mRNA_P-littoralis_Contig76.46.4 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig76.46.4 vs. uniprot
Match: A0A6H5JZQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ7_9PHAE) HSP 1 Score: 931 bits (2405), Expect = 5.670e-309 Identity = 774/1292 (59.91%), Postives = 855/1292 (66.18%), Query Frame = 1
Query: 13 GGESRRLPGMSHLKGVLRAELQAQGMLGGPSXXXXXXXXXXXXXXXXXXXXASSGEGIFLNMLRRLENVDVAGEDSPTAAAXXXXXXEGTENWDVGCSDNGRDGGDCGEQRXXXXXXXXXXXXXXXXGEGHHQEGASGVGSSFAGVGAKLRSKFRKPGGGFGLAQGGSDGXXXXXXXXXXXQTPTGVAAAEGAGEGGKAFVEGASKALAANRERVMGWMKELRPKDWSPKQADEGAEAESLQELRRAVRRLYLDAPDPAVHTAMVVARARPAAPRADAAAQAAKGE---AEDAAAGAAVPATAVR---GVDRVVGTGADRHLTKLVWFRSSSGGGFAEIKGVDGPYYQPSADDVGTRICVKCTLAGAALNFGGSGA---LSPA-AGKGRRGRPALGGGXXXXXSPQSPQRHQAQVTFAEVGPIVLDPAVGTEVDKLLAAAEGPAVFEGLVRRDIPGEPVRVRVEIGAEKVRVLADPGSTGAARNKLGDEQGARRVGDSNGKAAAVTTPVETQDDAAVTEEGTPPSPTVGVGEDGGDGVLETETKDDSRAVAXXXXXXXXXXXXXXXXXXXXXXNLEGDVVVAEPTVSEVGGGREAAEAATAAVEAADEAVVLAEGTYSSGVLVGLDPARPDVLKLTIGGRQRAEAAG--GGNEAPT----VLLLGAVDGRQRDVLALTLRGHRLAARSD-VAVDDYPEETMAHQEEEDYLELKAAAAHFASAYDEDGVSATETTGSXXXXXXXXXXXXXXXXXGHSGSHXXXXXXXXXXXXXXXXARSGSKYALSSVGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXSGTAGTA--RGSFSSATAAGGPQGRGVVGAVEAASWETIGGSGAEGGEGDNAGDEPRSLSTMLEELRQARAVADARGRQLKEAHSRWEAGDASRQRAEAELSLVSSELDLLRPFSRSLAARAEGKESAEARAASLEAEVETLRGQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVAHADLAKERSGNEEATARASKAERELDQARARAAVLDNKLAALEKEKMELLADANASKARAGALEEKFSAARVAESAEYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEARAKAAVKAEEXXXXXXXXXXXXVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIEIIVTKYADLKVKMATMEAERDGAADLKDDWESDAKGQKGEKGGRKVSEAAKRALRENTELHGRVAAMAESLQMRAHQVEGQRQSNEFLLKRVEELERQVATTSGKMAIGTD 3831
GGE+R +PGMSH+KGV RAELQAQGMLGG XXXXXXXXXXXXXX + GEG+FLNMLRRLENVDVAGEDSP AA XXXXX A GV + GGFGL QG G XXXXXXXX QT G A EG GEGGKAFVEGASKALA NRER+MGWMKELRPKDWSPK+A+ E ES+QELRRAVRRLYLDAPDPA+HTA++VARARP+AP++ AAA E AE+AAA A + VDRV+GTGAD+ LTKLVWFRSSSGGGFAEIKGV+GP+YQPSADD+G+RIC+KCTLAG ALN GG+G+ LSP GK RRGR G XXXXX +SPQR Q QV+FAEVGPIVLD AVG EVDKLL+A +GPAVF GLVRRD PGE VRVRVE+G E++RV+A PG AA G+ GA G + AAA + Q AV E + G GE E ET G+V A GG+ + A + A VVLAEG YSSGVLV L+PARP L+LT+G RQ EAA G ++APT VLLLGAVDG QRDVLALTLRG R AA + VDDYPEET AHQ EDYLELKAAAA+FASAYDEDG SAT +G XXXXXXXXXXXXXXXXX XXXXXXXXX XXXXX XXXXXXXX SGT A RGSF +A AGDEPRSL+ +LE+LRQARA+AD RGRQLKEAHS WEAG+ASRQ+AEAELSLVSSELDLLRPFS+SLAARAEGKE+AE A +L +EVETLR QL XXXXXXXXXX VAH++LAKER+G EEA ARASKAERELDQARARAAVL+NKLA LEK+K+ELLADAN+S+ARA ALEEK+SAAR AE+AE XXXXXXXXXXXXXX XXXXXXXXXXXXX RA AVK EE VMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIE IVTKYADLKVKMA MEAE+DGAADL D+W+S++KG++GE GGRKVSEAAKRALRENTELHGRVAAM ESLQMRAHQ+EGQRQSNEFLLKRVEELE+QVATTSGK AIGTD
