mRNA_P-littoralis_Contig76.90.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig76.90.1
Unique NamemRNA_P-littoralis_Contig76.90.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig76.90.1 vs. uniprot
Match: D7FQJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ1_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 3.570e-54
Identity = 91/108 (84.26%), Postives = 100/108 (92.59%), Query Frame = 1 
Query:  682 MPDLTSRMHEAKSSPEANRQLMLRIRRSNVQLGDGRIKTLTTTQHDSMDEVVEATSKMEPGFNARTKQDPRYSSIKLGNPDMESQWSTSNKMPNWYAPETYTRQATPN 1005
            MPDL SRM EA SSPEANR+LMLRIRRSNVQLGDGRIKTLTT+QHDSMDE+VEATSKMEPGFNARTKQDPR+SSI+LG+P  E+ W+TSN+MPNWYAPETY RQ TPN
Sbjct:    1 MPDLRSRMREANSSPEANRELMLRIRRSNVQLGDGRIKTLTTSQHDSMDEIVEATSKMEPGFNARTKQDPRFSSIELGDPAAENLWTTSNRMPNWYAPETYARQTTPN 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQJ1_ECTSI3.570e-5484.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig76contigP-littoralis_Contig76:208225..214570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1688
Hectar predicted targeting categoryother localisation
Exons6
Cds size927
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig76.90.1prot_P-littoralis_Contig76.90.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig76 208309..213893 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791567.0092304-UTR-P-littoralis_Contig76:208224..2083081680791567.0092304-UTR-P-littoralis_Contig76:208224..208308Pylaiella littoralis U1_48UTRP-littoralis_Contig76 208225..208308 +
1680791567.0872657-UTR-P-littoralis_Contig76:213893..2145701680791567.0872657-UTR-P-littoralis_Contig76:213893..214570Pylaiella littoralis U1_48UTRP-littoralis_Contig76 213894..214570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791567.0217247-CDS-P-littoralis_Contig76:208308..2085581680791567.0217247-CDS-P-littoralis_Contig76:208308..208558Pylaiella littoralis U1_48CDSP-littoralis_Contig76 208309..208558 +
1680791567.0319712-CDS-P-littoralis_Contig76:209090..2092321680791567.0319712-CDS-P-littoralis_Contig76:209090..209232Pylaiella littoralis U1_48CDSP-littoralis_Contig76 209091..209232 +
1680791567.0416632-CDS-P-littoralis_Contig76:210335..2104721680791567.0416632-CDS-P-littoralis_Contig76:210335..210472Pylaiella littoralis U1_48CDSP-littoralis_Contig76 210336..210472 +
