mRNA_P-littoralis_Contig758.6.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig758.6.3
Unique NamemRNA_P-littoralis_Contig758.6.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig758.6.3 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 292 bits (748), Expect = 1.370e-93
Identity = 149/264 (56.44%), Postives = 184/264 (69.70%), Query Frame = 1
Query:    1 GRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQEQVSHVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEKYHK--------FPLIPTYFVARLFLFQWAILIPPTKWPTTDMETRWSRALESVRKDVECFFGILKGRFRILKLGILFQNLEDIDNMFFTCCVLHNMLHAFD 768
            GRR IPV+LKVLA L IL RGN F D+  MS +S  T   +FH+F + FARE Y  H+ LPT G+ Q++V   M  YD LGF+GA GSTDVTHI W  CP++  + YTGKEG+ T+A+Q  VDHT R+LA T GF GS NDK+IIRYD AVTKIR+DPIY+EK           + L   Y +      +W  LIPP+K+P    +  +S+ LESVRKDVECFFGI+KGRFRILKL I +   EDIDN+FFTCC+LHNMLH++D
Sbjct:  149 GRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPT-GDYQKKV---MTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYD 408          
BLAST of mRNA_P-littoralis_Contig758.6.3 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 1.330e-91
Identity = 147/264 (55.68%), Postives = 184/264 (69.70%), Query Frame = 1
Query:    1 GRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQEQVSHVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEKYHK--------FPLIPTYFVARLFLFQWAILIPPTKWPTTDMETRWSRALESVRKDVECFFGILKGRFRILKLGILFQNLEDIDNMFFTCCVLHNMLHAFD 768
            GR+ +PVELKVLA L IL RGN F D+  MS +S  T+ ++FH+F K FA E Y  +V+LPT GED  +V   M+ YD +GF GA+GSTDVTHI W  CP++  ++YTGKEG  T+AFQ  VDH+GR+LA T+GF G+ NDKTIIRYD AVT+IR DP+YTE+ +K        F     Y +      +W  LIPP+K P    +  +S+ LES RKDVEC+FGILKGRFRI KL I F   E IDN+FFTCC+LHNMLH+FD
Sbjct:  165 GRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPT-GEDLRKV---MEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFD 424          
BLAST of mRNA_P-littoralis_Contig758.6.3 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 1.810e-87
Identity = 141/259 (54.44%), Postives = 177/259 (68.34%), Query Frame = 1
Query:   16 PVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQEQVSHVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEKYHK--------FPLIPTYFVARLFLFQWAILIPPTKWPTTDMETRWSRALESVRKDVECFFGILKGRFRILKLGILFQNLEDIDNMFFTCCVLHNMLHAFD 768
            P   +VLA L IL RGN F D+  MS +S  T+ ++FH+F K FA E Y  +V+LPT GED  +V   M+ YD +GF GA+GSTDVTHI W  CP++  ++YTGKEG  T+AFQ  VDH+GR+LA T+GF G+ NDKTIIRYD AVT+IR DP+YTE+ +K        F     Y +      +W  LIPP+K P    +  +S+ LES RKDVEC+FGILKGRFRI KL I F   E IDN+FFTCC+LHNMLH+FD
Sbjct:   79 PPHTQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPT-GEDLRKV---MEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFD 333          
BLAST of mRNA_P-littoralis_Contig758.6.3 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 1.170e-84
Identity = 138/263 (52.47%), Postives = 176/263 (66.92%), Query Frame = 1
Query:    4 RRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQEQVSHVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEK----YHKFPLIPT----YFVARLFLFQWAILIPPTKWPTTDMETRWSRALESVRKDVECFFGILKGRFRILKLGILFQNLEDIDNMFFTCCVLHNMLHAFD 768
            R+  PVE KVLA L ILGRGN F  + Q+S MS  T+Q  FHKF K FARE Y  H++LP+  E   ++ HVMK YD LGF+GA+GS DVTHI W+ CP++  + YTGKEG  T+ +Q  V+H GR +A T+GF  S NDKT + +DA V KIR D  YTEK    Y++     T    Y +      +W IL+ PTK+P ++ +  +S+ LESVRKDVECFFGILKG FRI K+ + +   E IDN+FFTCC+LHNMLH FD
