mRNA_P-littoralis_Contig764.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig764.11.1
Unique NamemRNA_P-littoralis_Contig764.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig764.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig764contigP-littoralis_Contig764:19579..24378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791577.9045248-CDS-P-littoralis_Contig764:19580..196601680791577.9045248-CDS-P-littoralis_Contig764:19580..19660Pylaiella littoralis U1_48CDSP-littoralis_Contig764 19581..19660 -
1680791577.9209666-CDS-P-littoralis_Contig764:24296..243781680791577.9209666-CDS-P-littoralis_Contig764:24296..24378Pylaiella littoralis U1_48CDSP-littoralis_Contig764 24297..24378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig764.11.1prot_P-littoralis_Contig764.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig764 19581..24378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig764.11.1

>prot_P-littoralis_Contig764.11.1 ID=prot_P-littoralis_Contig764.11.1|Name=mRNA_P-littoralis_Contig764.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
PSFFLHRVRELLDLGDQPVDMSYYGPQALFCCIPLLSVFPYVLSLPHPLP
MICS
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mRNA from alignment at P-littoralis_Contig764:19579..24378-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig764.11.1 ID=mRNA_P-littoralis_Contig764.11.1|Name=mRNA_P-littoralis_Contig764.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4800bp|location=Sequence derived from alignment at P-littoralis_Contig764:19579..24378- (Pylaiella littoralis U1_48)
CCGAGCTTCTTCCTCCATCGCGTACGTGAGCTCCTCGATCTCGGTGACCA
GCCAGTCGACATGTCTTACTACGGACCCCAAGGTCAGATACCCTGCTTTT
GCATGCGTATATGGGGCATAATGAGACTCTTGTCATGCGTGTCCAGCCTT
TAGCTCTGCATGGCGGCGGCATGTAACAGAGTACTCTATGAGTTGGTGTT
TGCGTTCCAGAACGAGGCAGAACAGAGACTCGCTGCCTCGCTCGACATAT
ATACCCACTGGCTGCTCATAACATGGTGTCTAATCCGAGGAAAGTTTGCT
CACGCAATGCGCGCGACTACACACCTAACATGGTGTGTAATCCGAGGAAA
GGTTGCTCACGCAATGCGCGCGACTACACACCTAACATGGTGTCTAATCC
GATAAAAGTATCCTCACGCAATACGTACGACTATACACCTAACATGGTGT
CTAATCCGATGAAAGTATGCTCACGCGATACGTACGACTATACACCTAAC
ATGGTGTCTAATCCGAGGAAAGTCGTATGCTCACGCGAATCGCGCGACTA
CACACCTAACATGGTGTCTAATCCGAGGCAAGTTGTATGCTCTCGCGATG
TACACGCCTGTGCTCATGTGCTTGGTTGCCCCGTCTGCTGAATTAGTTTT
TTGTTCTTTTTTAGTTTCATCCGCATTTCTAGGGTCGCCCTTGATACCAG
TATTTATTACGAAATAAATGCTGCTTTTTCCCGCCGTATTTTTATTTTTT
