mRNA_P-littoralis_Contig76.197.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig76.197.2
Unique NamemRNA_P-littoralis_Contig76.197.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig76.197.2 vs. uniprot
Match: D7FQ99_ECTSI (Trafficking protein particle complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ99_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 7.760e-90
Identity = 135/138 (97.83%), Postives = 135/138 (97.83%), Query Frame = 2
Query:   29 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLHEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIERHSNAGGA 442
            MFLQLFVVNKSGGLIYNQNLSSAAPRL SNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLG VL EIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIERHSNAGGA
Sbjct:    1 MFLQLFVVNKSGGLIYNQNLSSAAPRLNSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGGVLQEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIERHSNAGGA 138          
BLAST of mRNA_P-littoralis_Contig76.197.2 vs. uniprot
Match: A0A835ZDL6_9STRA (Trafficking protein particle complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL6_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.090e-65
Identity = 102/135 (75.56%), Postives = 119/135 (88.15%), Query Frame = 2
Query:   29 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLHEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIERHSNA 433
            MFLQLF++NKSG LI++Q+LS AAPRL+SND LRLGSTFHSLHAIAAQVAP+ SSGIEKLET T++L+  QTLTG KFVITA+  TP+L  VL  IYELYTDYVLKNPFYELEMPIRCELFT +LE+L+ER++ A
Sbjct:    1 MFLQLFIINKSGSLIFHQDLSPAAPRLSSNDSLRLGSTFHSLHAIAAQVAPIASSGIEKLETATYRLRCLQTLTGAKFVITAQPNTPELEVVLQGIYELYTDYVLKNPFYELEMPIRCELFTQHLEKLVERYNAA 135          
BLAST of mRNA_P-littoralis_Contig76.197.2 vs. uniprot
Match: K8Z5G7_NANGC (Trafficking protein particle complex subunit (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z5G7_NANGC)

HSP 1 Score: 200 bits (508), Expect = 7.600e-63
Identity = 98/133 (73.68%), Postives = 114/133 (85.71%), Query Frame = 2
Query:   29 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLHEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIERHS 427
            MFL LFV+++SGGLIYN++LSS+APRLT N+WL LGSTFH LH+IAAQVAP+ SSGIEKLE D  KLQ FQ+ TGVKFV+TAE GTPDL  VLH IYELY DYVLKNPFYE++MPIRC+LF   +E LIER+S
Sbjct:    4 MFLHLFVISRSGGLIYNKDLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNS 136          
BLAST of mRNA_P-littoralis_Contig76.197.2 vs. uniprot
Match: A0A7S2RJT7_9STRA (Trafficking protein particle complex subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJT7_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.870e-61
Identity = 94/137 (68.61%), Postives = 112/137 (81.75%), Query Frame = 2
Query:   29 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLHEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIERHSNAGG 439
            MFL LF++++SGGLI+NQ+LS  APRL +NDWLRLGSTFH  HAIA+Q+APV SSGIEKLETD+F L+ FQ  TG+KFVITAEAGT DL  VL  +Y+ YTDYVLKNPFYELEMPIRCELFT  +  +I+ H +  G
Sbjct:    1 MFLHLFIISRSGGLIFNQDLSELAPRLNANDWLRLGSTFHGFHAIASQIAPVVSSGIEKLETDSFVLRCFQPPTGIKFVITAEAGTQDLEVVLQRVYQAYTDYVLKNPFYELEMPIRCELFTEAIARVIQSHGSQTG 137          
BLAST of mRNA_P-littoralis_Contig76.197.2 vs. uniprot
Match: K3WRL1_GLOUD (Trafficking protein particle complex subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRL1_GLOUD)

