCTGTAAACTGCTGTAGACTGGGGTAAGGGAAGGGTGGCG
ATGTAGGCTGCTGCATACTGTAGGGGAGTGGGTGACCAAGAATGTTGCTG
CCGGCTGATGTAGAAAATCGGGTGACCAGAATGACTGCTGTACGACAGCG
GAGAGCTGTATCTCGAGCTTTATTTTCAGACGGTCGGCACGTGAAGTGGT
CAGGTTAGCTCTTCTACAATAAATTCCCCGGAAAAAAAAGCAGCCAAGTG
TGTGTGCAGTAATCTGTTGTTTTTTTTGCACTCGTCTTTATTTAATCGTG
GACAACGCGAGAGCACAAGCAAGCCGATGGGGCTGCTCGGCGGTGTATGG
ATCGTTCTGTTGATGTATATCAACAATTTCGACATGATACTGAAACGAAT
ATCGGCATCCCTTGGGACAGGTGCACAAGGCAGTAAGCACTTCTGGAGGA
TCGAGAAAGTTTCACCCATTACTTACGGTAGTTGGCCTGTAAATGACTTG
TGGAATTGATGTTGTACATGGACTACCGCACAAGAAATCCGTTTTTTATT
GTATGGGTCGTGGTTGAGAGTCAGCTCCCACCTTGCCGTGACCCCATGAC
AAGGCCTCTATGGTGCATAGTGCTGTTCTCTTTGATTTCGATATGTACTA
GGGCCTAGGAGCACTTGAAAGATGGCTGAGACCAAGGAGAAGCACAAACA
AAAAAAAACTAGAGGTTGCGAATTGGGCACAGTTCAAAACATCGATACCG
CAAAGCCTAAAATGCCCCTAAAACGCTGTAAGTTATTATTCTAAGGTTTC
CCCACTGTTTTTCAAGTTATGTTTTTCAAGTTATGGAAAACACTGTTAGG
AAAAGCCCCGCCTTTTTTTCAAGTTGAGAAACATGCCGCTGCCTGCCGGT
TCGTAATTGCCCGCCCGGGCCGTTGTCGTATTTTTTTTTTCGCACGCCAT
CACCGCCAAAGTAGTGTTGCACATCAGGACATTGCCCAGGACCTGATTCA
CAGAGAATAACTGTTGTCGCTTATGATTCCCCTCTCTGGACACAGAAGAA
CACGCGCCACATACAACGCGTGTAGACAGCTCTTTTATGTAAGGTCGTCG
GTGCCTAGCTATCTGCTGTGATGGCAAGCATCCAAATGTTCATACCATCA
ACGTGAGCTTGTCTGAGAGAGCAAAAAAAAATGTGAAGTGCAACACATCG
GAACTGTTTCTCACCTCCTCCTCCAAGCAGACATCTTTCCGGGTAACCCG
AGACACGGCACGACCCTTCTCATTCTCCCAAGCCCCACATAGCACTACAA
ACAACATTAGTAGCCGTAGTGCTGCTGATCACAGAAACACGGCGAACCGT
CCCTGAGAGAATGTGCGTGTGTGTGCTGTCGCAAAGCTGCCTGCTTGCTG
CTACTGTTCTGATCTGATCTGTGCTGCTGCTTCTGCTGCTGTGTGCGGCT
TCTTCTTCTATTCCGCTTCTTCTCTGATCTGATGATGTAGTACAGAGTTG
CACAAACATCATATCACACCCTACAGCACAAGCAGCAGCAGCAGTTAGCA
GCAGCACGGCAGCAGCCGCATCCGACCTTTCATATGGTCGTGTTGTTCGG
CTTTTGGGGCGAGCACGTCTCATACGAAGAGGTGCTGACAGATGGTTTGA
CACTCCGACTGCTGCTGCTGTAGCTGTGGTGATATCAAAGCGAAGAGGAG
TTGTTTTTGCGCTCTCTCTCTGTGGGTGTATTGGGATAAGTGTAATAAAA
AAGCAACCATTCATTACTTCGTACTGTTTGTGCTTGAAACTACCAAGAAA
CTACTAGAGATTCAAACACACAGCGAACAACCAACCGGCCCAAAGGTATC
ATCATAACATGAAAAACACGAAACCACAAAAGTTTTTCAGACTTTTCCCG
ATTTTTTTCAAGTCATGTCAAGTTATCGCGGCGAGGGATAGCTCTAACGT
GAAAAAAAACGCGGGATAACCTCTAACTTGAAAAACAAATCTGTAACGCG
AAAAACATATGTTACGGGGAATCCGTCTATTGTACCGTTTTTACTATGCA
GCCAGAGGAGCGAGGCCCGTCTTGGACACCTGCACACCACTGGACATCGT
CTCTTTGTTGGGCGCCCAACCAACCCAGGATGGTTGGCGTACGTTCACAA
GCATTGAGCAAGATCTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig769:9554..12221+

>mRNA_P-littoralis_Contig769.9.1 ID=mRNA_P-littoralis_Contig769.9.1|Name=mRNA_P-littoralis_Contig769.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=549bp|location=Sequence derived from alignment at P-littoralis_Contig769:9554..12221+ (Pylaiella littoralis U1_48)
CTGTTCAACAACTGCTGCTCAGCACAACGCACGTCCACGGCCATGAGCGT
GAGAGGGAGGCGAGGTGCGTGTGGAAGGTCCGATTACGGCCTCCCCAGCG
AAGACGGGACTGCAAACTTGTGCTGCGCCTGTAGGCGCCCTGGCCCCAGC
GACAACTCAACTACGCGAGCTTGGCGACACATTAGAGCCGGAGAGTGCTG
GGACTCTCTTGTAGAATGGGAAGCTGCGGCGGCCGGCACGTGGCCCCACC
GACGAGACTTGCTGCAAGAGCCTCTTCAGGCGAATGAGTGCATATGCTCG
CTGGTTGATTGTGGTAGTGGGCTGTACTCCAAGTTCCGGAAGCAACGTGA
TGCAGCGGCCGGGGGAAGCTCGTCGTTGATGGAGACCGGACAAAGGGCCC
TTCTTGGGCGGTATCCGTCGCTTCCTCAGCAGCCAGAGGAGCGAGGCCCG
TCTTGGACACCTGCACACCACTGGACATCGTCTCTTTGTTGGGCGCCCAA
CCAACCCAGGATGGTTGGCGTACGTTCACAAGCATTGAGCAAGATCTAG
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