1680791567.0515351-CDS-P-littoralis_Contig76:211012..2111941680791567.0515351-CDS-P-littoralis_Contig76:211012..211194Pylaiella littoralis U1_48CDSP-littoralis_Contig76 211013..211194 +
1680791567.06519-CDS-P-littoralis_Contig76:213167..2133081680791567.06519-CDS-P-littoralis_Contig76:213167..213308Pylaiella littoralis U1_48CDSP-littoralis_Contig76 213168..213308 +
1680791567.0774677-CDS-P-littoralis_Contig76:213818..2138931680791567.0774677-CDS-P-littoralis_Contig76:213818..213893Pylaiella littoralis U1_48CDSP-littoralis_Contig76 213819..213893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig76.90.1

>prot_P-littoralis_Contig76.90.1 ID=prot_P-littoralis_Contig76.90.1|Name=mRNA_P-littoralis_Contig76.90.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=309bp
MHTIYNDNNGSRRARRRLEPPLPPSVVAASNNEMKTRLSTSSLILGNVGP
ETRDWSLSSTQLRPTGAGALDPAQRAKNVIMKQALQTAQIVLGEDRAEWG
ASNTMPAPTGDVSRYRGRLTAETANFIKTSSLKMGSSNPGSQYTTSMSRE
GLKTPDHNASVELFNSNRSLHDKLREAGRTTRIIDPDGDKGARYERSNIM
PDLTSRMHEAKSSPEANRQLMLRIRRSNVQLGDGRIKTLTTTQHDSMDEV
VEATSKMEPGFNARTKQDPRYSSIKLGNPDMESQWSTSNKMPNWYAPETY
TRQATPNL*
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mRNA from alignment at P-littoralis_Contig76:208225..214570+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig76.90.1 ID=mRNA_P-littoralis_Contig76.90.1|Name=mRNA_P-littoralis_Contig76.90.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6346bp|location=Sequence derived from alignment at P-littoralis_Contig76:208225..214570+ (Pylaiella littoralis U1_48)
TCGCTTTAGTTCTGTCGGCCCTCAGAAGAAGAAACTTGTTGCTCCTGCTG
GTAGTTCGAAGTAAAATTTTCGCAGAAACGAACGATGCACACCATCTATA
ATGACAACAACGGGAGCAGAAGGGCGAGGCGGCGACTAGAGCCACCACTG
CCGCCGAGCGTGGTTGCGGCAAGCAACAACGAGATGAAAACAAGGCTGTC
CACGTCCTCCCTGATCCTCGGCAATGTCGGTCCCGAGACGAGGGACTGGA
GCCTCTCCAGCACGCAGCTACGGCCCACAGGTGCCGGAGCCCTTGATCCG
GCCCAGCGAGCGAAAAATGTCATCATGAAACAAGGTAAATGCGCCTTGAA
GAGGCTTGTTGCAGTTCAAGCACAATCAATCAGTTGGCGGCCGTGTAACT
CTGCAGGACAAGTATTTTGTCGATTTTTTTTACAGGTAGTTTGCATGTAG
TGGGTAGATGTGTTTCGCGGCGAGCAGCGTATCATATCATACGATTACCA
TCAGGTGCAGCAAAGTTCTCTGTCATGTTGGTTCATCCGTTTGCCGAAGC
AAGGGATTGCTGTGGAGAGAGGTGCAGATGCAAGTCGAGCTATTATTATG
CATACATGAATGTGCGAGCCAGCGGTGGTCTGCTTCTGTGGCGATGGTCA
CATTTTCCTATTTCAGTGCAGGGCGCAGTGGGCATCGAGAGCAGTGTGTG
TGCTCACACCCCGAAAATACACACAAATCGGTAGTGTACAACGCTGTGTG
GTATCTGAATATACGTAATATCGGAGTGTTTGGCAAGCTGGCACAATGTA
CATTTTACTTCACATCAGAAGTTCGGAAATCTGAATCTGTCTGGTAATAC
