mRNA_P-littoralis_Contig769.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig769.29.1
Unique NamemRNA_P-littoralis_Contig769.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig769.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig769contigP-littoralis_Contig769:24235..24589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size323
Hectar predicted targeting categoryother localisation
Exons2
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791583.5716336-CDS-P-littoralis_Contig769:24234..242761680791583.5716336-CDS-P-littoralis_Contig769:24234..24276Pylaiella littoralis U1_48CDSP-littoralis_Contig769 24235..24276 -
1680791583.5823593-CDS-P-littoralis_Contig769:24308..245811680791583.5823593-CDS-P-littoralis_Contig769:24308..24581Pylaiella littoralis U1_48CDSP-littoralis_Contig769 24309..24581 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791583.6011744-UTR-P-littoralis_Contig769:24581..245891680791583.6011744-UTR-P-littoralis_Contig769:24581..24589Pylaiella littoralis U1_48UTRP-littoralis_Contig769 24582..24589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig769.29.1prot_P-littoralis_Contig769.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig769 24235..24581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig769.29.1

>prot_P-littoralis_Contig769.29.1 ID=prot_P-littoralis_Contig769.29.1|Name=mRNA_P-littoralis_Contig769.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MMAVTREETSRRIRAASRNTHKSVLCPRSASRPPSYASFRKRRPDHNPEM
DHPNPYKYGFWRDGPKRGKWGAPLFLHYVPLESAKTCPLKRPLDENVELF
LFLVV
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mRNA from alignment at P-littoralis_Contig769:24235..24589-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig769.29.1 ID=mRNA_P-littoralis_Contig769.29.1|Name=mRNA_P-littoralis_Contig769.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=355bp|location=Sequence derived from alignment at P-littoralis_Contig769:24235..24589- (Pylaiella littoralis U1_48)
GCGAAATCATGATGGCGGTCACAAGAGAGGAAACGAGTAGGCGGATTAGA
GCTGCAAGTAGAAACACGCACAAGTCTGTCTTGTGCCCTAGGTCAGCCAG
CCGGCCACCCTCTTATGCCTCCTTCCGGAAGCGGAGACCAGACCACAACC
CTGAGATGGACCACCCGAACCCCTACAAGTACGGGTTTTGGAGGGATGGC
CCAAAAAGAGGGAAATGGGGAGCGCCGTTGTTCTTGCATTATGTACCCCT
CGAGTCCGCAAAAACTTGCCCGCTAAAGAGAGTTGTCTCATAGTGCCTGC
CGCATTCTGTGAGCCTTTGGATGAAAATGTAGAGCTATTCCTCTTTCTGG
TCGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig769:24235..24589-

>mRNA_P-littoralis_Contig769.29.1 ID=mRNA_P-littoralis_Contig769.29.1|Name=mRNA_P-littoralis_Contig769.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig769:24235..24589- (Pylaiella littoralis U1_48)
ATGATGGCGGTCACAAGAGAGGAAACGAGTAGGCGGATTAGAGCTGCAAG
TAGAAACACGCACAAGTCTGTCTTGTGCCCTAGGTCAGCCAGCCGGCCAC
CCTCTTATGCCTCCTTCCGGAAGCGGAGACCAGACCACAACCCTGAGATG
GACCACCCGAACCCCTACAAGTACGGGTTTTGGAGGGATGGCCCAAAAAG
AGGGAAATGGGGAGCGCCGTTGTTCTTGCATTATGTACCCCTCGAGTCCG
CAAAAACTTGCCCGCTAAAGAGACCTTTGGATGAAAATGTAGAGCTATTC
CTCTTTCTGGTCGTC
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