HSP 1 Score: 183 bits (464), Expect = 3.810e-56
Identity = 88/131 (67.18%), Postives = 105/131 (80.15%), Query Frame = 2
Query:   29 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLHEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIER 421
            M   L+++NKSGGL+Y Q+LSSAAP+L+SND LRLGSTFHS+HAIA   +PV S GIE LETDTF+LQ FQT TG+KF +TA  GTPDL AVL  +YELY DYVLKNPFYELEMPIRC LF   L+  +++
Sbjct:    1 MLHSLYIINKSGGLVYQQDLSSAAPKLSSNDHLRLGSTFHSMHAIAVLASPVASGGIETLETDTFRLQCFQTPTGLKFFLTAALGTPDLDAVLRTVYELYVDYVLKNPFYELEMPIRCSLFNSGLKTFVDK 131          
BLAST of mRNA_P-littoralis_Contig76.197.2 vs. uniprot
Match: A0A2D4CAE8_PYTIN (Trafficking protein particle complex subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CAE8_PYTIN)

HSP 1 Score: 182 bits (462), Expect = 7.660e-56
Identity = 90/131 (68.70%), Postives = 102/131 (77.86%), Query Frame = 2
Query:   29 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLHEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIER 421
            M   L+++NKSGGLIY  +LSSAAPRL+SND LRLGSTFHS+HAIA   APV S GIE LETDTF+LQ FQT TG+KF ITA  GTPDL   L  IYELY DYVLKNPFYELEMPIRC LF   L+  +++
Sbjct:    1 MLHSLYIINKSGGLIYQLDLSSAAPRLSSNDHLRLGSTFHSMHAIAVLAAPVASGGIESLETDTFRLQCFQTPTGIKFFITAALGTPDLDHALRTIYELYVDYVLKNPFYELEMPIRCSLFNAGLKSFVDK 131          
BLAST of mRNA_P-littoralis_Contig76.197.2 vs. uniprot
Match: F0WDB3_9STRA (Trafficking protein particle complex subunit n=3 Tax=Albugo TaxID=65356 RepID=F0WDB3_9STRA)

HSP 1 Score: 181 bits (458), Expect = 2.910e-55
Identity = 89/134 (66.42%), Postives = 105/134 (78.36%), Query Frame = 2
Query:   29 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLHEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIERHSN 430
            M   L+++NKSGGLIY Q+LS AAP+L+SND LRLGSTFHS+HAIAA  APV S GI  LETDTF+LQ FQTLTG+KF ITA+ GT D+   L  IYELY DYVLKNPFYELEMPIRC LF   L+  +++ +N
Sbjct:    1 MLHALYIINKSGGLIYQQDLSPAAPKLSSNDHLRLGSTFHSMHAIAALAAPVASGGINSLETDTFRLQCFQTLTGIKFFITAQLGTLDIDNALKTIYELYVDYVLKNPFYELEMPIRCTLFNAGLKLFVDKFNN 134          
BLAST of mRNA_P-littoralis_Contig76.197.2 vs. uniprot
Match: A0A6G0XR37_9STRA (Trafficking protein particle complex subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XR37_9STRA)

HSP 1 Score: 172 bits (435), Expect = 7.950e-52
Identity = 88/133 (66.17%), Postives = 105/133 (78.95%), Query Frame = 2
Query:   29 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITA--EAGTPDLGAVLHEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIER 421
            M L L+V+NK+GGLIY Q+LSS AP+L+SND+LRLGSTFHS+HAIAA  APV S GI  +ETD+F+LQ FQ +TG KF ITA     + +L AVL +IYELY DYVLKNPFYELEMPIRC LF   L+ L+ER
Sbjct:    1 MLLSLYVINKAGGLIYQQDLSSEAPKLSSNDYLRLGSTFHSMHAIAALAAPVLSKGILSMETDSFRLQCFQAMTGTKFFITALPVLSSAELDAVLLQIYELYADYVLKNPFYELEMPIRCHLFHSNLQLLVER 133          
BLAST of mRNA_P-littoralis_Contig76.197.2 vs. uniprot
Match: A0A7S4A735_9STRA (Trafficking protein particle complex subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A735_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.060e-51
Identity = 83/136 (61.03%), Postives = 103/136 (75.74%), Query Frame = 2
Query:   29 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLHEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIERHSNAG 436
            M+LQL ++NKSGGL+YNQ+LS  A +L SNDWLR+GSTFHSLH IA  + P  SSGI  LET +F L+  +T+TG+KFV+TAE GT  L  VL  +YELY+DYVLKNPF++LEMPIRC LFT ++ EL E     G
Sbjct:    1 MYLQLMIINKSGGLVYNQDLSPQAAQLDSNDWLRIGSTFHSLHEIARSIPPGRSSGIVALETSSFALRCLETITGIKFVLTAERGTQVLEPVLRMVYELYSDYVLKNPFHDLEMPIRCRLFTEHVTELFESFHTTG 136          
BLAST of mRNA_P-littoralis_Contig76.197.2 vs. uniprot
Match: A0A397BNG8_9STRA (Trafficking protein particle complex subunit n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BNG8_9STRA)

