mRNA_P-littoralis_Contig119.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig119.71.1
Unique NamemRNA_P-littoralis_Contig119.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig119.71.1 vs. uniprot
Match: D7G263_ECTSI (Chaperone protein dnaJ-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G263_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.050e-56
Identity = 94/124 (75.81%), Postives = 101/124 (81.45%), Query Frame = 2 
Query:  578 ALERQFSQPAAPRGASISEGLGKGTPSASQRLRLQQENLDMRWKMTSKRNQTICCRQCAGEGIEECRFCAGSGMFKIGDELIVNPESGRPPPCPVCRSKGEEVCSRCNGAGRIAAWLFKSERRK 949
            ALERQFSQPAA R   ISEGLGKG PS  +RLRLQQENLDMRW M+ K NQT+CCRQCAGEG+ E       GMFKIG EL+V+P SGRPPPCPVC  KGEEVCSRCNG GRIA+WLFKSERRK
Sbjct:  167 ALERQFSQPAAARRERISEGLGKGVPSPRERLRLQQENLDMRWNMSRKANQTVCCRQCAGEGVVEXXXXXXXGMFKIGSELMVDPASGRPPPCPVCSGKGEEVCSRCNGIGRIASWLFKSERRK 290
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BLAST of mRNA_P-littoralis_Contig119.71.1 vs. uniprot
Match: A0A6H5L0Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z5_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.540e-33
Identity = 57/84 (67.86%), Postives = 64/84 (76.19%), Query Frame = 2 
Query:  698 MRWKMTSKRNQTICCRQCAGEGIEECRFCAGSGMFKIGDELIVNPESGRPPPCPVCRSKGEEVCSRCNGAGRIAAWLFKSERRK 949
            MRW M+ K NQT+CCRQCAGEGIEECRFCAG+GMFKIG EL+V+P SGRPPPCPV               GRIA+WLFKSERR+
Sbjct:    1 MRWNMSRKANQTVCCRQCAGEGIEECRFCAGTGMFKIGSELMVDPASGRPPPCPVXXXXXXXXXXXXXXVGRIASWLFKSERRQ 84
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BLAST of mRNA_P-littoralis_Contig119.71.1 vs. uniprot
Match: A0A8J5G5R7_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5G5R7_ZINOF)

HSP 1 Score: 57.0 bits (136), Expect = 3.590e-5
Identity = 24/65 (36.92%), Postives = 34/65 (52.31%), Query Frame = 2 
Query:  734 ICCRQCAGEGIEECRFCAGSGMFKIGDELIVNPESGRPPPCPVCRSKGEEVCSRCNGAGRIAAWL 928
            I C  C  +G  EC++CAG+G F +G++++    S R   C +C  KG   C  C G    A WL
Sbjct:  496 IACSTCESDGYVECKWCAGTGFFILGNQMLCEVPS-RNTTCIICTGKGSTACPDCKGTDFRAKWL 559
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig119.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G263_ECTSI1.050e-5675.81Chaperone protein dnaJ-related n=1 Tax=Ectocarpus ... [more]
A0A6H5L0Z5_9PHAE2.540e-3367.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J5G5R7_ZINOF3.590e-536.92Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig119contigP-littoralis_Contig119:397601..400460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog218851.Aquca_016_00342.1