TTCACATCTATCTGGAGTCTGTCCTGCTTTTGTACAGCAGTATAACTTTC
TACGTCTTTGCACTTCGCACTGCTGTACGTGAAGCACGCCGAGAGCCCGG
AGCTCTGCGTATGTCTTGTCCGTCTCTGCACGGCTGTGCACGGCTGTATA
CATGTGATAGCCTGCTGATTGATGATGCTCGTACGGTGGACAGAGTTGTT
TTATCATATCGTACATACTCCGTATTACATGTCTGGCTTATTTTTTTTAC
TTCTGCTGTACCCCACAAATGTTGCTGCGCGCCTGTTGCTATTTTTGAGT
GTGTGTACGCATATGTATATGCCCGCGGGTGAATGGGGTTCCATGCTGAT
GTGGTGCTGGTATCACCTGGGAGAGACGTGTGAAGTGTCATGGTGTTGGT
AACACCTGGCGATAATTCCATGGAGATGGAAGGGAGGCACCGGGACCTTA
TGGGGTTAGGCACGCTTTGATAAGCTCGTGCTCTGAAAATCTCTGTCGCC
GTATGACAAGCCGCGAATTTTTTTATAGGCATTAAAGTCGAGGCATATGG
CAGTTGACGATCACCACGTAGCCGAGGCTTAGCACCCCAAGGTAAGAGTT
ATGTCCCGATCCACTATCATATCAGGTCAGTCTACCCCGAGCGGTGGACA
GGTATCCTCCGGTTGAGTATATATATGTGTGCTATGCATGCCCCGCAGCT
GCACCGGTTCGCGCTGTGGTTTCAGGCAGGTGTATTCCGACATCCATTTT
GTTTTCTTCACACTATAAAAGACTACACACTATACTAAATAGACCTTGTA
CTTGTATTTTTTTCCATGTTTTCTATCTTCCGACATGTATTTTTTTTCTC
TTGATATTCTACACGGAATACAACAGACTGGTTTATGATACGATTAACCA
AAATACATCCTTGAACATTTTTTTACATGCAGTGCCGCCGATCTGCCTGC
TGTAATGTACGACTTTTTTTTTGTGTGCCCTCTGGGTCCCTTGTGGCCCT
TCGTGCTTTCTAAACACTAATCTTTTCCTGCTGTACGACTTTTTCTTTTG
TTTCTTTTTTGCCCTGGGTCCCTTGGCCCCTCGTTTTATTTATTGTTCCT
TTTTGACTTTACTATTTTTATGAACACTTTTCGTTCGTCTTCTAGGACGA
TACATAGTTTTTTTTTATTTTTGATTTCTCCTGCATGATCTGTTGCTTTA
TTTCACTGCATGATCTTTTGATCTATTTCCCTTTTACCCTTGATGCGTCC
CAAAGTTTTCGCCTACCTCACAGCAGTGCTGTTACTGAAGTACTTGTACT
TGGAATATATATATCTGGAATTAATTTTTCTTCGTCTTCCCTATTTCGTC
CCGCCTTGAAGGTTGAATTTTGTTTTGTTTTGTTTTTCCATTTTTTTTTC
CAGGATTGATAAAGTATGCTCGACCCAGGAAAGTCCCAGGTATATGAGAG
CTGCCTTCTTCCTGTCGTTGCCGTTTTCATTTTTATTATATTCCTTGAGA
ATCTGTGTGTATTGAGTTATTTCAAAGTTAACAACCAAGACTACTACTGC
TGTACTCGTATATTATTACTCAGAGCAACAGCAGTAAAATATCATTGCGA
TTTTATATCGTACTTTGTCGTGCACGCACGTTAAACTTACCGTTCCTTCT
TGTTTTTTTTTTTCCACTCTCTGAAACAACAGCAGATCGCGCACTGAATG
GCGCACACCTAAACTTTCACCCTATAATTATGCTTCATGATTTCCCTTCT
ATTTTGTTTTTCTCCTGTCCCAACAATTTTTTTTCTTGTGAGTTGTTGCT
TTGCCTGCCTGGGTTTTCAGTTTACTCTTCCTTTTCTTCGATAATAATGT
TGATTGGAATGCTAGTGCACCGCTACGTCGCTATGAATGTTTTTTTTCTT
CCTTCTGCCTTGACGTGCGAGTCTTTTTTCTTGCATGCTCCTTGCCAGGA
CTCTGTATGCTCGACTAAACAGGTTACAGGTGGATGAGAGCTACTTTTTC
CTGTTGTTGTACTTGTTTTTTTTGTTTTGTTTCTTCCGTCTCAGGGTCTC
TCCGTTTGGTTTGCTTTCGGCGTGTCGTGTTTCCGTCTTTCTCTTTAACT
TGGAGTGCACTGTATGTCGTATGATTTTTACCAGGGATGAATGCATGCTC
GATCCCAAGAGTTGAAGGTATATGAGAGCTGACTTCGCCCCTGTTGTTTT
TTTTTTTTTTCTTTCTTCGTTTTGTTCTCCTCTATTTTTTTTTGTGTCTT
