mRNA_P-littoralis_Contig1194.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1194.1.1
Unique NamemRNA_P-littoralis_Contig1194.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1194.1.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.590e-16
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPK 219
            +LNE WS     G W+S+DEQMV    R    ++R+   KPIK G+K WA+ C SGYCF    DGGF GD K
Sbjct:    8 LLNECWSKLVEPGAWLSYDEQMVKSTARAMFALMRFNKTKPIKTGIKGWAICCPSGYCFVQSIDGGFSGDIK 79          
BLAST of mRNA_P-littoralis_Contig1194.1.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.930e-16
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPK 219
            + N+ WS     G W+S+DEQMV    R    ++RY   KPIKNG+K WA+ C SGYCF    DGGF GD K
Sbjct:   46 VFNKCWSELVEPGAWLSYDEQMVKSTARVMFALMRYNKAKPIKNGIKCWAICCPSGYCFVQSIDGGFSGDIK 117          
BLAST of mRNA_P-littoralis_Contig1194.1.1 vs. uniprot
Match: A0A6H5KPD8_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.240e-15
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPK 219
            +LN+ WS     G W+S+DEQMV    R    ++RY   KPIK+G+K WA+ C SGY F    DGGF GD K
Sbjct:  112 VLNKCWSELVEPGAWLSYDEQMVKSTARVMLALMRYNKAKPIKHGIKCWAICCPSGYSFVQSIDGGFSGDIK 183          
BLAST of mRNA_P-littoralis_Contig1194.1.1 vs. uniprot
Match: A0A6H5JHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH7_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.570e-13
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPK 219
            +LN+ WS     G  +S DEQMV    R    ++R+   KPIK G+K WA+ C SGYCF    DGGF GD K
Sbjct:  209 VLNKCWSELVDPGACLSHDEQMVKSTARVMFMLMRFNKSKPIKLGIKCWAICCPSGYCFVQSIDGGFSGDIK 280          
BLAST of mRNA_P-littoralis_Contig1194.1.1 vs. uniprot
Match: A0A6G0U0A6_APHGL (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Aphis glycines TaxID=307491 RepID=A0A6G0U0A6_APHGL)

HSP 1 Score: 51.6 bits (122), Expect = 7.550e-6
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 1
Query:   49 ISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACF-SGYCFASYTDGGFVGDPK 219
            I+ DE M+ C GRT   + +YMP KPIK G+K+WA AC  +GY        G  GDP+
Sbjct:  366 IAVDESMIACKGRTT--LKQYMPLKPIKKGIKVWAAACSKTGYLLNFDIYQGKQGDPE 421          
BLAST of mRNA_P-littoralis_Contig1194.1.1 vs. uniprot
Match: UPI001F5FAADF (piggyBac transposable element-derived protein 3-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5FAADF)

HSP 1 Score: 50.8 bits (120), Expect = 1.340e-5
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1
Query:    7 LNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCF 180
            LN  +     V Q IS DE M+L  GR++  + +Y P KPIK G+KLWA+A   GY +
Sbjct:  196 LNSNFVKLYNVSQCISIDESMILFKGRSS--LKQYNPMKPIKKGVKLWAIADMDGYMY 251          
BLAST of mRNA_P-littoralis_Contig1194.1.1 vs. uniprot
Match: K0S932_THAOC (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S932_THAOC)

HSP 1 Score: 50.8 bits (120), Expect = 1.450e-5
Identity = 24/55 (43.64%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   28 ACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVAC-FSGYCFASY 189
            A  +GQ++S DE M+   G+  +F+ +YMP KPIK+G+K++A+ C  +GY +A Y
Sbjct:  657 AYTLGQFLSADESMIKYKGKAIRFV-QYMPAKPIKHGIKVFALCCSLTGYIYAFY 710          
BLAST of mRNA_P-littoralis_Contig1194.1.1 vs. uniprot
Match: UPI000B9349D9 (piggyBac transposable element-derived protein 4-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B9349D9)

HSP 1 Score: 49.7 bits (117), Expect = 3.670e-5
Identity = 30/72 (41.67%), Postives = 39/72 (54.17%), Query Frame = 1
Query:    7 LNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACF-SGYCFASYTDGGFVGDPK 219
            LNE +       + I+ DE MV   GRT   + +YMP KPIK G+K+WA AC  +GY        G  GDP+
Sbjct:  274 LNEKFFSNFNPSRNIALDESMVAFKGRTT--IKQYMPLKPIKRGIKIWAAACSKTGYLLQFEVYQGKQGDPE 343          
BLAST of mRNA_P-littoralis_Contig1194.1.1 vs. uniprot
Match: UPI000763A92F (piggyBac transposable element-derived protein 4-like n=1 Tax=Diuraphis noxia TaxID=143948 RepID=UPI000763A92F)

HSP 1 Score: 49.3 bits (116), Expect = 4.870e-5
Identity = 30/72 (41.67%), Postives = 39/72 (54.17%), Query Frame = 1
Query:    7 LNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACF-SGYCFASYTDGGFVGDPK 219
            LNE +       + I+ DE MV   GRT   + +YMP KPIK G+K+WA AC  +GY        G  GDP+
Sbjct:  135 LNEKFFSNFNPSRNIAIDESMVAFKGRTT--IKQYMPLKPIKRGIKVWAAACSKTGYLLQFEVYQGKQGDPE 204          
BLAST of mRNA_P-littoralis_Contig1194.1.1 vs. uniprot
Match: A0A1Y1MT51_PHOPY (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1MT51_PHOPY)

