mRNA_P-littoralis_Contig1192.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1192.11.1
Unique NamemRNA_P-littoralis_Contig1192.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1192.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1192contigP-littoralis_Contig1192:53301..55798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2498
Hectar predicted targeting categoryother localisation
Exons1
Cds size1560
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789501.9033356-UTR-P-littoralis_Contig1192:53300..540231680789501.9033356-UTR-P-littoralis_Contig1192:53300..54023Pylaiella littoralis U1_48UTRP-littoralis_Contig1192 53301..54023 -
1680789501.9317343-UTR-P-littoralis_Contig1192:55583..557981680789501.9317343-UTR-P-littoralis_Contig1192:55583..55798Pylaiella littoralis U1_48UTRP-littoralis_Contig1192 55584..55798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789501.9224222-CDS-P-littoralis_Contig1192:54023..555831680789501.9224222-CDS-P-littoralis_Contig1192:54023..55583Pylaiella littoralis U1_48CDSP-littoralis_Contig1192 54024..55583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1192.11.1prot_P-littoralis_Contig1192.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1192 54024..55583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1192.11.1

>prot_P-littoralis_Contig1192.11.1 ID=prot_P-littoralis_Contig1192.11.1|Name=mRNA_P-littoralis_Contig1192.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=520bp
MDVDAASPAVVTVNGAAADIRGVSGTAVREEKGTGSPGVAASDHAAGRAA
AAAQGSRDLLSEPPGSNVAAATSGRSASTDKEVPPPERRQANGVATVVRA
LSLPTTPAAVAAAVRTAAAAAAAAPPQGADAAPGGAVEAVGGSESAGQGV
VRPAGVTHVSPDDRGSKRVKVDSSNRISSAAEGAGVYGSSSNNAAAAAVR
AAAVGGGGSAPSPSSARSSADAPTVGGRTAAAALAAAAIATAPAGAAVSN
TASTAANSSDAAETARYSQPAAPSDGRTAVVTIAAAAGQAVMTNAAPAAS
TATVGSASAAEAGNVSQPTRIAERVPAASRVAVTETQELARSTQGVAATT
EAAMDTGRVLQLATVLSNRAPSSNETTVTAAAAAAAAEAGAKPATLETAA
TAVRIPPPSSSSSPPHRSTLAGAPGSSSSSSRSGSSSAPEISQAAGRGGD
GGARRGGGEGGGVEESPPTRSPGPVNTVSGQVQGVQPQRGKRYQIPPVFT
EEDFYSRKERQALLRGRVQ*
back to top

mRNA from alignment at P-littoralis_Contig1192:53301..55798-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1192.11.1 ID=mRNA_P-littoralis_Contig1192.11.1|Name=mRNA_P-littoralis_Contig1192.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2498bp|location=Sequence derived from alignment at P-littoralis_Contig1192:53301..55798- (Pylaiella littoralis U1_48)