CCCCTTCCACTTGATTGAGGTCGCCGCGATAAAATGCCTAAACACCCGAA
TCTACACACAGCAGCAGCTATTATTCTTCTTTGTTTTGACAGCAGCTATG
TCATATATATTTTGTTGTTTATTTTTCGTTTCTATTTTGGTTTTGCTGCC
TTTGTCTTGCTTGGTTTATTCCTGAGTTGTGTGTTTTATCTGGGTTTGTT
TCCTCTCTTGGGTGCTTTGAAAATGTCTTGTATTTTTTTCTTTTCGTTGT
TGGTTTACTGCGGAATACATGTGTGTTCCGATAATGGTGATGATCTTATT
CTTTTTATTTTGTGATTTTGTTGTGCAAATATCAATAAACATCGTACGAA
GTATATTTTTCCGACTCGCTTGGTTTGATTTCTCTTTCTCTTGCGAAGTT
TGGCTTGCAGGTTGGTTTGTTCGACCCCAGGAAGTGTACACAGGTGACTG
AGAGCAGCCTTCCTTTGTTTATTTTTCTTTTATGCATTATATTATGAGCC
TCGTTTTTTTGTTTTAATACATACAGTCGTTTTTGTTTCGTTTTTATTTT
CCTTATTCGCTTCTTGTTTTTTTTTTTTGTTGTTGTTCGTCTTCTTTTCC
CGTCATTTATGTGTGCATGCAGGTTGGTACGTTCGACCCGGAAAGTATTG
AGGTGATTGAGAACTACCTTTCCTTTGTTTCAATACTCTTGTTTGAATCG
ACCTCGTCTTCTTTGTTTTCGGCTTGTATTTTTTTGTTCACTTCGTCTCT
GGTTTTATCATACTACCCCTGGCTACATAAATTTTTCTCTTCGTAATGGG
CCAAACAGCCACTCACTTTCGTGTACTGCATAGCACATTCTTGACAACAC
GGAAAATGCGACGACAGACAAGTTATTTTTCTACTCTTTTTTCTTTCTTC
TGGTCTCTTCATTACGTGCCAAACAGCCACTTTAGTGTACTGCATGGCAC
ATTCTTGACAACAAGGAATGCGACGATGGTATCATTTTTTTTAATATTAT
TCTTGATCGTTCAAAGTTGTTTTCGTATGAATGACGCAGCAGTATTGCAT
ATTACATTCCTCATGGCGTTCCATATGTGCCAAACAGCCACTTGCGTGTA
CTGCATGACACCTTCTGGAACCCATGGAATGGCAGACCGATGTCTTGACT
GTTTTTTTCTCTTCTGTGCCTTCTCAATTACAGCGGCTTGCATACTTTGT
TCCATGTTTTTTTTCCGGGGCGGGTCATGCATGCCGCATGTTCTGACAAG
TGCATCAGACGGCTAGAACCTGCGTGCACATGCTCGCGTACTGCAGTTGC
AGCAAACACAGAAAAGGCGCACCATGCGCCCAGTACCGTCCATTGGTTTT
GGGTGTATGTTTGCCGTCGCTACTGCTGCTGCTGTGCTGCTCCCGCTGTT
TCTTCGGCTGTTGCTGCCGCTTCTGCTGTTGCCTCTTCTCTTCCGTCTGC
CCTGTCTGTCTGCCTGTTCGTCCGTCTTCCTGTCGTTGCTGTCGGCCCTG
TCCCGTGTGTCTGCTAGCCGTCTGGCAGTTCTGTTTTATCCGTTCGCCTG
TCAATTACCAGGTGGCTGGTAGTTGCTGGTCTGCAAGTTCACCGAGTGGC
CTGTCTCTCCCGCCATGTCGTTGCCGCCATGTCGTTGCCGCTGCCTGTTC
CGTCTTGTTGCCACATCGCGTTACCTGCTCGCCCTTTTCGGTTGTTATGG
CCCGCCGCTGCCTGCTAGCTTTGTTTTGTTGCATTCCGCTGCTGTCGGTG
TTCCCGTACGTCCTCTCGCTGCCCCATCCCTTGCCGATGATATGCTCCAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig764:19579..24378-

>mRNA_P-littoralis_Contig764.11.1 ID=mRNA_P-littoralis_Contig764.11.1|Name=mRNA_P-littoralis_Contig764.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig764:19579..24378- (Pylaiella littoralis U1_48)
CCGAGCTTCTTCCTCCATCGCGTACGTGAGCTCCTCGATCTCGGTGACCA
GCCAGTCGACATGTCTTACTACGGACCCCAAGCTTTGTTTTGTTGCATTC
CGCTGCTGTCGGTGTTCCCGTACGTCCTCTCGCTGCCCCATCCCTTGCCG
ATGATATGCTCC
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