CCTTTCTGCTGAAAAGCATTACAGACGGCTCAAATAGTGTTGGGAGAAGA
CCGGGCCGAGTGGGGAGCGTCCAATACCATGCCGGCGCCGACGGGTGATG
TATCTCGCTACCGGGGACGGCTTACAGCAGAGACCGCCAATTTCATCAAG
ACCTCAAGGTGCAGAGTCTACCCCAAGACTCCATACATGCAACAGCAGTA
TCGTAAACACGCACCTCTGCACTGCCTGCTGGGTACGTGCTGCATGGCAT
CTCGTTCACTGACCAGCCACAACGTCCAATGACCCTTCGCACTGGTCATC
TTCTTAAGAGCATTCCGTCAACTGTTATTGTACTCGGAGTATGACATAAG
GTTCCAGCCCCCATTATTCTACTGGCTTCTCTTCTGACACCAGCGGGAAA
GGGAGGGGTGCTGTGAGCGCTTCACTTCCGCCGTCCCACACGTCGGACGG
TTTTGAGAAGCGTTTCCAGCAGCCGTTTCTGGCGGCGCAGTACGCGCAGA
CGGCGGCAGGGGTGTCCCTGTCGCTTCGGGAGCAGCAACAGCAGTCGTGC
GGCGGAAGCAACCGGCCAAAGGTTCACCGTCGTCGGTGGGGAAAAACCAG
CAACTCTCGCCTGTGTTGGCGGTTCCAGGTTGACGAAGGAGAGCTTCTAC
GGCAGTACCAAGTGCGTCAAGTGCGTCGCCTGTGTTCTCACCCGCATTCT
CGCTCAACGCGGTGACGGTATAACAGAAGCTACGCCGACGGTGATGAGGT
TGAGGAGCTGCCGCAGACAGCATTCGCAGAGCAGCAGCGACAGCCGCTTG
CACCAACAGCGATACCGGTGGTAGCACGGTTGGCAATCAGCAGTGATCGG
TCGACAACCGGGGGGGGGTTGCGGTGAAAGACGCGCGACAGGGTAGCAGT
GTGTAGCCCGCTGCTCAGCAGGCGCTGCCCCCACCTGCCAACGGACAGGT
TTGGCTTGCGAGTCAGAGACGCTGCCGACTTGCACTGCCATTTGCGGACG
ACAGCGGTGGACATCGAGATGACCGGCCTCCACACGGGTCGCGGACATTC
GCGCAGGAATGCTGCTTGTGGTACTCGACTGTCGATGCCGATCGACAGAG
TCTGTAGTCGGACAATGATTCGACGTGTCCCATATTTGCGACGTCGTTTG
TGTGATTAACGGAGCGCACACAACCCACTTGGGGACTTACAACAATCTCC
CCCCATCCCGCCCTCACCGGCGCGCGCGCCCTGCATTTTATCCCTCCACG
TCTCCCACAAGCTTGAAAATGGGATCATCAAACCCGGGTTCCCAATACAC
GACGTCGATGTCGAGAGAGGGCTTGAAAACGCCGGACCACAACGCTTCAG
TCGAGCTCTTCAACAGCAATCGATCGCTTCACGACAAACTCAGAGAAGGT
GAAATGCACGCAGCCAAACACAAGGCAAATTTTTAATAGGTCCCGACTGG
CGGAAAATTCCGCGTCACGCAACACAGCTACCGTGTCGCCAATCTCATCG
GACGCAACTGACTGATTCATGACAAATCGAAGGAACGGTGAAAAAAGCCT
GGAAGAACGCAAAACAAATACAGGGAAAAATATGAATTAGAGTTCCAGGT
ATCAGAAGATATACTAGCGCCGAGATAGGCACGCGAGTGACCAATGCGCA
CCTATCGCGTGCGCAGCATGCTTAAATGCTTCTCCCTTTGCTGACACTGT
AGCGGCTTCACAGCGAATGGAACGTGGTACTTGTATGCCATCCGACAACT
TGCATCGCGGGAATATATGTTTTGCTCAACAGGTTCTCCGCAGCGATAGC
CAAGGTTTAATTACACAGTTTTGACTGACGGAGTGGCACACTATTCTACC
TTTTCGCACCTCCCTACCAAGTTATGACTGTTGCTGCGTGCGGTATATTT
TATCCACCCCTTCCCTGCCCCCATTACCCATCTTTCAGCGGGACGAACAA
CGCGAATAATCGACCCCGACGGGGATAAGGGGGCACGCTATGAGAGAAGC
AACATCATGCCGGACCTCACGAGCCGTATGCACGAAGCCAAGTCGTCGCC
GGAGGCAAATCGACAGCTGATGCTGCGAATCCGGCGATCCAACGTTCAAC
TCGGCGACGGCCGGATCAAGGTATGTACGGCACGCCTTCATTGTCGCCTT
TTGCACCTTGCCTGCGCCATTCAAAAACGTCTTACTTTTTGCGGGGGGTA
TTACCGCATATTTCACCTCACACTTTGCGAGATGGGTATAAACTTTGTTT
