mRNA_P-littoralis_Contig1194.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1194.5.1
Unique NamemRNA_P-littoralis_Contig1194.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1194.5.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.850e-22
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:    7 YCECVGEPQPMKDFTQREERRVAARQHPGTCGVAMAGLIAAVETEDVRQTASRRQQEATFKSFRNQACYDAARALNVRGAGVQVRRNRCFEKACQALWPGDDPI 318
            YC     P P+ D ++  ER+ AA+QH G CG   A  IA ++   V   A+    E T K  RN+ACYDA  ALN RG GVQ+RR +CF  AC+A+WP D P+
Sbjct:   68 YCNHDTPPGPLPDISKLPERQAAAQQHAGLCGKYHAEHIANIDVTMVETRAAGA--EITTKRMRNKACYDAGTALNARGRGVQLRRQKCFTHACRAVWPDDQPL 169
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BLAST of mRNA_P-littoralis_Contig1194.5.1 vs. uniprot
Match: A0A6H5KV53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV53_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 9.100e-17
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:   55 REERRVAARQHPGTCGVAMAGLIAAVETEDVRQTASRRQQEATFKSFRNQACYDAARALNVRGAGVQVRRNRCFEKACQALWPGDDPIDEWT 330
            R++   AA++HPG CGV +AG    V  +DV   A RR    TF    NQ C+DAA+ L V G GVQ+ R  CF +A +A++PG+   D+W 
Sbjct:   43 RDQGVEAAKEHPGLCGVYLAG----VSFDDVLAAAERRGVSVTFNVLLNQCCFDAAKKLRVGGMGVQLARKECFTQAFRAVFPGNGTPDQWV 130
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1194.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXC7_9PHAE1.850e-2246.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV53_9PHAE9.100e-1743.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1194contigP-littoralis_Contig1194:7757..9766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size346
Hectar predicted targeting categoryother localisation
Exons2
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789502.3786135-CDS-P-littoralis_Contig1194:7758..78961680789502.3786135-CDS-P-littoralis_Contig1194:7758..7896Pylaiella littoralis U1_48CDSP-littoralis_Contig1194 7759..7896 -
1680789502.3917484-CDS-P-littoralis_Contig1194:9562..97661680789502.3917484-CDS-P-littoralis_Contig1194:9562..9766Pylaiella littoralis U1_48CDSP-littoralis_Contig1194 9563..9766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1194.5.1prot_P-littoralis_Contig1194.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1194 7759..9766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1194.5.1

>prot_P-littoralis_Contig1194.5.1 ID=prot_P-littoralis_Contig1194.5.1|Name=mRNA_P-littoralis_Contig1194.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
SLYCECVGEPQPMKDFTQREERRVAARQHPGTCGVAMAGLIAAVETEDVR
QTASRRQQEATFKSFRNQACYDAARALNVRGAGVQVRRNRCFEKACQALW
PGDDPIDEWTAAGF
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mRNA from alignment at P-littoralis_Contig1194:7757..9766-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1194.5.1 ID=mRNA_P-littoralis_Contig1194.5.1|Name=mRNA_P-littoralis_Contig1194.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2010bp|location=Sequence derived from alignment at P-littoralis_Contig1194:7757..9766- (Pylaiella littoralis U1_48)