Model size1163
Max annot lvl35493|Streptophyta
Hectar predicted targeting categorysignal peptide
Exons4
Evalue2.59e-07
EggNOG OGs2BFA7@1|root,2S16K@2759|Eukaryota,37VEU@33090|Viridiplantae,3GJH8@35493|Streptophyta
Ec32 ortholog descriptionHeat shock protein DnaJ, cysteine-rich domain
Ec32 orthologEc-08_004890.1
DescriptionDnaJ Hsp40 cysteine-rich domain superfamily protein
Cds size906
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig119.71.1prot_P-littoralis_Contig119.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig119 397812..400414 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789500.7263775-UTR-P-littoralis_Contig119:397600..3978111680789500.7263775-UTR-P-littoralis_Contig119:397600..397811Pylaiella littoralis U1_48UTRP-littoralis_Contig119 397601..397811 -
1680789500.7763288-UTR-P-littoralis_Contig119:400414..4004601680789500.7763288-UTR-P-littoralis_Contig119:400414..400460Pylaiella littoralis U1_48UTRP-littoralis_Contig119 400415..400460 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789500.7373295-CDS-P-littoralis_Contig119:397811..3979581680789500.7373295-CDS-P-littoralis_Contig119:397811..397958Pylaiella littoralis U1_48CDSP-littoralis_Contig119 397812..397958 -
1680789500.7487426-CDS-P-littoralis_Contig119:398336..3984391680789500.7487426-CDS-P-littoralis_Contig119:398336..398439Pylaiella littoralis U1_48CDSP-littoralis_Contig119 398337..398439 -
1680789500.7567382-CDS-P-littoralis_Contig119:398910..3992451680789500.7567382-CDS-P-littoralis_Contig119:398910..399245Pylaiella littoralis U1_48CDSP-littoralis_Contig119 398911..399245 -
1680789500.767687-CDS-P-littoralis_Contig119:400093..4004141680789500.767687-CDS-P-littoralis_Contig119:400093..400414Pylaiella littoralis U1_48CDSP-littoralis_Contig119 400094..400414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig119.71.1

>prot_P-littoralis_Contig119.71.1 ID=prot_P-littoralis_Contig119.71.1|Name=mRNA_P-littoralis_Contig119.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=302bp
MDVMSSPRSFLGGLLALLSYAAVGGSSSGGAERGGDGTAVMQYLAAGVGK
SAVPRSSSAAAWIEPPSLRRGGALGTTPRGFCCTMSSPVCSGGGGGGGSG
GGGAGNQGVGGEGSNRNNNRGGGIGSLDESSSSSGGSNNDGGRNNNNNNK
HNIPTGSNSDSNSAGGGDARNGSGDSAALERQFSQPAAPRGASISEGLGK
