mRNA_P-littoralis_Contig76.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig76.71.1
Unique NamemRNA_P-littoralis_Contig76.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig76.71.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.440e-27
Identity = 79/198 (39.90%), Postives = 109/198 (55.05%), Query Frame = 3 
Query:  153 LPLVTNDLSAMLLTTIGNCSKENSKHLAMVQNAVVYYQCLVTKRKIGTTNTEGRDAHAKQNYLDHTVPAFFAWWDKSCKLPIPAWLTPKLMGRSTLTDRTNRLCTVDGAIWSKYSEAGKVIKRDFNLLWDSLR---TADGELPSGQQETDAWENLQDGLYYTWKKENEKVKMGNKRNKAAKNNPVVLTGGEGDQTLSG 737
            L L  N+ S  LL  + + +K+  KHL+++QNA  YYQCLVTKR+ GT +T+ RDAHA+ NY + TVP+F  WW        P+WLT  LMG +T  D  +   TV    W   S   +V  R      +S       DG+LPSG Q  D WENLQ  L++  ++   + K     N  AK+ P+VLTG +  +T +G
Sbjct:    6 LLLPRNEHSDDLLEYLSH-TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQQRDAHARTNYKNFTVPSFLCWWKTVVIQTPPSWLTQDLMGMTTGNDSGSTTPTV----WFGPSTY-RVAVRSGGTSTESGTGDFLVDGDLPSGMQAEDIWENLQLYLWFEDRRTAGRKKEVAAANARAKSQPIVLTGDDDGETEAG 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE1.440e-2739.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig76contigP-littoralis_Contig76:167604..169967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size931
Hectar predicted targeting categoryother localisation
Exons3
Cds size795
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791566.4852552-UTR-P-littoralis_Contig76:167603..1677371680791566.4852552-UTR-P-littoralis_Contig76:167603..167737Pylaiella littoralis U1_48UTRP-littoralis_Contig76 167604..167737 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791566.4956677-CDS-P-littoralis_Contig76:167737..1680531680791566.4956677-CDS-P-littoralis_Contig76:167737..168053Pylaiella littoralis U1_48CDSP-littoralis_Contig76 167738..168053 +
1680791566.5135467-CDS-P-littoralis_Contig76:168638..1687321680791566.5135467-CDS-P-littoralis_Contig76:168638..168732Pylaiella littoralis U1_48CDSP-littoralis_Contig76 168639..168732 +
1680791566.5332596-CDS-P-littoralis_Contig76:169582..1699671680791566.5332596-CDS-P-littoralis_Contig76:169582..169967Pylaiella littoralis U1_48CDSP-littoralis_Contig76 169583..169967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig76.71.1prot_P-littoralis_Contig76.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig76 167738..169967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig76.71.1

>prot_P-littoralis_Contig76.71.1 ID=prot_P-littoralis_Contig76.71.1|Name=mRNA_P-littoralis_Contig76.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=265bp
MEEIFPLPLVTNDLSAMLLTTIGNCSKENSKHLAMVQNAVVYYQCLVTKR
KIGTTNTEGRDAHAKQNYLDHTVPAFFAWWDKSCKLPIPAWLTPKLMGRS
TLTDRTNRLCTVDGAIWSKYSEAGKVIKRDFNLLWDSLRTADGELPSGQQ
ETDAWENLQDGLYYTWKKENEKVKMGNKRNKAAKNNPVVLTGGEGDQTLS
GESTAAREKAQQQSEEEVAAARQGATADSQSAPISTVSAVAAKWMAQQAA
ESVRADITGTKEGQA
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mRNA from alignment at P-littoralis_Contig76:167604..169967+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig76.71.1 ID=mRNA_P-littoralis_Contig76.71.1|Name=mRNA_P-littoralis_Contig76.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2364bp|location=Sequence derived from alignment at P-littoralis_Contig76:167604..169967+ (Pylaiella littoralis U1_48)
TTTTAGGTAGCCGTTAGGGGGTGCGAAGTAGTGCCGAATATACACGGAGC
CTCTCCAACTGCATCCAGCCCACAGTCGCCTTCGCTGCTGTGTATGCACA
CGCCGGCAACACGCGCACGCCCTCTCTCAGCAGCATGGAGGAAATTTTTC
CTCTACCCCTGGTCACTAATGATCTCTCGGCTATGCTGCTCACAACCATC