CTGCTGCTGCTGCTGCTGCTGGTGTTGCGGCAGCTCACGCAGCTCCGGCG
CCTGCTGCAGCCAGCGCAGCTACAGCACAGGTGGAAGCGACCCCGGCCGA
CGTTCGCAGGGCAGCCCCGTCCGACGGTGGCGTGGCGGCAGCAGCAGGGA
ATACCACTCTTATCGAGGCGCCGCCGCCACCACCACCACGAGAAAACAAG
CCGGACTCGGACCCGATGGACGTGGACGCCGCTAGCCCTGCTGTCGTGAC
CGTGAATGGCGCCGCTGCCGATATTCGTGGAGTTTCCGGTACTGCGGTGC
GAGAGGAGAAAGGCACTGGTAGCCCGGGGGTCGCGGCTTCAGATCATGCT
GCGGGTCGTGCTGCTGCAGCGGCTCAAGGAAGCAGAGATCTGTTATCGGA
GCCGCCAGGAAGTAATGTCGCCGCGGCGACCAGCGGGAGAAGCGCGAGCA
CCGACAAGGAGGTGCCACCACCGGAGCGGCGGCAGGCAAACGGGGTCGCT
ACGGTGGTGAGGGCTTTGTCGCTTCCAACTACTCCAGCTGCTGTTGCGGC
TGCAGTTCGTACAGCCGCCGCTGCTGCTGCTGCTGCTCCTCCGCAAGGTG
CTGATGCTGCTCCGGGTGGCGCGGTTGAAGCCGTCGGCGGCAGTGAGAGT
GCAGGCCAAGGAGTTGTTAGACCAGCTGGTGTGACCCACGTATCGCCCGA
CGACCGAGGCTCCAAAAGAGTTAAAGTAGATTCAAGCAACCGCATAAGTT
CCGCCGCGGAAGGTGCAGGAGTCTACGGTAGTAGCAGCAACAATGCTGCT
GCTGCTGCTGTTCGTGCTGCGGCCGTTGGCGGGGGGGGCAGTGCTCCTTC
GCCTTCTTCCGCTAGAAGCTCTGCTGACGCTCCTACTGTTGGTGGTCGTA
CTGCTGCCGCAGCTCTTGCAGCAGCTGCTATTGCTACTGCTCCTGCCGGT
GCTGCCGTATCTAACACGGCTTCTACTGCTGCAAACAGTTCGGATGCTGC
GGAGACCGCGAGGTATTCGCAACCAGCCGCACCCTCAGATGGGAGGACCG
CTGTGGTAACCATAGCAGCAGCAGCAGGACAGGCGGTGATGACCAATGCG
GCTCCCGCCGCAAGTACGGCAACTGTCGGAAGTGCTAGCGCTGCGGAGGC
CGGGAACGTTTCGCAGCCGACCAGGATAGCAGAAAGAGTGCCAGCTGCGT
CGAGGGTGGCGGTGACGGAAACGCAGGAGTTAGCTCGTAGTACTCAAGGT
GTAGCGGCAACAACAGAAGCGGCAATGGACACTGGGAGAGTCTTGCAACT
CGCGACTGTCCTGTCTAATAGGGCACCTTCGAGCAATGAGACTACTGTCA
CAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGGAGCGAAACCGGCCACG
CTTGAAACAGCTGCTACTGCTGTGCGGATTCCACCACCATCCTCGTCGTC
CTCGCCTCCGCACCGATCTACCTTAGCGGGGGCACCCGGCAGCAGCAGCA
GCAGCAGCAGAAGTGGAAGCAGTAGCGCGCCGGAGATATCCCAGGCGGCT
GGAAGAGGGGGAGACGGTGGGGCGAGAAGAGGCGGAGGGGAAGGTGGAGG
GGTCGAGGAATCGCCGCCGACCCGTTCACCAGGGCCGGTCAATACTGTTT
CGGGCCAAGTGCAAGGAGTGCAGCCTCAGAGGGGGAAGAGGTACCAGATT
CCGCCCGTGTTCACGGAAGAGGATTTTTACTCCAGAAAGGAGAGGCAGGC
CCTTCTACGGGGGCGTGTCCAATGACAAATAATTTGGCGACAGTATCTTG
TCGTGGAAGACCGCCGCATACCATACATGCAGAGTTCGTCTCAAAGTAAG
AAGTCTTCCTTGGGAGGCCTTACCAGGACCCGCAGGAATAACACCTAGAA
CATGTCCCGTATCAAAGTCGAGAAGGACATGTGATATCTCTATTGATGGC
GCGCCGTCTGGTTTAAGCCTACGTGCTGGTCTCCAAGAGTTGATCAGTTC
TCATGTAATACAGAGGTAAGCAAAAAAAATGTGATGCCTCTACTTCTGCT
CTCCTCAGCGCCCTGTATGTGTGTGTTGTCATCCCTTTAATTGGACGCCT
CTACACCTTTCGGGTAGGTCGACGCCCCAACTGGGGTCACACACAGGGAA
