mRNA_P-littoralis_Contig76.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig76.63.1
Unique NamemRNA_P-littoralis_Contig76.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig76.63.1 vs. uniprot
Match: D7FQI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI7_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 8.510e-84
Identity = 158/269 (58.74%), Postives = 177/269 (65.80%), Query Frame = 1 
Query:    1 RALRRENLAEVKRFLDEGGDVETVGGRFHSTLLTEASRFRVAKVVGLLLERGAAANVSGGGFWTPLHYACDGPGRGSAAIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ARGSTAAALALLKAAGXXXXXXXXXXXXXXXXXXXNGWREVIAVLLDFGGDISAVDRQLDTPLHCATRERQRLVMSLLESAGADPEARNCWGDLAGTLAPGYKMNPAMLRDDNHDIDAGPCVACSAKKGLHYYFCKSEILQGVPDSLILGPDGLPIV 804
            RA+RR NLAEVKRFLDEGG+VETVGGRFHSTLLTEA RFR  KV+ LLLERGAAANVSGGGFWTPLHYAC+GP RG+AA AA                              ++GS A ALALL+A G     XXXXXXXXXXXXXX                                RERQ L MSLLESAGADP A+NCWG+LAGTLAP YKMNP +  +++ D D GPC+ACSA KG HYYFC+SEILQ +PDS++LGPDG P V
Sbjct:   17 RAIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLTEACRFRATKVIDLLLERGAAANVSGGGFWTPLHYACNGPCRGTAAAAAAAKLVTTLVANHGEVDATDFYGRTPLHLACSKGSAAVALALLEA-GAEPNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERQSLAMSLLESAGADPGAKNCWGELAGTLAPDYKMNPVVHDEEHQDADTGPCIACSATKGRHYYFCRSEILQELPDSMVLGPDGKPRV 284
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BLAST of mRNA_P-littoralis_Contig76.63.1 vs. uniprot
Match: A0A6H5JVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF4_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 1.640e-71
Identity = 149/269 (55.39%), Postives = 167/269 (62.08%), Query Frame = 1 
Query:    1 RALRRENLAEVKRFLDEGGDVETVGGRFHSTLLTEASRFRVAKVVGLLLERGAAANVSGGGFWTPLHYACDGPGRGSAAI-AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGSTAAALALLKAAGXXXXXXXXXXXXXXXXXXXNGWREVIAVLLDFGGDISAVDRQLDTPLHCATRERQRLVMSLLESAGADPEARNCWGDLAGTLAPGYKMNPAMLRDDNHDIDAGPCVACSAKKGLHYYFCKSEILQGVPDSLILGPDGLPIV 804
            RA+RR NLAEVKRFLDEGG+VETVGGRFHSTLLTEA RFR  KV+ LLLERGAAANVSGGG WTPLHYAC+GP RGSAA  AA                             ++GS A ALA      XXXXXXXXXXXXXXXXXXX                                           ESAGADP A+NCWG+LAGTLAP YKMNP +  +++ D D GPC+ACSA KG HYYFC+SE+LQ +PDS++LGPDG P V
Sbjct:   20 RAIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLTEACRFRATKVIELLLERGAAANVSGGGCWTPLHYACNGPCRGSAAATAAAELVTTLVENHGDVDATDFYGRTPLHLACSKGSAAVALAXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESAGADPAAKNCWGELAGTLAPDYKMNPVVHDEEHQDADTGPCMACSATKGRHYYFCRSEVLQDLPDSMVLGPDGKPRV 287
