mRNA_P-littoralis_Contig769.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig769.30.1
Unique NamemRNA_P-littoralis_Contig769.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig769.30.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 5.790e-28
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 2 
Query:   83 GGEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRNLSQDLIEHRFSHYR 295
            G +  WKKHFIT +SWFDLRL ILGFVS CR+LF+ P  FQ+DSLSPN RRF+ PRN SQD+ EHRFSH R
Sbjct:  120 GDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIR 190
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BLAST of mRNA_P-littoralis_Contig769.30.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.150e-15
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 2 
Query:   86 GEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRNLSQDLIEHRFSHYR 295
            G+  WKKHFIT  SW D+R+CILGFVS CR+LF+  + F+V    P    FI  RN  QD+IEH F H R
Sbjct:  602 GDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPH-FINQRNCGQDVIEHCFGHMR 670
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BLAST of mRNA_P-littoralis_Contig769.30.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.660e-13
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 2 
Query:   98 WKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRNLSQDLIEHRFSH 289
            WK HFIT  SW D+R+CILG VS CR+LF++ + F++  LS +   FI  R + QD++EHR+ H
Sbjct:   91 WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLS-DVPHFINLRCIGQDIVEHRYGH 153
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BLAST of mRNA_P-littoralis_Contig769.30.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.710e-8
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 2 
Query:   86 GEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRNLSQ 262
            G+ AWK HFIT  SW D+R+CILG VS CR++F+  + F++  LS +   FI  R + Q
Sbjct:  479 GDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLS-DVPHFINLRYIGQ 536
[Close]
BLAST of mRNA_P-littoralis_Contig769.30.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.530e-5
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = -1 
Query:   82 RHVLTKPRMHRRRSNHDSRVMKCFFHACSPP 174
            R V TKPRM RR+SN DSRVMKCFFH  SPP
Sbjct:  381 RQVATKPRMVRRKSNQDSRVMKCFFHPRSPP 411
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig769.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K5I6_9PHAE5.790e-2870.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE1.150e-1554.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE5.660e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE1.710e-847.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW14_9PHAE5.530e-577.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig769contigP-littoralis_Contig769:24709..25228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size307
Hectar predicted targeting categoryother localisation
Exons2
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791583.6333573-CDS-P-littoralis_Contig769:24709..247531680791583.6333573-CDS-P-littoralis_Contig769:24709..24753Pylaiella littoralis U1_48CDSP-littoralis_Contig769 24710..24753 -
1680791583.644121-CDS-P-littoralis_Contig769:24966..252281680791583.644121-CDS-P-littoralis_Contig769:24966..25228Pylaiella littoralis U1_48CDSP-littoralis_Contig769 24967..25228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig769.30.1prot_P-littoralis_Contig769.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig769 24710..25228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig769.30.1

>prot_P-littoralis_Contig769.30.1 ID=prot_P-littoralis_Contig769.30.1|Name=mRNA_P-littoralis_Contig769.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
GGGGRPPAWRSGALDASRACGFYLAACRRRARVEEALHHARVVVRSSPVH
PRFREHVSFPFRPSCDFPGGQPFAERPTLHRTTKLEPGLDRAQVFALPRE
QR
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mRNA from alignment at P-littoralis_Contig769:24709..25228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig769.30.1 ID=mRNA_P-littoralis_Contig769.30.1|Name=mRNA_P-littoralis_Contig769.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=520bp|location=Sequence derived from alignment at P-littoralis_Contig769:24709..25228- (Pylaiella littoralis U1_48)
GGTGGGGGAGGACGGCCACCGGCATGGCGGTCGGGCGCTTTGGACGCCTC
TCGCGCCTGTGGTTTCTACCTTGCAGCTTGTAGGCGGAGAGCACGCGTGG
AAGAAGCACTTCATCACGCGCGAGTCGTGGTTCGATCTTCGCCTGTGCAT
CCTCGGTTTCGTGAGCACGTGTCGTTTCCTTTTCGACCGTCCTGCGATTT
TCCAGGTGGACAGCCTTTCGCCGAACGACCGACGCTTCATCGGACCACGA
AACTTGAGCCAGGTTAGTGCCACTTTTGACATGTCGCGCGCTCGATGCCT
CCGCGGAAAATCGGCATAGAGGAAGTCCCTGTTCGTGTCTGAATTAGGGA
AGATACTTTTGATGCTACTGGCGTGGGATATGGCCACATTTTTTGCGGCA
TGACTCCGACCTCTCAGCCACCCAATGGATTGACAGCCTTTTGCGCTGTC
CGCCGTCGACGTCTTGCTGCAACAGGACTTGATCGAGCACAGGTTTTCGC
ACTACCGCGGGAACAACGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig769:24709..25228-

>mRNA_P-littoralis_Contig769.30.1 ID=mRNA_P-littoralis_Contig769.30.1|Name=mRNA_P-littoralis_Contig769.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig769:24709..25228- (Pylaiella littoralis U1_48)
GGTGGGGGAGGACGGCCACCGGCATGGCGGTCGGGCGCTTTGGACGCCTC
TCGCGCCTGTGGTTTCTACCTTGCAGCTTGTAGGCGGAGAGCACGCGTGG
AAGAAGCACTTCATCACGCGCGAGTCGTGGTTCGATCTTCGCCTGTGCAT
CCTCGGTTTCGTGAGCACGTGTCGTTTCCTTTTCGACCGTCCTGCGATTT
TCCAGGTGGACAGCCTTTCGCCGAACGACCGACGCTTCATCGGACCACGA
AACTTGAGCCAGGACTTGATCGAGCACAGGTTTTCGCACTACCGCGGGAA
CAACGG
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