HSP 1 Score: 171 bits (433), Expect = 2.200e-51
Identity = 85/133 (63.91%), Postives = 105/133 (78.95%), Query Frame = 2
Query:   29 MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITA--EAGTPDLGAVLHEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIER 421
            M L LFV+NK+GG++Y Q+LS+ AP+++SND LRLGSTFHS+HAIAA  APV S GI  ++TD+F+LQ FQTLTG KF ITA     + DL AVL +IYELY DYVLKNPFYELEMPIRC LF   L+ L+++
Sbjct:    9 MLLSLFVINKAGGVVYQQDLSAEAPKISSNDRLRLGSTFHSIHAIAALAAPVASKGIVSMDTDSFRLQCFQTLTGTKFFITALPNISSGDLEAVLRQIYELYADYVLKNPFYELEMPIRCHLFYTNLQLLVDK 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.197.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ99_ECTSI7.760e-9097.83Trafficking protein particle complex subunit n=2 T... [more]
A0A835ZDL6_9STRA2.090e-6575.56Trafficking protein particle complex subunit n=1 T... [more]
K8Z5G7_NANGC7.600e-6373.68Trafficking protein particle complex subunit (Frag... [more]
A0A7S2RJT7_9STRA2.870e-6168.61Trafficking protein particle complex subunit n=1 T... [more]
K3WRL1_GLOUD3.810e-5667.18Trafficking protein particle complex subunit n=1 T... [more]
A0A2D4CAE8_PYTIN7.660e-5668.70Trafficking protein particle complex subunit n=2 T... [more]
F0WDB3_9STRA2.910e-5566.42Trafficking protein particle complex subunit n=3 T... [more]
A0A6G0XR37_9STRA7.950e-5266.17Trafficking protein particle complex subunit n=1 T... [more]
A0A7S4A735_9STRA1.060e-5161.03Trafficking protein particle complex subunit n=1 T... [more]
A0A397BNG8_9STRA2.200e-5163.91Trafficking protein particle complex subunit n=6 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig76contigP-littoralis_Contig76:620908..622946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQ99
Preferred nameTRAPPC4
PFAMsSybindin
Model size576
Max annot lvl2759|Eukaryota
KEGG koko:K20303
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005793,GO:0005794,GO:0005795,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007275,GO:0007399,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016358,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022008,GO:0022607,GO:0030008,GO:0030030,GO:0030133,GO:0030154,GO:0030182,GO:0030425,GO:0031175,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032800,GO:0032991,GO:0033036,GO:0034613,GO:0036477,GO:0042886,GO:0042995,GO:0043005,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045184,GO:0045202,GO:0045212,GO:0045213,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048468,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051020,GO:0051179,GO:0051234,GO:0051276,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0065003,GO:0065007,GO:0065009,GO:0070382,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0090114,GO:0097447,GO:0097458,GO:0097708,GO:0098772,GO:0098791,GO:0098793,GO:0099023,GO:0099503,GO:0120025,GO:0120036,GO:0120038,GO:1901576,GO:1990070,GO:1990071,GO:1990072
Exons4
Evalue2.28e-91
EggNOG OGsCOG5122@1|root,KOG3369@2759|Eukaryota
Ec32 ortholog descriptionSybindin-like protein
Ec32 orthologEc-01_006940.1
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size444
COG categoryU
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig76.197.2prot_P-littoralis_Contig76.197.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig76 620936..622842 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791572.2132983-UTR-P-littoralis_Contig76:620907..6209351680791572.2132983-UTR-P-littoralis_Contig76:620907..620935Pylaiella littoralis U1_48UTRP-littoralis_Contig76 620908..620935 +
1680791572.2655935-UTR-P-littoralis_Contig76:622842..6229461680791572.2655935-UTR-P-littoralis_Contig76:622842..622946Pylaiella littoralis U1_48UTRP-littoralis_Contig76 622843..622946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791572.2245343-CDS-P-littoralis_Contig76:620935..6209891680791572.2245343-CDS-P-littoralis_Contig76:620935..620989Pylaiella littoralis U1_48CDSP-littoralis_Contig76 620936..620989 +
1680791572.23346-CDS-P-littoralis_Contig76:621332..6214221680791572.23346-CDS-P-littoralis_Contig76:621332..621422Pylaiella littoralis U1_48CDSP-littoralis_Contig76 621333..621422 +
1680791572.2422118-CDS-P-littoralis_Contig76:622291..6224651680791572.2422118-CDS-P-littoralis_Contig76:622291..622465Pylaiella littoralis U1_48CDSP-littoralis_Contig76 622292..622465 +
1680791572.2529535-CDS-P-littoralis_Contig76:622716..6228421680791572.2529535-CDS-P-littoralis_Contig76:622716..622842Pylaiella littoralis U1_48CDSP-littoralis_Contig76 622717..622842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig76.197.2

