mRNA_P-littoralis_Contig119.79.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig119.79.1
Unique NamemRNA_P-littoralis_Contig119.79.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig119.79.1 vs. uniprot
Match: A0A6H5JUH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH9_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.820e-24
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:    1 KANRHASAAVKGLEDAINKKIGRVSGVDADVKEQLSAALHSQ------------VALLRVSIQRHMQEAAEETSATTAMESLGMMTELAKREARITQLGSRIEDLQTRLVSINDAHGAELK 327
            +ANR A  A++ LEDA+  ++G + G+D   +E LS AL  Q            V LL+ +I R ++E AEE SAT   ES+ MMTELAKR+ARITQLGSRIEDLQTRLV+INDAH A L+
Sbjct:  854 RANRRALEAMRVLEDAMKNRLGALPGLDPAAREHLSTALREQARDGFRGGGSECVLLLKDTIGRDVREVAEEASATAETESMRMMTELAKRDARITQLGSRIEDLQTRLVNINDAHEAGLE 974
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig119.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUH9_9PHAE2.820e-2453.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig119contigP-littoralis_Contig119:415178..416898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size332
Hectar predicted targeting categoryother localisation
Exons3
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789500.806649-CDS-P-littoralis_Contig119:415178..4152261680789500.806649-CDS-P-littoralis_Contig119:415178..415226Pylaiella littoralis U1_48CDSP-littoralis_Contig119 415179..415226 -
1680789500.8161461-CDS-P-littoralis_Contig119:416269..4164251680789500.8161461-CDS-P-littoralis_Contig119:416269..416425Pylaiella littoralis U1_48CDSP-littoralis_Contig119 416270..416425 -
1680789500.826649-CDS-P-littoralis_Contig119:416772..4168981680789500.826649-CDS-P-littoralis_Contig119:416772..416898Pylaiella littoralis U1_48CDSP-littoralis_Contig119 416773..416898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig119.79.1prot_P-littoralis_Contig119.79.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig119 415179..416898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig119.79.1

>prot_P-littoralis_Contig119.79.1 ID=prot_P-littoralis_Contig119.79.1|Name=mRNA_P-littoralis_Contig119.79.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
KANRHASAAVKGLEDAINKKIGRVSGVDADVKEQLSAALHSQVALLRVSI
QRHMQEAAEETSATTAMESLGMMTELAKREARITQLGSRIEDLQTRLVSI
NDAHGAELKR
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mRNA from alignment at P-littoralis_Contig119:415178..416898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig119.79.1 ID=mRNA_P-littoralis_Contig119.79.1|Name=mRNA_P-littoralis_Contig119.79.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1721bp|location=Sequence derived from alignment at P-littoralis_Contig119:415178..416898- (Pylaiella littoralis U1_48)