HSP 1 Score: 48.9 bits (115), Expect = 5.910e-5
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 TMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVAC 162
            T L++T+       Q ++ DE MV   GRT   + +YMP KPIK G+K+WA+AC
Sbjct:  138 TYLSDTFLNVYTPAQNLAVDESMVAFKGRT--HLKQYMPLKPIKRGIKIWALAC 189          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1194.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KG44_9PHAE1.590e-1650.00DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KQZ5_9PHAE1.930e-1650.00DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KPD8_9PHAE2.240e-1548.61DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JHH7_9PHAE3.570e-1347.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0U0A6_APHGL7.550e-646.55DDE_Tnp_1_7 domain-containing protein n=1 Tax=Aphi... [more]
UPI001F5FAADF1.340e-544.83piggyBac transposable element-derived protein 3-li... [more]
K0S932_THAOC1.450e-543.64DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
UPI000B9349D93.670e-541.67piggyBac transposable element-derived protein 4-li... [more]
UPI000763A92F4.870e-541.67piggyBac transposable element-derived protein 4-li... [more]
A0A1Y1MT51_PHOPY5.910e-544.44DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1194contigP-littoralis_Contig1194:3537..4255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0T9J8
PFAMsDDE_Tnp_1_7,Tnp_zf-ribbon_2
Model size219
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.09e-05
EggNOG OGs28PUT@1|root,2QWHD@2759|Eukaryota
DescriptionTransposase IS4
Cds size216
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789502.3261888-UTR-P-littoralis_Contig1194:3536..35391680789502.3261888-UTR-P-littoralis_Contig1194:3536..3539Pylaiella littoralis U1_48UTRP-littoralis_Contig1194 3537..3539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789502.3358989-CDS-P-littoralis_Contig1194:3539..36721680789502.3358989-CDS-P-littoralis_Contig1194:3539..3672Pylaiella littoralis U1_48CDSP-littoralis_Contig1194 3540..3672 +
1680789502.3440602-CDS-P-littoralis_Contig1194:4172..42551680789502.3440602-CDS-P-littoralis_Contig1194:4172..4255Pylaiella littoralis U1_48CDSP-littoralis_Contig1194 4173..4255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1194.1.1prot_P-littoralis_Contig1194.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1194 3540..4255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1194.1.1

>prot_P-littoralis_Contig1194.1.1 ID=prot_P-littoralis_Contig1194.1.1|Name=mRNA_P-littoralis_Contig1194.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWA
VACFSGYCFASYTDGGFVGDPK
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mRNA from alignment at P-littoralis_Contig1194:3537..4255+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1194.1.1 ID=mRNA_P-littoralis_Contig1194.1.1|Name=mRNA_P-littoralis_Contig1194.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=719bp|location=Sequence derived from alignment at P-littoralis_Contig1194:3537..4255+ (Pylaiella littoralis U1_48)
ACGATGCTGAACGAGACGTGGAGCGGGGCGTGTCTTGTGGGGCAGTGGAT ATCTTTCGACGAGCAGATGGTGTTGTGCGTGGGCCGGACCGCGAAGTTCA TGCTGCGGTATATGCCAAAAAAGCCCATCAAGAACGGTGGGTGATTATCT TTCGGGTCGTGTTTCAGGTTTCATTTGTTTTTTGTGGGAATTCTGACTAT GTTTGTGGTACGAACCGCTACTTTTCCACCCTTTTGCGTGCGAACGAGAC GAAAGTGCCACGGAATGTCGAATCTTCGGCTAGCATGCCTGACGAGAGCG ACGTTTGAAGATGTATGCAAGCGTGCACCGTACTGCGAAGTTCATGTCGC GGTACAAGTAAAAACAAAACATGATGGACCGTGGGTAGTTCATTTTGGAT GGTGTCTTTCTTGTGATGTGTTTGGGGTTCCTGTGATGTTGATTGAATTC GGGATAAGACTCGTAAATTTTCCTCTGTCGTCGCGTGCGAGCGCCGCAAG AGTGTTGCAGACTGTGGGACGTGCGGCTGGCATGCGTCGCAAGGGTGACA TATGATCCGGAATCTATATGTGTTCGTAACGAGAGGCAATGCCCACCATG TGACGCGCTCGCTTGCATGCCCGCGCTTTTTCTCAGGGCTGAAACTGTGG GCAGTGGCATGTTTCTCTGGCTACTGCTTTGCGAGCTACACCGACGGCGG TTTCGTCGGAGATCCGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1194:3537..4255+

>mRNA_P-littoralis_Contig1194.1.1 ID=mRNA_P-littoralis_Contig1194.1.1|Name=mRNA_P-littoralis_Contig1194.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig1194:3537..4255+ (Pylaiella littoralis U1_48)
ATGCTGAACGAGACGTGGAGCGGGGCGTGTCTTGTGGGGCAGTGGATATC
TTTCGACGAGCAGATGGTGTTGTGCGTGGGCCGGACCGCGAAGTTCATGC
TGCGGTATATGCCAAAAAAGCCCATCAAGAACGGGCTGAAACTGTGGGCA
GTGGCATGTTTCTCTGGCTACTGCTTTGCGAGCTACACCGACGGCGGTTT
CGTCGGAGATCCGAAG
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