>prot_P-littoralis_Contig76.197.2 ID=prot_P-littoralis_Contig76.197.2|Name=mRNA_P-littoralis_Contig76.197.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=148bp
MFLQLFVVNKSGGLIYNQNLSSAAPRLTSNDWLRLGSTFHSLHAIAAQVA
PVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGAVLHEIYELY
TDYVLKNPFYELEMPIRCELFTLYLEELIERHSNAGGAAGNGAGGKF*
back to top

mRNA from alignment at P-littoralis_Contig76:620908..622946+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig76.197.2 ID=mRNA_P-littoralis_Contig76.197.2|Name=mRNA_P-littoralis_Contig76.197.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2039bp|location=Sequence derived from alignment at P-littoralis_Contig76:620908..622946+ (Pylaiella littoralis U1_48)
TTGCTGATGCTCAGCCCTCCTTGTGTCGATGTTTCTCCAGCTATTCGTCG TCAACAAATCCGGAGGGTTGATTTACAATCAGGTGGGCTGAAAAAGACAC AGTGAATTTCTCAACGAGCCAATATTGGTCCAATCAATGTCGCGCACCTT TTTTCGGAGATCTGATCTACTTAGTACAACCTTGTACATAAAAAGCATCG TTTTCACCTTGTTCCGGGAGCAAACTCCGCAGACATGACCCACATTCCCT CTCCAAGGGACGGAACTCTCCGCTGCTGCAAATCAGCGGGACGAAGCACC GCTGTTGTTTATACAGGGCTGTAGGGCCGTTGAAAACCTTTGCTTTCGTC TTCAATGAATGTGGGTCTTTGCCTGCTGTCTGTAACTTCCTCTCTGTACA TACTTGCTTTGCACCCATCGCACAGAACCTCTCGTCCGCCGCACCGCGGC TGACCAGCAACGACTGGCTTCGACTAGGTTCGACGTTCCACAGCTTGCAC GCCATCGCCGCTCAGGTACGAAGCTTCTGTAGGCCACCCGGCACACAGCA GTCACACAAGTTGTACCCTATGCACGCACAGCAGACCAGTAGGTCTACAG CAAGTTTGCTGAAGAGTACCGTATTCGGGGTGATTTTCACGGTCCCAAAC AGCAGAAACCGTGCTGTATCTTACAATCCACGATGAGGAATCGTCTGTCA TCAAAAAGCCCCTAGCCGAAGAAGCTCACCATTGCAGTCGTGCCGGTTCT TTTGCAAGAAAGCAACGGAGTGTCCCTGTCAAGCGAAAGTCGGGCTGAAA TTAAATCCGAAAACAGCGTAAAAAATATCCGCAGTTTTCGTCACAAACGG GGTGTGCCACTCTCACAGCCCCGAACACCAGGCAATGAGAGTTGAACTTT GGCCTCACGTGAGATTGTCAAGGCACAAGGAAGTTGGTTTTTTCAAGCAC TCATTCGTATTTTGCTGTATCTTGCAGGGCTTCGTGATAACAGGCACGGA AGTCTCTCCCCTTTTTGAGACACACTGTGTGGTCGTCCCACAAGAGGAAA