CTTTTACAAGATAGGTATAAAAATTGTTTGTTTAACACACAACCGCTGTG
TTTCTGTTGTTTGAGCTTGAATACATTAATTTCTCGCCTTTTTCACCTCA
TCGGGTGGCATACAAAGCACGTAACCTCTACGAGTATGTAGGCGAACAAT
GTGAAAACCTTATGGTTTTCGTAGAACGTCTATCCCTTATCATGGGATGA
CGCATAAATGGTGGTGGTCTCCTACCCTGCAGGGCGGAGGTGGTTTCATC
GTCCCATTTCGGCGTGCTTAAGATACTCCTCGGTACCCTCCTCTGGTGGT
GTGTTTCATCCTTCTTGTCGTGTTTTTTGGTACCGTAGTCTATTCAGCCG
CCTACACACTCTCGGTTCGATATTTTTTCCGCGCGAGTTGAGCTTTTATT
TTTTGTGCAGCTCCTCGTGAAGTTGGAGTTCCAACAAGTGTTTGCGTGTA
TCTAGAACACGAGAAGAGGTGCCGCACTGCTGCAGGGTGCAGCGCGCGTT
TGTGTCGATCGGACCCACAGACAGGACATCAAAGAAGCTCGATGAACGTC
TCGTAACTGTTTTGTTGGCGGGGGGATTTCTTCTTGGATACATTGCTGCA
TTCGAGAATCGTCGATGGTGCATGGGGTGCGGCTCCATTCATTTCCTATT
TCCCCGGCCGCGTTCGGGCGCAAGGAAGGCCGGATGGGTTTGCAGTGAAA
AGTGGTTCGTTTCACGTCGTTTCGTTACGTTGGTTGAATAATCATGTACC
CAGGTCCAGATTTTCTGTGTTTCTCCGGCGTTGATGTCGTGCATACTTCG
TCTGACCCGTCTTGTAGATTGCTTTCCATTCGCTCGCAGCATAATTTTAC
GATAAACTTACACCCCTTGTAAAACGCTGTAATAGATACAGTAGCCACTA
CGAAGAATAAAGGAACCTGCAATGACAGGTCATAATATTTAGCCCCCGCG
ATCTCTGTCCCAAGCTGTGTATCGCTTTTGGGGCATTCAATATCCGTGAG
TACCTTACGAATGTATGTACAAAAATTGCACACGTATGAAAGGACAGATC
AGATCCCTTAGATCGGATCTAGATCTCGATCGATCGCAGATCATATTGAT
CTGTGCAGCACAGATGATCTGTGCGTTCAATGTTCTTTAAATAATTGATC
TGCCATTGATTTGCCATTGATCCGTCGCACAGGTAAATCATGATCTATGC
GGCTGTGATCTATGCGCACAGGTGATCTGTGCGTATTTTCAAACCGTGAT
ATGTGCGCACAGATCACTCGTGCAAAAGCCCGACCGGTGATTTGCGCGCA
CAGCCCGTCTGTACATATTTTCAAGCCGTGATGTGTTGTAAACGCCGGTG
AATTCTTCAAGGGCGTGACATGTTCCCATCCGTGCTCCGCCACAGATGAT
TAGTCTTGGAAGCTTCGGAACCAGACGTTCACTTCTTGGCCAGATTACCG
TCAGTCCATGTTTGCGATAACGGTCGGAAGCGTCAGCAATTTCGAAAGCT
ACGCAGTGTTGACGTTGCAACATTTGCTCCGAAATTGGTGATGGCCACGG
CGGCGGCGTTGGTGGCGTCACGGCGGTTCTCCGTCGCTAGAGCGGCGTTT
TGGCGTCATTCCCGCTGGTGAATGAGAGCGACGGTCCTTGAAATACGGTG
CTATGATACCACGGTCCGTGCGCTCTTGCCTCAAGTTAGGATGATCCAAC
GTCCCCGGGAGGGGGGCGGGTGAGTGGGGTTACGCGATTGCTTGCACGCG
TGTATATATTTGCACCCGCCGGTTAACAACTTTTGCCCTGCCCGGCTGCT
GTGCCGTTTTGCAATGCACCGTCGCCTGCGTGCGTGCGTCCAGACGTTGA
CGACGACGCAGCACGACTCTATGGACGAAGTGGTCGAGGCGACCAGCAAA
ATGGAGCCGGGCTTTAACGCGAGGACCAAGCAGGACCCTCGGTACTCGAG
CATCAAGCTGGGAAACCCGGACATGGAAAGCCAGGTACATGGTGCATCAC
ACTCCAAGCAAGGTGCTTTTTGCTCTTCATTCGACATGGAGGACACGCCT
AGCAGACAGATCGATCATCACTCACAGAACAATAATCGCGTACACACAGC
GTACTCACTTTTTCTTCAATGTGAGACTGACCATTTTGAGGCGACACTAA
GGAAGATGAGTTAATATGTGAGTTCACTGGTGATACAAATGGCACATCGG
GTTGTGAGGGCTGTGAGAAAAAACTCGCGTTGTCGATAACGTGTTTGCTC
GCTCGCTGCGAGTTTTGAGTCTTCGTTCTTGACGTCTTGCGGTCAGCGAC