GTPSASQRLRLQQENLDMRWKMTSKRNQTICCRQCAGEGIEECRFCAGSG
MFKIGDELIVNPESGRPPPCPVCRSKGEEVCSRCNGAGRIAAWLFKSERR
K*
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mRNA from alignment at P-littoralis_Contig119:397601..400460-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig119.71.1 ID=mRNA_P-littoralis_Contig119.71.1|Name=mRNA_P-littoralis_Contig119.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2860bp|location=Sequence derived from alignment at P-littoralis_Contig119:397601..400460- (Pylaiella littoralis U1_48)
TGCACATTGGCACACACACGACTCTTGCTCAAGACGCACCACTGATATGG
ACGTGATGTCGTCTCCGCGGTCGTTCCTGGGGGGCCTTCTCGCCTTGCTT
TCTTACGCTGCGGTCGGCGGCAGCAGCAGTGGAGGGGCGGAGAGAGGAGG
CGATGGTACGGCGGTGATGCAGTATCTCGCGGCCGGAGTTGGAAAGAGCG
CGGTGCCTCGAAGTAGTTCTGCTGCTGCGTGGATTGAGCCACCTTCGCTA
CGGAGAGGCGGGGCGCTAGGCACGACACCACGGGGTTTCTGTTGTACGAT
GAGTTCACCTGTTTGCAGCGGTGGAGGTGGTGGCGGAGGAAGCGGTGGCG
GCGGAGCAGGAAACCAGGCGAGCGAACGAGAGCTACAGCGACTGTAGGCG
CCCGATGCATACGTATCTGCTCTGCCTTCCGAAAAGCCGATCTGACTTGC
CGTTGTTCTTGCTGCTGGTGCTGGTGCTGGTGCTGCTACTGCTGCTGCTG
TGTTCTGGTGCCTTCCCGCTGCTGCTGTGTCCCCTAACCGCTACAGTAGA
GCTGTGAGGCCACAGCAGTCAACGTACATTCATAAAAGTCTTTCCAGAAT
ACAGCGAAAGTTTTGCCATTCTGCCTCAGCAACGAACGGCGAGCTCTGCG
TCGCAACTCCTGTATTCTATGATACGAAGTACTCGGAGTAGAATCGTAGA
CTGCTGTCGTGTGTCCACCTGTGTATCAGACGATGAACCAAGTAGTGCGT
GTCCAGCAACAGCGGTTTTTGCGACCGTGGGCATGGCCATCAAGTCCCGA
GTCTATCGACAGACCATACCACACTGCGGAGTAGCGGCCCCTGTGTCTTG
TACGCACCTGGTCGACAACGTTAGGATTTGAGTTTACCGGTACAACAGCA
GTATTATGAGTCAGGCTGTAATTATGGAAGAGATTTTTCAAAAGGTAGGT
AGAGGTCCTCCGTAAAGGTCCTCCGCTTGCCACACAGAGACAGCTGTATG
CTTCAAACAGCGGTACTGCTGTCTGGGTCTTGTCTTCAAATTACACATCG
CTCCGATCTTTCCTCGGAATTACATCCTCAATTCAGTCCGTACTGATGAC
CGATTCACCTGTGGTGGGAGGACGCTTCCCGTGGTCACATTCTCACCGAC
CACTTATTTTTCAATGCTCTGCTGTATGATTTTGAACCATCTCCGCGGCC
CCCTGGCCCGCGCAGGGGGTTGGTGGGGAAGGGAGCAATCGCAACAATAA
CCGCGGAGGAGGCATCGGCAGCCTAGACGAAAGCAGCAGCAGTAGCGGCG
GCAGCAACAACGATGGTGGGAGAAACAACAACAACAACAACAAGCACAAC
ATCCCCACTGGCAGCAACAGCGACAGCAACAGCGCCGGCGGGGGCGACGC
CAGAAACGGCAGCGGTGACTCCGCGGCCCTGGAGAGACAGTTCTCGCAGC
CCGCGGCACCGAGAGGAGCGAGCATCAGCGAAGGCCTAGGCAAGGGAACG
CCATCGGCCAGCCAACGACTCCGATTGCAGCAGGAAAACCTTGACATGAG
GTACGATGGGGTGATCGGCAGGTGGGGGGGGGGGGTCGGAGCAGACGGGG
GGCGGGGGGCGGGTAGAGAAGCGGGAGAATATGCCGCGCACACAATCAAG
AAATGCCTTGGGTATCATGATATCTACAGGCCGCAGCAGAGGTTTTGAAA
ATACCACCAAGGGGCCCACATGGCATCCATCCCGTTTGTCAGTCATCACC
TCTTTTTCCCCAATCTAAAAAAACATGTTCGACAACTGGGTCGAAGAATG
GCCGGCGGCCCAGCAACATGGAGGGTCTTGACCGGAGACACTTCTGTACG