ATGCTTCTTCTCAAGGTAGCTATCGTAGATACAATCATACCGTCTCCCAA TAAGTTCTCCCTCTGATGCCACCCAAGCAAGTCCTCGAAATAAATCATCC CCGTCTTTTGCCCCATCTGAAGGAAGAAGCGGGGAAGGGGGATGCACTGC TTGCTGTTTATTGGTTGTGCTTGTTTGGTGGCATGCGCTCAGAATACATG CCTGGTATTCCGCATGCTATAAATACAAAATCCCTCTGTAGTATCCAGGT CATGACTACAACAGTATGCTTTTGCTTGCCCGCGACCAAAACAAAACTCT TCGTATTGAACGACGCCACACCATGACGGTATAGGTTGCGCCGGTACCAT CCTCTGGAATAGAAAAGCTCGAGACGGACACGTTCAAGCTGCAGAGCTTC CAGACGCTGACGGGGGTGAAGTTCGTCATCACCGCGGAAGCCGGCACGCC CGACCTCGGGGCCGTACTCCACGAGATCTACGAGCTCTACACCGACTACG TTCTCAAGGTAAAAATCATGAACCGCAGCACTGCTTGCTGCTGCTTCTGC TGCTGCTTGCTGCTGCTTCTGCTGCTTCTGCTACCGCTAATGTAGTAGCA GCCATGCCCCCCCCACCCCGTGCTTACTGATTTTGCCTGACCAGTCGCTG TGATATGCTGTGCCACATCGTGCTTTGCTCTCCCTGTGTGTGTCGTGGGT GGGCCTGTCTGCCTGTGGGCGTGTGTGCGCGCGTTTGACGCGACTACCGA ACTGCGCAGAATCCTTTTTACGAGCTGGAGATGCCGATCCGATGCGAGCT GTTCACTCTTTACCTCGAGGAGCTCATCGAGCGGCATAGCAACGCTGGGG GGGCAGCGGGCAACGGGGCCGGGGGGAAATTTTAATGATGCAGTTGTAAC TACGGGATGGCATCATGTGTGCTAGTGATTAATATTGTTGGTGTCGTTTT TGGTGGTACAGATTATATTGTGCGTATTTGTGTGGCTTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig76:620908..622946+

>mRNA_P-littoralis_Contig76.197.2 ID=mRNA_P-littoralis_Contig76.197.2|Name=mRNA_P-littoralis_Contig76.197.2|organism=Pylaiella littoralis U1_48|type=CDS|length=444bp|location=Sequence derived from alignment at P-littoralis_Contig76:620908..622946+ (Pylaiella littoralis U1_48)
ATGTTTCTCCAGCTATTCGTCGTCAACAAATCCGGAGGGTTGATTTACAA
TCAGAACCTCTCGTCCGCCGCACCGCGGCTGACCAGCAACGACTGGCTTC
GACTAGGTTCGACGTTCCACAGCTTGCACGCCATCGCCGCTCAGGTTGCG
CCGGTACCATCCTCTGGAATAGAAAAGCTCGAGACGGACACGTTCAAGCT
GCAGAGCTTCCAGACGCTGACGGGGGTGAAGTTCGTCATCACCGCGGAAG
CCGGCACGCCCGACCTCGGGGCCGTACTCCACGAGATCTACGAGCTCTAC
ACCGACTACGTTCTCAAGAATCCTTTTTACGAGCTGGAGATGCCGATCCG
ATGCGAGCTGTTCACTCTTTACCTCGAGGAGCTCATCGAGCGGCATAGCA
ACGCTGGGGGGGCAGCGGGCAACGGGGCCGGGGGGAAATTTTAA
back to top