GTCAACACAGGAGTTTTTTTTTTTTTTGCCACTTCCCTCTGCAGTGCTTG
CCTTGTTAATGGTTGAGCTTTTATCGCGAGAAAGGGGACAACAATCCCTT
TCCCTCGTCGATGGTACGATCGAATTTTGTTTACTCACGAATTGAACGCT
GTCCACTTTCACGCGCATTGTGAGGAGAAAACCCCGATCGTGTTACTGTG
TGTTGTCATCCCATATTCTCTGGCACACTAGTCTGCAAACTACAGGCTAG
GCCCATCGACGGGGTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACC
CCCACCTTCCTTCTGCGGTACATGCGTGAGATTTTTTCTCGCGAGCAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1192:53301..55798-

>mRNA_P-littoralis_Contig1192.11.1 ID=mRNA_P-littoralis_Contig1192.11.1|Name=mRNA_P-littoralis_Contig1192.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1560bp|location=Sequence derived from alignment at P-littoralis_Contig1192:53301..55798- (Pylaiella littoralis U1_48)
ATGGACGTGGACGCCGCTAGCCCTGCTGTCGTGACCGTGAATGGCGCCGC
TGCCGATATTCGTGGAGTTTCCGGTACTGCGGTGCGAGAGGAGAAAGGCA
CTGGTAGCCCGGGGGTCGCGGCTTCAGATCATGCTGCGGGTCGTGCTGCT
GCAGCGGCTCAAGGAAGCAGAGATCTGTTATCGGAGCCGCCAGGAAGTAA
TGTCGCCGCGGCGACCAGCGGGAGAAGCGCGAGCACCGACAAGGAGGTGC
CACCACCGGAGCGGCGGCAGGCAAACGGGGTCGCTACGGTGGTGAGGGCT
TTGTCGCTTCCAACTACTCCAGCTGCTGTTGCGGCTGCAGTTCGTACAGC
CGCCGCTGCTGCTGCTGCTGCTCCTCCGCAAGGTGCTGATGCTGCTCCGG
GTGGCGCGGTTGAAGCCGTCGGCGGCAGTGAGAGTGCAGGCCAAGGAGTT
GTTAGACCAGCTGGTGTGACCCACGTATCGCCCGACGACCGAGGCTCCAA
AAGAGTTAAAGTAGATTCAAGCAACCGCATAAGTTCCGCCGCGGAAGGTG
CAGGAGTCTACGGTAGTAGCAGCAACAATGCTGCTGCTGCTGCTGTTCGT
GCTGCGGCCGTTGGCGGGGGGGGCAGTGCTCCTTCGCCTTCTTCCGCTAG
AAGCTCTGCTGACGCTCCTACTGTTGGTGGTCGTACTGCTGCCGCAGCTC
TTGCAGCAGCTGCTATTGCTACTGCTCCTGCCGGTGCTGCCGTATCTAAC
ACGGCTTCTACTGCTGCAAACAGTTCGGATGCTGCGGAGACCGCGAGGTA
TTCGCAACCAGCCGCACCCTCAGATGGGAGGACCGCTGTGGTAACCATAG
CAGCAGCAGCAGGACAGGCGGTGATGACCAATGCGGCTCCCGCCGCAAGT
ACGGCAACTGTCGGAAGTGCTAGCGCTGCGGAGGCCGGGAACGTTTCGCA
GCCGACCAGGATAGCAGAAAGAGTGCCAGCTGCGTCGAGGGTGGCGGTGA
CGGAAACGCAGGAGTTAGCTCGTAGTACTCAAGGTGTAGCGGCAACAACA
GAAGCGGCAATGGACACTGGGAGAGTCTTGCAACTCGCGACTGTCCTGTC
TAATAGGGCACCTTCGAGCAATGAGACTACTGTCACAGCAGCAGCAGCAG
CAGCAGCAGCAGAAGCAGGAGCGAAACCGGCCACGCTTGAAACAGCTGCT
ACTGCTGTGCGGATTCCACCACCATCCTCGTCGTCCTCGCCTCCGCACCG
ATCTACCTTAGCGGGGGCACCCGGCAGCAGCAGCAGCAGCAGCAGAAGTG
GAAGCAGTAGCGCGCCGGAGATATCCCAGGCGGCTGGAAGAGGGGGAGAC
GGTGGGGCGAGAAGAGGCGGAGGGGAAGGTGGAGGGGTCGAGGAATCGCC
GCCGACCCGTTCACCAGGGCCGGTCAATACTGTTTCGGGCCAAGTGCAAG
GAGTGCAGCCTCAGAGGGGGAAGAGGTACCAGATTCCGCCCGTGTTCACG
GAAGAGGATTTTTACTCCAGAAAGGAGAGGCAGGCCCTTCTACGGGGGCG
TGTCCAATGA
back to top