mRNA_P-littoralis_Contig76.73.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig76.73.1
Unique NamemRNA_P-littoralis_Contig76.73.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig76.73.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.790e-9
Identity = 57/167 (34.13%), Postives = 87/167 (52.10%), Query Frame = 1 
Query:    1 SGDAQRARDVAK-FGDRPDDWINPFSLAFVLFGRPAGEQEDVDLKCKVSGGGKTGAAATAAVEPGGADVGSAAKAHG------LGMHDLANLDGAGGGAGGQQSRAAVKE-RHVANSEAKRAEESKATAKFRAEALKAMTAPVESSESSKRLALSVETLTRTAVLRQ 477
            +GDA+   D+ + +G +P+ W++P SL F +FGRPAG  EDVDLK K++ G  +G                            L    L  ++    GAGG+ SRA +K   H  N+E K+ + ++A A  +  AL+A++ P E S+SS  L  SV+ LTR  V ++
Sbjct:  270 AGDAETEDDLTRLYGPKPEHWLHPASLVFAIFGRPAGTNEDVDLKLKMTSGRPSGTKXXXXXXXXXXXXXXXXXXXEDESKPCLSTKGLKLMN----GAGGKHSRAEMKTLAHEVNAENKKLKGAEADAVLKRRALEALSTPPEDSKSSLELVESVKALTRAVVSKE 432
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE2.790e-934.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig76contigP-littoralis_Contig76:170043..170532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size492
Hectar predicted targeting categoryother localisation
Exons1
Cds size489
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791566.5871456-CDS-P-littoralis_Contig76:170042..1705311680791566.5871456-CDS-P-littoralis_Contig76:170042..170531Pylaiella littoralis U1_48CDSP-littoralis_Contig76 170043..170531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig76.73.1prot_P-littoralis_Contig76.73.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig76 170043..170531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig76.73.1

>prot_P-littoralis_Contig76.73.1 ID=prot_P-littoralis_Contig76.73.1|Name=mRNA_P-littoralis_Contig76.73.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=163bp
SGDAQRARDVAKFGDRPDDWINPFSLAFVLFGRPAGEQEDVDLKCKVSGG
GKTGAAATAAVEPGGADVGSAAKAHGLGMHDLANLDGAGGGAGGQQSRAA
VKERHVANSEAKRAEESKATAKFRAEALKAMTAPVESSESSKRLALSVET
LTRTAVLRQRLAE
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mRNA from alignment at P-littoralis_Contig76:170043..170532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig76.73.1 ID=mRNA_P-littoralis_Contig76.73.1|Name=mRNA_P-littoralis_Contig76.73.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=490bp|location=Sequence derived from alignment at P-littoralis_Contig76:170043..170532+ (Pylaiella littoralis U1_48)
AGTGGAGATGCTCAACGTGCACGTGACGTGGCTAAATTCGGCGACAGGCC
CGACGACTGGATCAATCCCTTCAGCCTTGCCTTCGTGTTGTTCGGGCGGC
CCGCCGGCGAGCAAGAGGATGTAGACCTCAAATGCAAGGTGTCTGGAGGC
GGCAAGACAGGCGCGGCAGCAACTGCCGCGGTCGAACCGGGGGGTGCGGA
CGTTGGTTCTGCGGCGAAAGCCCATGGGCTCGGCATGCACGACCTGGCCA
ATCTGGATGGGGCCGGGGGCGGGGCCGGCGGTCAGCAAAGTCGCGCGGCA
GTTAAGGAGAGGCATGTCGCGAACTCAGAGGCAAAGAGGGCGGAAGAGAG
TAAGGCCACCGCTAAGTTTAGGGCTGAGGCCTTGAAGGCCATGACTGCCC
CCGTCGAATCTTCGGAGAGCTCGAAGAGACTGGCCCTTAGCGTGGAAACG
CTCACCAGGACTGCCGTGCTGAGGCAGCGTCTCGCTGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig76:170043..170532+

>mRNA_P-littoralis_Contig76.73.1 ID=mRNA_P-littoralis_Contig76.73.1|Name=mRNA_P-littoralis_Contig76.73.1|organism=Pylaiella littoralis U1_48|type=CDS|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig76:170043..170532+ (Pylaiella littoralis U1_48)
AGTGGAGATGCTCAACGTGCACGTGACGTGGCTAAATTCGGCGACAGGCC
CGACGACTGGATCAATCCCTTCAGCCTTGCCTTCGTGTTGTTCGGGCGGC
CCGCCGGCGAGCAAGAGGATGTAGACCTCAAATGCAAGGTGTCTGGAGGC
GGCAAGACAGGCGCGGCAGCAACTGCCGCGGTCGAACCGGGGGGTGCGGA
CGTTGGTTCTGCGGCGAAAGCCCATGGGCTCGGCATGCACGACCTGGCCA
ATCTGGATGGGGCCGGGGGCGGGGCCGGCGGTCAGCAAAGTCGCGCGGCA
GTTAAGGAGAGGCATGTCGCGAACTCAGAGGCAAAGAGGGCGGAAGAGAG
TAAGGCCACCGCTAAGTTTAGGGCTGAGGCCTTGAAGGCCATGACTGCCC
CCGTCGAATCTTCGGAGAGCTCGAAGAGACTGGCCCTTAGCGTGGAAACG
CTCACCAGGACTGCCGTGCTGAGGCAGCGTCTCGCTGAA
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