mRNA_P-littoralis_Contig769.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig769.33.1
Unique NamemRNA_P-littoralis_Contig769.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig769.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig769contigP-littoralis_Contig769:49294..49736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size443
Hectar predicted targeting categoryother localisation
Exons1
Cds size423
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791583.8416412-UTR-P-littoralis_Contig769:49293..492991680791583.8416412-UTR-P-littoralis_Contig769:49293..49299Pylaiella littoralis U1_48UTRP-littoralis_Contig769 49294..49299 +
1680791583.8659334-UTR-P-littoralis_Contig769:49722..497361680791583.8659334-UTR-P-littoralis_Contig769:49722..49736Pylaiella littoralis U1_48UTRP-littoralis_Contig769 49723..49736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791583.854287-CDS-P-littoralis_Contig769:49299..497221680791583.854287-CDS-P-littoralis_Contig769:49299..49722Pylaiella littoralis U1_48CDSP-littoralis_Contig769 49300..49722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig769.33.1prot_P-littoralis_Contig769.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig769 49300..49722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig769.33.1

>prot_P-littoralis_Contig769.33.1 ID=prot_P-littoralis_Contig769.33.1|Name=mRNA_P-littoralis_Contig769.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
MAAWATDKSAGFDVTANNVGKICFEFNCGFGFLGLLRFSDFEGLGLFGSL
ILEGCFHVCVFEPALNVSRSTCEKCSSGRYTGTLQLILPALVPTFRTYLS
PNERIFRSSNCCDVVCCHPIFSGTLVCVGFEEYTSDALSH*
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mRNA from alignment at P-littoralis_Contig769:49294..49736+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig769.33.1 ID=mRNA_P-littoralis_Contig769.33.1|Name=mRNA_P-littoralis_Contig769.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=443bp|location=Sequence derived from alignment at P-littoralis_Contig769:49294..49736+ (Pylaiella littoralis U1_48)
GAAACAATGGCGGCCTGGGCAACGGATAAAAGCGCTGGGTTTGATGTCAC
GGCAAACAACGTAGGAAAGATTTGTTTTGAATTTAATTGTGGATTTGGAT
TTTTAGGCTTGTTAAGATTTTCGGATTTTGAAGGATTGGGTTTGTTTGGT
TCTTTGATTCTTGAGGGTTGTTTTCATGTTTGCGTCTTTGAACCAGCTTT
GAACGTTTCGCGTTCTACCTGCGAAAAGTGCTCGTCGGGCCGTTACACCG
GAACTTTACAACTGATTTTGCCGGCATTGGTCCCGACATTTCGTACCTAC
TTATCGCCCAACGAACGTATCTTCCGCAGCTCAAATTGTTGTGATGTTGT
ATGTTGTCATCCCATATTCTCTGGCACACTAGTCTGTGTTGGGTTCGAAG
AATATACGAGCGATGCTTTAAGCCACTGAAATTTAGGAACTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig769:49294..49736+

>mRNA_P-littoralis_Contig769.33.1 ID=mRNA_P-littoralis_Contig769.33.1|Name=mRNA_P-littoralis_Contig769.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig769:49294..49736+ (Pylaiella littoralis U1_48)
ATGGCGGCCTGGGCAACGGATAAAAGCGCTGGGTTTGATGTCACGGCAAA
CAACGTAGGAAAGATTTGTTTTGAATTTAATTGTGGATTTGGATTTTTAG
GCTTGTTAAGATTTTCGGATTTTGAAGGATTGGGTTTGTTTGGTTCTTTG
ATTCTTGAGGGTTGTTTTCATGTTTGCGTCTTTGAACCAGCTTTGAACGT
TTCGCGTTCTACCTGCGAAAAGTGCTCGTCGGGCCGTTACACCGGAACTT
TACAACTGATTTTGCCGGCATTGGTCCCGACATTTCGTACCTACTTATCG
CCCAACGAACGTATCTTCCGCAGCTCAAATTGTTGTGATGTTGTATGTTG
TCATCCCATATTCTCTGGCACACTAGTCTGTGTTGGGTTCGAAGAATATA
CGAGCGATGCTTTAAGCCACTGA
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