AGCCTATATTGCGAGTGTGTTGGTGAGCCTCAGCCTATGAAAGACTTCAC
CCAGCGTGAAGAGCGCAGGGTGGCGGCGAGGCAACATCCTGGAACTTGTG
GCGTCGCGATGGCGGGACTTATCGCTGCTGTCGAAACGGAGGACGTCCGG
CAAACGGCCTCTCGGAGGCAGCAGGAGGCTACATTCAAATCCTTCAGGAA
TCAGGTCAGCACTCGCGGGATGAGAGAACATGTATGTGAGGGTTGCTGTA
GTTCGGCGGCTGCTGCGTGCGTCTGATTGTCGTTTGCGTGTGTTAATCGT
CGGGTGTTGTCGCACATAGTGGCCATGCCGTGTTGTCGACTGAAGTGCGT
TTGCTTCGTCGCTTCGTGCTTGAGAATTTCCTGCAGCAGTTAGTTCTTGT
ATCATACATTTCGAAGCACACCACAGCAGTAGTTCTAAATGTTTCTGCAT
CTGCCTCCACCTACCCTGTATACCGTAAACTGAAATCAAACCCCCCGGGG
GAAATTGACGTACCGGGGGGGTTAGTTATTTTTGACTCAGTGCTACCCCG
GGGGGAAGTCAATTACCCCGGGGGTTGTGCAAAATATTTGTGGTCCACAC
ACACACAGAGTAGCGACCCGCGATGGAAAAGATTTACGAGCAAGCGTTCA
AGAAGCAGAGGGTTGAGGAACGTAAAAAGAGCGCAGAATGTGAACAGAAA
GAAGAAAGCAAGGAGGACAGTCGTACGTTATAACACAAATCTCGCTCGAA
GCGCAGATCTGCAGATGAACTTTCCGTACCCTATCATGTTCATTGTGCTT
CGCGAAGCCAAAAACCCGACCTTAAAAAACACGGGAAATACATCCCCGGG
GATGTCATGGGAAAATTGGTACCCCGGGGGAAATTGACGTACCCCGGGGG
AGCTGCTTTTTTTTGTCGAAAACGATCTACCCCGGGGCTAAAACTCAGTA
TGCATGCTTCAAGGCCGAAAAGGTGATGGGGGGGGGGGAAAACTCTAAGG
GGGGGGGAAAACTCCGTAGTTTACGGTAATAACATTATATCGTATCATAC
ATGTGGATAACTATGTTACTTTTACTTGTCTGATACTTCGTTCGTACCGG
TATCTTACAACAGCAGTCCCAAACTTGCATGATAGTAGTATCGCATCACG
TGATACACACCACCAGGTACAGCAGTAGTGTTCACGCGCCATGATTTTAC
TTCGAAAGCGCGAAGTTCCGGGTGCATACAAGTTCGCCTACTGATGGATT
GGTGCATACAAGTTCGCGTCGTTCGTGTACATATTGAGTTGCATGCACAC
CCCTTTCCAGGTCCTAATAATTCACGTATGTACGTATCATATTTCTGCAC
TTGGTATTTTACACCTTCTGCACTTGGTATTTTACACCGTGAGCATACCG
GTATCGCACGTGTGCATGGCGAGTACATTGTGTGCAGTTTTGAACTGTTT
CAAGTTCAAATGTTGTATGGATAGTAAAATCATATCATAGGCGGTGATAT
TTTCATTTCTGGCGACAATTTCCGACAATTTCCGTATATCCCATATACCG
GATGTTACAGTACATACCACACTCCCTAGGCCGATGTTTACAGCTCGATT
GCTGCGTAACAAAGAGAATGCCGAAACCAACTTACCAAGTACATGTTTTC
GAGGAGGACCTTACAATATCTTTATGATATCACTACTATCGGCAGTGGCA
CTCGTCTTGATCCTTTCAAATCAGACCAGGTTTGTTTTGTTCGCTGGCCT
TAGTACATCACATACTTCGTATATGAAGACCACACCAAGTGTTGCTGTGC
GCTTGTACAGTTTTTGCCTCATTTGCGGGTTTTGATCGCTTCCAAAACCG
TGTGCCGAACCCCGTGGCAGGCGTGTTATGACGCGGCGCGCGCCCTGAAT
GTGCGGGGAGCGGGGGTTCAAGTCCGTCGCAACAGATGCTTCGAGAAAGC
GTGCCAGGCGCTTTGGCCTGGGGACGATCCGATTGACGAATGGACTGCTG
CTGGTTTCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1194:7757..9766-

>mRNA_P-littoralis_Contig1194.5.1 ID=mRNA_P-littoralis_Contig1194.5.1|Name=mRNA_P-littoralis_Contig1194.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig1194:7757..9766- (Pylaiella littoralis U1_48)
AGCCTATATTGCGAGTGTGTTGGTGAGCCTCAGCCTATGAAAGACTTCAC
CCAGCGTGAAGAGCGCAGGGTGGCGGCGAGGCAACATCCTGGAACTTGTG
GCGTCGCGATGGCGGGACTTATCGCTGCTGTCGAAACGGAGGACGTCCGG
CAAACGGCCTCTCGGAGGCAGCAGGAGGCTACATTCAAATCCTTCAGGAA
TCAGGCGTGTTATGACGCGGCGCGCGCCCTGAATGTGCGGGGAGCGGGGG
TTCAAGTCCGTCGCAACAGATGCTTCGAGAAAGCGTGCCAGGCGCTTTGG
CCTGGGGACGATCCGATTGACGAATGGACTGCTGCTGGTTTC
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