Sbjct: 209 GGEAR-IPGMSHIKGVFRAELQAQGMLGGSGDGXXXXXXXXXXXXXXDS--SPPGEGLFLNMLRRLENVDVAGEDSPRVAAAXXXXXXXX---------------------------------------------ADGVAN-----------------GGFGLPQG-VGGRGXXXXXXXXDQTVGG--ATEGVGEGGKAFVEGASKALAVNRERMMGWMKELRPKDWSPKEAERAVEEESIQELRRAVRRLYLDAPDPAIHTAIIVARARPSAPKSAAAAAEXXAEGPTAEEAAAAVGEVAETPKEAGAVDRVIGTGADKRLTKLVWFRSSSGGGFAEIKGVEGPFYQPSADDLGSRICIKCTLAGTALNLGGTGSGGFLSPTNRGKERRGRH---GRXXXXXXSRSPQRQQDQVSFAEVGPIVLDSAVGAEVDKLLSA-DGPAVFRGLVRRDTPGETVRVRVEVGREQIRVVAQPGDAAAAAVADGNSPGAEPPGVTVETAAAASV----QPAGAVAEGSPEAALATGSGEKDDGAAAEEET------------------------------GAGGEVAAAAD------GGKPSPSATSQDGAEATAVVVLAEGRYSSGVLVTLEPARPTALRLTVGRRQGGEAAAAVGVSQAPTPPAVVLLLGAVDGIQRDVLALTLRGRRQAALGPGITVDDYPEETKAHQAHEDYLELKAAAANFASAYDEDGTSATSKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTXXXXXXXXXXXXXXXXX-------------XXXXXXXXRRASWKGGGSGTLARAASRGSFPAA----------------------------------GAGDEPRSLTDLLEDLRQARAIADYRGRQLKEAHSMWEAGEASRQKAEAELSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLASEVETLREQLAAAVESAERLGSRAGTAEDEAGASASKLSGLEXXXXXXXXXXXVAHSELAKERAGAEEAVARASKAERELDQARARAAVLENKLATLEKDKLELLADANSSRARASALEEKYSAARAAEAAESXXXXXXXXXXXXXXXSENLKAVXXXXXXXXXXXXXXXRADKAVKMEEDTRAEMAGKTEEVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIEAIVTKYADLKVKMAAMEAEKDGAADLVDEWQSNSKGERGE-GGRKVSEAAKRALRENTELHGRVAAMTESLQMRAHQLEGQRQSNEFLLKRVEELEQQVATTSGKTAIGTD 1340
BLAST of mRNA_P-littoralis_Contig76.46.4 vs. uniprot
Match: D7FUZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ2_ECTSI) HSP 1 Score: 385 bits (989), Expect = 4.850e-117 Identity = 282/375 (75.20%), Postives = 303/375 (80.80%), Query Frame = 1
Query: 2707 LSLVSSELDLLRPFSRSLAARAEGKESAEARAASLEAEVETLRGQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVAHADLAKERSGNEEATARASKAERELDQARARAAVLDNKLAALEKEKMELLADANASKARAGALEEKFSAARVAESAEYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEARAKAAVKAEEXXXXXXXXXXXXVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIEIIVTKYADLKVKMATMEAERDGAADLKDDWESDAKGQKGEKGGRKVSEAAKRALRENTELHGRVAAMAESLQMRAHQVEGQRQSNEFLLKRVEELERQVATTSGKMAIGTD 3831
LSLVSSELDLLRPFS+SLAARAEGKE+AE A +L EVETLR QL XXXXXEVAH++LAKER+G EEA ARASKAERELDQARARAAVLDNKLA LEK+K+ELLADAN+S+ARA ALEEK+SAAR AE+ E EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RA AVK EE VMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIE IVTKYADLKVKMATMEAE+DGAADL D+W+S++KG++GE GGRKVSEAAKRALRENTELHGRVAAM ESLQMRAHQ+EGQRQSNEFLLKRVEELE+QVATTSGK AIGTD
Sbjct: 8 LSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLATEVETLREQLAAAVESAERLGSRAGTAEDEAGASASKLSGLEKVVRRXXXXXEVAHSELAKERAGAEEAAARASKAERELDQARARAAVLDNKLATLEKDKLELLADANSSRARASALEEKYSAARAAEAVESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRADKAVKMEEDTRAEMAGKTEEVMRLTAQRNSAKSRADSLAKDLSRVCGGGRTLDQIEAIVTKYADLKVKMATMEAEKDGAADLVDEWQSNSKGERGE-GGRKVSEAAKRALRENTELHGRVAAMTESLQMRAHQLEGQRQSNEFLLKRVEELEQQVATTSGKTAIGTD 381