GTCCGACAGAAAAAACAGGATGCTGTCTATGCCTGATAAAACCCCCGTGT
GTCTAGAAAACGAATGTAATCTGTTGATTGCGTTGCTTTGCTTTCTCCTC
TAGATGCTCGCCTCTTACACCTCTTAAGAAACGACCGACGACCCCGTTTT
GTCGGGGTTTGTTTTTGTGCTCGCTTGTCACGCTCTCCGCGCAGTGGTCC
ACGTCAAACAAAATGCCGAACTGGTACGCGCCGGAAACCTACACGAGACA
AGCCACCCCGAACTTGTAAAAGTTAAAGTTGGTGTCGATCGCTTCTTGCT
CGGGCAAGTTGGAAGGGCGGGTGGACGCCAATTCTGCAGGCCAAGCTGTT
CCTGGGCTACAGGAAACGCCGGGCACAACGCCACGACGTACTACGCACGA
GGTCTCACAGCAACTTTTCCCTGAGATTATCTCTTCAGACCTATGATGTG
GCCTCGTCAAATTGTTTTTTTCTGCAGGAACTCACCGCGATAATGATTAT
CAATTGTCAGGGGGTCAAAGGCGACAACCTATCTCCAAGAGCAGCGTTTG
TTTTTTCAAAGCGGTGAGCGGATCTCTGCCTAGATTAAGTGATACTTCTG
CTACTGTACTGTAAAAGGTTTATACTTTGATGTACCGGAATGGTGTCTCA
AAATAAAGATTGTCTGATCGTTTAAGGGCGTGAGCCACGTGTTTGCCTAC
TTCGTACGAGGTACATACTTTTCGTACCCTAGATTTTCCTGTGACGACAA
GATGTCGGTGGCATTCGCCTCCGTGCTGTGGAATTGAGTGAATCATGTGG
TCCATTTGTTCATGCGTGGGGAAGAACAGATGCGTGTCCGTGCTGCTGAT
GCTACAAGTTCGTCACCTGAGGGGACTGAGTGTTTATCCTCTTGCAGTGA
TGATACACAGTTCTAGTCCACGTTTCAAGAGAATAAAGAGTACCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig76:208225..214570+

>mRNA_P-littoralis_Contig76.90.1 ID=mRNA_P-littoralis_Contig76.90.1|Name=mRNA_P-littoralis_Contig76.90.1|organism=Pylaiella littoralis U1_48|type=CDS|length=927bp|location=Sequence derived from alignment at P-littoralis_Contig76:208225..214570+ (Pylaiella littoralis U1_48)
ATGCACACCATCTATAATGACAACAACGGGAGCAGAAGGGCGAGGCGGCG
ACTAGAGCCACCACTGCCGCCGAGCGTGGTTGCGGCAAGCAACAACGAGA
TGAAAACAAGGCTGTCCACGTCCTCCCTGATCCTCGGCAATGTCGGTCCC
GAGACGAGGGACTGGAGCCTCTCCAGCACGCAGCTACGGCCCACAGGTGC
CGGAGCCCTTGATCCGGCCCAGCGAGCGAAAAATGTCATCATGAAACAAG
CATTACAGACGGCTCAAATAGTGTTGGGAGAAGACCGGGCCGAGTGGGGA
GCGTCCAATACCATGCCGGCGCCGACGGGTGATGTATCTCGCTACCGGGG
ACGGCTTACAGCAGAGACCGCCAATTTCATCAAGACCTCAAGCTTGAAAA
TGGGATCATCAAACCCGGGTTCCCAATACACGACGTCGATGTCGAGAGAG
GGCTTGAAAACGCCGGACCACAACGCTTCAGTCGAGCTCTTCAACAGCAA
TCGATCGCTTCACGACAAACTCAGAGAAGCGGGACGAACAACGCGAATAA
TCGACCCCGACGGGGATAAGGGGGCACGCTATGAGAGAAGCAACATCATG
CCGGACCTCACGAGCCGTATGCACGAAGCCAAGTCGTCGCCGGAGGCAAA
TCGACAGCTGATGCTGCGAATCCGGCGATCCAACGTTCAACTCGGCGACG
GCCGGATCAAGACGTTGACGACGACGCAGCACGACTCTATGGACGAAGTG
GTCGAGGCGACCAGCAAAATGGAGCCGGGCTTTAACGCGAGGACCAAGCA
GGACCCTCGGTACTCGAGCATCAAGCTGGGAAACCCGGACATGGAAAGCC
AGTGGTCCACGTCAAACAAAATGCCGAACTGGTACGCGCCGGAAACCTAC
ACGAGACAAGCCACCCCGAACTTGTAA
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