GGGAATTGTTCCAAGGAGAACTCGAAGCATCTAGCCATGGTTCAAAACGC
GGTTGTGTACTATCAGTGCCTCGTGACGAAGCGCAAGATCGGCACCACCA
ACACCGAAGGACGGGATGCACACGCAAAGCAGAACTACCTCGACCACACC
GTTCCTGCTTTCTTTGCGTGGTGGGATAAGTCCTGCAAGCTGCCGATTCC
TGCGTGGCTGACGCCGAAGCTCATGGGCCGGAGCACGCTGACTGATCGAA
GTGAGATGGGGAAAGATTTGTAGGTTGGAGCAACTGCAGCAGCAGCTGCT
GCAGCGGCAGCAGTAACAGCAGTACCGGTACCAGTGTTTGCGTGCCACAA
ACTCTCAAGGAGGCTCACGCCAGCTATTTTTCGCCTCTGTGCTGTTTCAG
CCTTTGATTGCGAGTTCATCTGCTGGCACATCCAATAGGGTTTGCTGCAC
ACATCATATCTTGGAATAACTTTGTCGAGAAAGAAAAAGAAACATGCTGT
ATCTGATACCACGTACGTACCTAGAATTTGCTCGTTCCCGAGGACAGCAG
CACAACAGCAGAAGTACATACAAGACCACGCCTCTGCATCACGAACGACG
CACATCCAACGAACCGTGTGCGTTATGCGGCAACACTCTGTCTACCTGAT
TTATCATTAATTATTTACATAACGCTTTGTTTGTATTGCTGCCCAGTGCT
TTGGCTTGTTCATAGCTTGAAGCCCTTTGCCGAGTGAGACGCTCGAAACC
ATGCCGACATATCAGTGCTTGACGAATAGCCCTCCACCCCGTTGGCCTCC
TCGTTGCGTCCCGTCACGTTGTTGCCCCCGTGCAGCTAATAGGCTGTGCA
CAGTTGATGGTGCTATCTGGAGCAAGTACTCGGAAGCTGGCAAAGTTATT
AAGAGGGACTTCAACCTCCTCTGGGACAGGTGGGCGGTGATGACGGTGTT
CCCAAGTACTTTTGTAGACCTGTTTGCCAGATACAATCGACAAATCAAGA
TCGAGGTTATAGGTCCTAGCGCAACAGACCTCGTGGTGTGATACGGATGA
CACGGCAGGGTTTGCCTGCAGAGCAACGCAATGAACATGAATATAGGTAC
AGGCACCACCCGTTTGAGAAGCCGAAGACATCTATTGATGAGTGACTAGC
GGTCATGTAGGCGATGGCGCAGGTCCGAGCCCGCATCATATACATCGTCG
CTGCAAGATGGGTGACACACACTAAATACGACCGACAAACAGCAGCAGTA
GACAACATCAGGGTGCTCTGTTTTCTCGTCTGCTTCGCACGTTTGTGAGC
CAATGTTGAAGGATGGCTCCAAATACCACCAATGCCACGAAAGTTTTTTC
CGTTTTCTCGCAAAAGGGGTGTAAACCTCCGGTTGGTCGCTGTCTCTTGT
TGCGTTAAATGAGCGCCACGAGTAAACGTTACCGCTGCAAATGTTCCGCC
AAGTTCTGTGCGTTCTTGCGTACCCAACTTCACGCCGCTAGCCGCCAAGG
TGTTTGCGTGTGTGCCAAACACTTTGGTCTGGCTCTCTAAGTTCTCGTTC
ACGTGATGATTGGTGTTCATTTTCTCTACTGGTAGTCGCCTCGAGGATCT
GACTTTTGTTTTGCACGTTTGACAATTCCAAGTACCACGCGCAGCTCATA
CCATCGTGCGTCGGAGCTCGGACCATCTATATCTCAACGTGTTGGTCGAA
GACGACACAGCATGCTCGCCAGATAATTTACCAAAGGTTATTTGTTGTCT
AATCCTCTGCGTTCCGTGTTCGTTGCCAGTTTGAGGACAGCAGATGGTGA
ACTTCCTTCAGGACAGCAGGAGACCGACGCCTGGGAAAACCTGCAGGACG
GGCTATACTACACCTGGAAGAAAGAAAACGAGAAGGTGAAGATGGGGAAC
AAGCGAAACAAAGCGGCGAAGAATAATCCCGTGGTGTTGACGGGAGGCGA
GGGGGACCAAACACTGTCCGGGGAGTCGACGGCAGCCCGGGAAAAGGCAC
AGCAGCAGTCGGAAGAGGAGGTGGCTGCAGCAAGGCAAGGTGCGACGGCG
GATTCCCAATCCGCCCCAATATCCACCGTGTCGGCGGTGGCGGCGAAGTG
GATGGCCCAGCAAGCAGCTGAGAGCGTGAGGGCAGACATTACCGGTACCA
AGGAAGGGCAAGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig76:167604..169967+

>mRNA_P-littoralis_Contig76.71.1 ID=mRNA_P-littoralis_Contig76.71.1|Name=mRNA_P-littoralis_Contig76.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=795bp|location=Sequence derived from alignment at P-littoralis_Contig76:167604..169967+ (Pylaiella littoralis U1_48)
ATGGAGGAAATTTTTCCTCTACCCCTGGTCACTAATGATCTCTCGGCTAT
GCTGCTCACAACCATCGGGAATTGTTCCAAGGAGAACTCGAAGCATCTAG
CCATGGTTCAAAACGCGGTTGTGTACTATCAGTGCCTCGTGACGAAGCGC
AAGATCGGCACCACCAACACCGAAGGACGGGATGCACACGCAAAGCAGAA
CTACCTCGACCACACCGTTCCTGCTTTCTTTGCGTGGTGGGATAAGTCCT
GCAAGCTGCCGATTCCTGCGTGGCTGACGCCGAAGCTCATGGGCCGGAGC
ACGCTGACTGATCGAACTAATAGGCTGTGCACAGTTGATGGTGCTATCTG
GAGCAAGTACTCGGAAGCTGGCAAAGTTATTAAGAGGGACTTCAACCTCC
TCTGGGACAGTTTGAGGACAGCAGATGGTGAACTTCCTTCAGGACAGCAG
GAGACCGACGCCTGGGAAAACCTGCAGGACGGGCTATACTACACCTGGAA
GAAAGAAAACGAGAAGGTGAAGATGGGGAACAAGCGAAACAAAGCGGCGA
AGAATAATCCCGTGGTGTTGACGGGAGGCGAGGGGGACCAAACACTGTCC
GGGGAGTCGACGGCAGCCCGGGAAAAGGCACAGCAGCAGTCGGAAGAGGA
GGTGGCTGCAGCAAGGCAAGGTGCGACGGCGGATTCCCAATCCGCCCCAA
TATCCACCGTGTCGGCGGTGGCGGCGAAGTGGATGGCCCAGCAAGCAGCT
GAGAGCGTGAGGGCAGACATTACCGGTACCAAGGAAGGGCAAGCG
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