BLAST of mRNA_P-littoralis_Contig76.46.4 vs. uniprot
Match: D7FUZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ4_ECTSI) HSP 1 Score: 305 bits (781), Expect = 4.240e-87 Identity = 236/415 (56.87%), Postives = 265/415 (63.86%), Query Frame = 1
Query: 958 LTKLVWFRSSSGGGFAEIKGVDGPYYQPSADDVGTRICVKCTLAGAALNFGGSGA---LSPA-AGKGRRGRPALGGGXXXXXSPQSPQRHQAQVTFAEVGPIVLDPAVGTEVDKLLAAAEGPAVFEGLVRRDIPGEPVRVRVEIGAEKVRVLADPGSTGAARNKLGDEQGARRVGDSNGKAAAVTTPVETQDDAAVTEEGTPPSPTVGVGEDGGDGVLETETKDDSRAVAXXXXXXXXXXXXXXXXXXXXXXNLEGDVVVAEPTVSEVGGGREAAEAATAAVEAADEAVVLAEGTYSSGVLVGLDPARPDVLKLTIGGRQRAEAAG--GGNEAPT----VLLLGAVDGRQRDVLALTLRGHRLAARSD-VAVDDYPEETMAHQEEEDYLELKAAAAHFASAYDEDGVSATETTGS 2169
+ LVWFRSSSGGGFAEIKGV+GPYYQPSADD+G+RIC+KCTLAG ALNFGG+G+ LSP GKGRR GGG +SPQR Q QV+FAE GPIVLD VG EVDKLL+A +GPAVF GLVRRD PGE VRVRVE+G E++RV+A+PG AA + G+ GA G + AAA + V+ DD G P + G E +D XXXXXXXXXXXXXXXXXXXXXX VLAEG YS GVLV L+PARP VL+LT+G Q EAA G +APT VLLLGAVDG QRDVLALTLRG R AA V VDDYPEET AHQ EDYLELKAAAA+FASAYDEDG SAT +GS
Sbjct: 8 VAALVWFRSSSGGGFAEIKGVEGPYYQPSADDLGSRICIKCTLAGTALNFGGTGSGGFLSPTNGGKGRRXXXXXGGGRSGS---RSPQRQQDQVSFAEGGPIVLDSPVGAEVDKLLSA-DGPAVFRGLVRRDTPGETVRVRVEVGREQIRVVAEPGDAAAAAD--GNSPGAEPPGVTVETAAAAS--VQPLDDVT----GGSPEAALATG--------SGEKRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------XVLAEGRYSPGVLVTLEPARPTVLRLTVGRGQGGEAAAAVGVRQAPTPPAVVLLLGAVDGIQRDVLALTLRGRRQAALGPGVTVDDYPEETKAHQAHEDYLELKAAAANFASAYDEDGTSATSRSGS 382 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig76.46.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig76.46.4 >prot_P-littoralis_Contig76.46.4 ID=prot_P-littoralis_Contig76.46.4|Name=mRNA_P-littoralis_Contig76.46.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1265bp MSHLKGVLRAELQAQGMLGGPSGGGGGGGNGDTCGDSSGGGGASSGEGIFback to top mRNA from alignment at P-littoralis_Contig76:84151..100836- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig76.46.4 ID=mRNA_P-littoralis_Contig76.46.4|Name=mRNA_P-littoralis_Contig76.46.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=16686bp|location=Sequence derived from alignment at P-littoralis_Contig76:84151..100836- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig76:84151..100836- >mRNA_P-littoralis_Contig76.46.4 ID=mRNA_P-littoralis_Contig76.46.4|Name=mRNA_P-littoralis_Contig76.46.4|organism=Pylaiella littoralis U1_48|type=CDS|length=3795bp|location=Sequence derived from alignment at P-littoralis_Contig76:84151..100836- (Pylaiella littoralis U1_48)back to top |