TGTGGGCATTCAAGTTATCATACCGTAGTTCATTTTCGGTCCAGATAGTT
GTGTTCAAGGCAGTAAACAAAATGCTCTTTTTTTATCACCTTTATCCTCC
GGCGGGGACACCGTTCCCCCCTCCCGTACGTAACCCGCATCCGCGTGGAC
ATTGACATGAACAACCCAAAGGTGGAAGATGACGAGCAAGCGAAACCAGA
CGATTTGCTGCAGGCAGTGCGCGGGGGAAGGGATAGAGGAGTGCCGGTTC
TGTGCTGGCTCTGGCATGTTCAAGGTAAAAATAGAAAGGAAACGGTGCGA
GGATCGAACAACAGCCCGGTATATGATGCGTGCTGATAATTCTTCTCTTA
AGACGAGGAACAAACGATACTCAAGAGGAATGGGTGTACTGGTCTGTAGA
TGGAGGCCAGCCACCCTTAGCACTCTCTGCCTCTGTCCAAAAATTCTCCT
CTTATACTTCGAAGTGTTTTATGTTTTCTCTCTGTCTCTCTGTCTCTCTG
TCTCCCTGTCTCTCTGTCTCTCGGTCTCTCGGTCTCTCTGTCTTTCTGTC
TCTGTGTCCCTCTTTCTCTCTAACTCCCTGTCCCTCTGTCCCTCTATCCC
TTTGTCCCTCTGTATCGTTCTCTCGCGCGTGGTGGTGGTGGGGGTCGACC
AGATCGGGGACGAGCTAATCGTCAACCCCGAGTCAGGAAGGCCTCCGCCG
TGCCCCGTGTGCAGGAGCAAGGGAGAAGAGGTCTGCTCCCGGTGCAACGG
AGCGGGCAGGATAGCCGCCTGGCTCTTCAAGAGCGAGAGAAGAAAATGAG
GAGGAGACACGCCTTCTTCAGAAGACCGGGCACTGAATGAAAGTCAGGAC
GTAATGGGGGCGTGGGGGGGAGGGTGGTCTCATTTATTACTTGCCTTGTA
GATATAATTAAGTATTTTGACTGCTCACCATCCTCATCGAGAAGGAGCGA
CGCTAGTGCGCACTCCTAACAGCTGCCGACAGAGTCAACGTCAATATTTG
GGCGCTCTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig119:397601..400460-

>mRNA_P-littoralis_Contig119.71.1 ID=mRNA_P-littoralis_Contig119.71.1|Name=mRNA_P-littoralis_Contig119.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=906bp|location=Sequence derived from alignment at P-littoralis_Contig119:397601..400460- (Pylaiella littoralis U1_48)
ATGGACGTGATGTCGTCTCCGCGGTCGTTCCTGGGGGGCCTTCTCGCCTT
GCTTTCTTACGCTGCGGTCGGCGGCAGCAGCAGTGGAGGGGCGGAGAGAG
GAGGCGATGGTACGGCGGTGATGCAGTATCTCGCGGCCGGAGTTGGAAAG
AGCGCGGTGCCTCGAAGTAGTTCTGCTGCTGCGTGGATTGAGCCACCTTC
GCTACGGAGAGGCGGGGCGCTAGGCACGACACCACGGGGTTTCTGTTGTA
CGATGAGTTCACCTGTTTGCAGCGGTGGAGGTGGTGGCGGAGGAAGCGGT
GGCGGCGGAGCAGGAAACCAGGGGGTTGGTGGGGAAGGGAGCAATCGCAA
CAATAACCGCGGAGGAGGCATCGGCAGCCTAGACGAAAGCAGCAGCAGTA
GCGGCGGCAGCAACAACGATGGTGGGAGAAACAACAACAACAACAACAAG
CACAACATCCCCACTGGCAGCAACAGCGACAGCAACAGCGCCGGCGGGGG
CGACGCCAGAAACGGCAGCGGTGACTCCGCGGCCCTGGAGAGACAGTTCT
CGCAGCCCGCGGCACCGAGAGGAGCGAGCATCAGCGAAGGCCTAGGCAAG
GGAACGCCATCGGCCAGCCAACGACTCCGATTGCAGCAGGAAAACCTTGA
CATGAGGTGGAAGATGACGAGCAAGCGAAACCAGACGATTTGCTGCAGGC
AGTGCGCGGGGGAAGGGATAGAGGAGTGCCGGTTCTGTGCTGGCTCTGGC
ATGTTCAAGATCGGGGACGAGCTAATCGTCAACCCCGAGTCAGGAAGGCC
TCCGCCGTGCCCCGTGTGCAGGAGCAAGGGAGAAGAGGTCTGCTCCCGGT
GCAACGGAGCGGGCAGGATAGCCGCCTGGCTCTTCAAGAGCGAGAGAAGA
AAATGA
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