AAGGCCAACCGGCACGCCTCGGCGGCCGTGAAAGGACTCGAAGACGCGAT
AAACAAGAAAATCGGCAGAGTTTCGGGTGTGGACGCCGACGTGAAAGAAC
AGCTATCGGCGGCACTTCACAGCCAGGTAAGAACTGGAGACCGGGGGGGC
GGGGGGCGGGAGCAGGGAGTAGAGTATGATGGGAAGGGGGTACGCATATG
GTGTCATTGGACCATTTTGACCACGAATACATCCCTTTCGAGACGGACCA
CCGTGCTTACCCTTGAAGAGCCATCAATACTTGGACGCTCGTTGCATTTT
TGCTGTATCTTTGAGGGGAGGAGGGGGGGGCGAGGAGGCGAAGAGTTGGG
CGAGGGGTGGAGATGACCCACGGTGTTGCCTGGGTTAGGTAGGTTGTAAT
CGAGGCCAGCGCTACGATGACACGTAAAACCTCATCCATACTGGAGCCGC
TATGCTTCTTCGACCAAAACCAGGTAGCGCTGTTGCGGGTTTCTATTCAG
AGGCATATGCAGGAGGCAGCCGAGGAGACATCGGCCACCACGGCGATGGA
GAGCCTGGGGATGATGACGGAGCTAGCGAAGCGGGAAGCGAGAATCACGC
AGCTGGGGTCGCGCATTGAAGACTTGCAGGTCCAGCGCAGCATGTAGTAT
AAGGCAGCAGACTTGCGTATGTTCTGGCAAGGCAATGATGTGATGTACGA
AGTACTTCGTATGTAGCAGCACACCTGCTTCGGGGGAGGTTTCAAAGCCG
AGTCCCAACACACACCGACGAGAGCAAAAAGGTAAAAAAATTGGACGATG
GCGGGTGCAGGTTCTGAAGAAACGCCCATTCACGTTGCCAGTCGTTCGAG
CAGAGCATAGCTCGTTGCGTACACCACGTTTTGTTTTTTAGTCAAGAATG
TAATATGAAATTACCTCCTCTATTCGGTGTTGGGTACATGTATCCCTCTC
CCGCACGGAGGCGCCGGTTTTTTAGCAGCTCGGTTGTTTCGCAATATGAT
ATCCTACTTTCTCAAATAATCCGTGAGTACAGGGTACATGCAGTCTAATG
TCATACCAACGAACGATATTGTTCGTCTTCAGAAGGCTCTCGACAAAGGT
CTCTTCCAACGTAGCCCATCAAAAGGCGACAGTGCTTTCATCATCAAAAA
ACGACCTCCACATGTTGTCTCTTGCATGATAGAATAAAATTCGATCAAGG
CGTTTTAGTCGTTCCGGGGTGGCGGGAAGGGGTGCCCCTTTCTATGTACC
TCGCGGTTCAACGAGCGCATGCTGCGCCACATTTACCTCTGGGACGAAAA
GTAAGGTACGCATGCTTGCTTTCAAAAGGCACTACACCGTAACCTGTTTT
GCGTGTCAGGAGTGGCACTGCTGTCAGACTACGGAATATGCACACCTCCC
TTTCGCGCGCGTGTGATACATAAATGCAGGGCTTCGCTTCTCGGAAAATG
TGAAAACGGGGATAGAGAGAGTCGCGGCCGCAGGCTATCATGGGATGCCC
GTGTCTGTATTTCCCGACAGCTAACTCTAGAGGCCGCCGCCGGCAGACGT
TCGCAGTGCGTGTGCCCCAATACCTCAGCTCGTCGCGCGTTCACAATCAC
GTACCGGTACAGGTACTGTACATGCCTGATGTGCACCTCTTTTGTTGTGG
CAATATTCCTCCTTGAAGACAGACTCGACTGGTGAGTATTAACGACGCCC
ATGGCGCCGAGCTCAAACGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig119:415178..416898-

>mRNA_P-littoralis_Contig119.79.1 ID=mRNA_P-littoralis_Contig119.79.1|Name=mRNA_P-littoralis_Contig119.79.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig119:415178..416898- (Pylaiella littoralis U1_48)
AAGGCCAACCGGCACGCCTCGGCGGCCGTGAAAGGACTCGAAGACGCGAT
AAACAAGAAAATCGGCAGAGTTTCGGGTGTGGACGCCGACGTGAAAGAAC
AGCTATCGGCGGCACTTCACAGCCAGGTAGCGCTGTTGCGGGTTTCTATT
CAGAGGCATATGCAGGAGGCAGCCGAGGAGACATCGGCCACCACGGCGAT
GGAGAGCCTGGGGATGATGACGGAGCTAGCGAAGCGGGAAGCGAGAATCA
CGCAGCTGGGGTCGCGCATTGAAGACTTGCAGACTCGACTGGTGAGTATT
AACGACGCCCATGGCGCCGAGCTCAAACGC
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