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQI7_ECTSI8.510e-8458.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVF4_9PHAE1.640e-7155.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig76contigP-littoralis_Contig76:150035..151957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FQI7
Preferred nameANKRD42
PFAMsAnk,Ank_2,Ank_4,Ank_5
Model size822
Max annot lvl2759|Eukaryota
KEGG koko:K06694,ko:K10329,ko:K17593
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.4e-84
EggNOG OGsCOG0666@1|root,KOG4412@2759|Eukaryota
Descriptionproteasome regulatory particle assembly
Cds size822
COG categoryL
BRITEko00000,ko01009,ko03051,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791566.2122624-CDS-P-littoralis_Contig76:150034..1504101680791566.2122624-CDS-P-littoralis_Contig76:150034..150410Pylaiella littoralis U1_48CDSP-littoralis_Contig76 150035..150410 +
1680791566.224934-CDS-P-littoralis_Contig76:150823..1511231680791566.224934-CDS-P-littoralis_Contig76:150823..151123Pylaiella littoralis U1_48CDSP-littoralis_Contig76 150824..151123 +
1680791566.2358115-CDS-P-littoralis_Contig76:151811..1519571680791566.2358115-CDS-P-littoralis_Contig76:151811..151957Pylaiella littoralis U1_48CDSP-littoralis_Contig76 151812..151957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig76.63.1prot_P-littoralis_Contig76.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig76 150035..151957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig76.63.1

>prot_P-littoralis_Contig76.63.1 ID=prot_P-littoralis_Contig76.63.1|Name=mRNA_P-littoralis_Contig76.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp
RALRRENLAEVKRFLDEGGDVETVGGRFHSTLLTEASRFRVAKVVGLLLE
RGAAANVSGGGFWTPLHYACDGPGRGSAAIAAAKLVAILIEHHAEVDATD
FRGRTPLHLACARGSTAAALALLKAAGAEPNVGDDDGRTPAHYAASNGWR
EVIAVLLDFGGDISAVDRQLDTPLHCATRERQRLVMSLLESAGADPEARN
CWGDLAGTLAPGYKMNPAMLRDDNHDIDAGPCVACSAKKGLHYYFCKSEI
LQGVPDSLILGPDGLPIVAGEKK*
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mRNA from alignment at P-littoralis_Contig76:150035..151957+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig76.63.1 ID=mRNA_P-littoralis_Contig76.63.1|Name=mRNA_P-littoralis_Contig76.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1923bp|location=Sequence derived from alignment at P-littoralis_Contig76:150035..151957+ (Pylaiella littoralis U1_48)
AGGGCCTTAAGGAGAGAAAATCTAGCCGAGGTGAAACGCTTTCTCGACGA
AGGTGGGGATGTAGAAACAGTCGGTGGTCGGTTCCATTCCACTCTTTTGA
CAGAGGCCAGCCGGTTCCGCGTCGCCAAGGTTGTCGGCCTACTTCTCGAG
CGGGGCGCGGCCGCCAACGTCTCGGGCGGAGGCTTCTGGACGCCGCTCCA
CTACGCCTGCGATGGGCCCGGACGAGGCAGTGCGGCTATCGCGGCGGCTA
AGCTGGTGGCGATATTGATCGAACACCACGCGGAGGTGGATGCGACCGAT
TTCCGGGGCCGAACTCCGTTGCACCTCGCCTGCGCACGAGGTTCCACGGC
TGCGGCGCTCGCCCTGTTAAAGGCCGGTAGGCACTACTACTGCTTGCTTG
AGGATGGGGCAAGAAATATCATTTTCAAACGCTTTACTGTGGTCGGCCGT
GCATGCTGATGGATATAGCTGTATTACACGCCGCTACAGTGCAACGTTGT
GTAGTACACACAAGCACATACCTCCAACGTATCATGCGTTATATGGTGAC
TACTCCTGAAGTACCAAATAATCTACTGGCACTAGTCAACGTGCTGTGAT
GCTCACATGACACCCCCGTCTGTGTCGAAGCAGGTACCTACCTGAAGTGC
GTACCACATTCAACACTCAGCCAGCTCCCCCCCCCCCCTCCCGTGTACTA
AAATGTGAAGACAACGACGACGAGGGCAGAGAACGAAGCCATCGCAAACA
ATCACCACTCACACCGTCAGTGCATTGTGTCACTCTCAGCAGGCGCCGAA
CCGAATGTGGGGGACGATGACGGCCGTACGCCCGCGCACTACGCAGCCTC
GAACGGCTGGCGGGAGGTCATCGCCGTTTTACTAGACTTCGGCGGAGATA
TATCGGCGGTGGATCGACAATTGGACACTCCTCTCCACTGCGCCACGAGG
GAGAGACAGAGGCTCGTAATGAGCCTGCTGGAGAGTGCCGGAGCTGATCC
GGAGGCGAGAAATTGCTGGGGGGATCTTGCAGGGACGCTGGCGCCGGGTT
ATAAGATGAATCCGGCAATGCTCCGCGATGACAATCATGGTGACGATGCT
AATGCGTAAGGTCGCATAAGATACCACATGGGACCATCTGGGCCAGTCTT
GAAACCGCGATAATTCCACGACAAAGAACGCCCCGCCGACATCAAACGGC
ATCTGCCTAAGTTTTTTGGAAAGCTATCGACGAAAAGGTTTGCTTCAACG
CCGCCCTTTCGGCGCTGGCACTCTTCCTTCTAGTATCAGACTGTGGAGTA
CCGGAGCTGTCAAAATCGGTTCAGCCAGGGGGATTTTATGTCTTGCGCGA
CGTGTGGTGATGGCGGCGGCGGTGATGCTGTTGGCACACATTCATGCCGC
GATGGTACTTTTACTTTTGTCCCCCTGTGAAAAATGATGGAAGGTTTCTC
TCTAACATAAGCTCAGTAAAAGCAAGCGAACGCGTGTCGCCATTTTAATG
GCGACGCGTTCGCTTGCTTGTAGGATGCGTTTTGAAATTGAGTGTGTATG
ATAGCGAGGTGAAGGTTTCGCTATTGAGAGTCACGTGATATTCCTGCCTG
GTGACGAGTAACAAAATGGCGGCGTCTAGCCACCTAGCGGTCAGAGGGTC
AAGTATTTCGTTTTCCGCACTAACAACGACATCCGGTCGTTTCCTTTCCT
CTTTCCTTTGCCCCCTTTCCACTTCACACCACACCTTCGTGCAGCCCGGA
GGCGTGACCGAAGGGATCAGGAGCAAGACATAGACGCGGGCCCCTGCGTG
GCGTGCTCCGCCAAGAAGGGTCTACACTACTACTTCTGCAAGAGCGAGAT
CTTGCAGGGAGTGCCCGACAGTTTGATTCTCGGCCCGGATGGTCTGCCCA
TTGTCGCGGGAGAAAAAAAATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig76:150035..151957+

>mRNA_P-littoralis_Contig76.63.1 ID=mRNA_P-littoralis_Contig76.63.1|Name=mRNA_P-littoralis_Contig76.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig76:150035..151957+ (Pylaiella littoralis U1_48)
AGGGCCTTAAGGAGAGAAAATCTAGCCGAGGTGAAACGCTTTCTCGACGA
AGGTGGGGATGTAGAAACAGTCGGTGGTCGGTTCCATTCCACTCTTTTGA
CAGAGGCCAGCCGGTTCCGCGTCGCCAAGGTTGTCGGCCTACTTCTCGAG
CGGGGCGCGGCCGCCAACGTCTCGGGCGGAGGCTTCTGGACGCCGCTCCA
CTACGCCTGCGATGGGCCCGGACGAGGCAGTGCGGCTATCGCGGCGGCTA
AGCTGGTGGCGATATTGATCGAACACCACGCGGAGGTGGATGCGACCGAT
TTCCGGGGCCGAACTCCGTTGCACCTCGCCTGCGCACGAGGTTCCACGGC
TGCGGCGCTCGCCCTGTTAAAGGCCGCAGGCGCCGAACCGAATGTGGGGG
ACGATGACGGCCGTACGCCCGCGCACTACGCAGCCTCGAACGGCTGGCGG
GAGGTCATCGCCGTTTTACTAGACTTCGGCGGAGATATATCGGCGGTGGA
TCGACAATTGGACACTCCTCTCCACTGCGCCACGAGGGAGAGACAGAGGC
TCGTAATGAGCCTGCTGGAGAGTGCCGGAGCTGATCCGGAGGCGAGAAAT
TGCTGGGGGGATCTTGCAGGGACGCTGGCGCCGGGTTATAAGATGAATCC
GGCAATGCTCCGCGATGACAATCATGACATAGACGCGGGCCCCTGCGTGG
CGTGCTCCGCCAAGAAGGGTCTACACTACTACTTCTGCAAGAGCGAGATC
TTGCAGGGAGTGCCCGACAGTTTGATTCTCGGCCCGGATGGTCTGCCCAT
TGTCGCGGGAGAAAAAAAATGA
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