Sbjct:   90 RQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPS--EQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFD 350          
BLAST of mRNA_P-littoralis_Contig758.6.3 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 2.360e-84
Identity = 145/287 (50.52%), Postives = 179/287 (62.37%), Query Frame = 1
Query:   16 PVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQEQVSHVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYT--------------------------------EKYHKFPLIPT----YFVARLFLFQWAILIPPTKWPTTDMETRWSRALESVRKDVECFFGILKGRFRILKLGILFQNLEDIDNMFFTCCVLHNMLHAFD 768
            PVE KVLA L ILGRGN F  + QMS MS  T+Q  FHKF + FARE Y   +HLPT  E+  ++ HVMK YD LGFTGA+GS DVTHI W+ CP++  + YTGKEGF TIA+Q  VDH GR +A T+GF GS NDKTI+ +D AV KI  D  YT                                + Y++     T    Y +      +W ILI P+K+P ++ +  +S+ LESVRKDVECFFGILKGRFRILKL + +Q+ E IDN+FFTC +LHNMLH FD
Sbjct:   81 PVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPT--EESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFD 365          
BLAST of mRNA_P-littoralis_Contig758.6.3 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 3.840e-81
Identity = 137/264 (51.89%), Postives = 174/264 (65.91%), Query Frame = 1
Query:    1 GRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQEQVSHVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEK---YHKFP-----LIPTYFVARLFLFQWAILIPPTKWPTTDMETRWSRALESVRKDVECFFGILKGRFRILKLGILFQNLEDIDNMFFTCCVLHNMLHAFD 768
            GRRC PVE KVLA L ILGRGN F  +  +S MS  T+Q  FH+F + FA E Y  H+ LP+  E+  ++  VM  Y+ LGF GA+GSTDVTHI W+ CP++  + YTGKEG  T+ +Q  V+H GR+LA T+GF GS NDKTII  D AV +IR D  Y EK    HK       L   Y +      +W +LI P+K+P ++ +  +S+ LESVRKDVECFFGILK RFRILKL + +Q  E +D +FFTCC+LHNMLH  D
Sbjct:  118 GRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPS--EENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHD 379          
BLAST of mRNA_P-littoralis_Contig758.6.3 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 1.790e-77
Identity = 137/268 (51.12%), Postives = 171/268 (63.81%), Query Frame = 1
Query:   10 CIPV-------ELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQEQVSHVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEK----YHKFPLIPT----YFVARLFLFQWAILIPPTKWPTTDMETRWSRALESVRKDVECFFGILKGRFRILKLGILFQNLEDIDNMFFTCCVLHNMLHAFD 768
            CIPV        L+VLA L ILG+GN F  + QMS MS  T+Q  FHKF +LFARE Y  H+HLP   E+  ++ HVMK YD LG                 CP++  + YTGK+ F TIA+Q  VDH  R +A T+GF GS NDKTI+ +DAAV KIR D  YTEK    Y++     T    YF+      +W ILI P+K+P ++ +  +S+ LESVRKDVECFFGILKGRFRILKL + +Q+ E IDN+FFTCC+LHNMLH FD
Sbjct:    7 CIPVCTCVGDLVLQVLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPA--EESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFD 255          
BLAST of mRNA_P-littoralis_Contig758.6.3 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 3.210e-71
Identity = 130/253 (51.38%), Postives = 160/253 (63.24%), Query Frame = 1
Query:    4 RRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQEQVSHVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEKYHKFPLIPTYFVARLFLFQWAILIPPTKWPTTDMETRWSRALESVRKDVECFFGILKGRFRILKLGILFQNLEDIDNMFFTCCVLHNMLHA 762
            R  IP+ELKVL      G+GN F+D+ Q+S MSES  Q  FHKF +  A E +  H++LPT       +  VM  +  LG TGA GSTDVTHI    CP +  + +TGKEGF TIA++  VDH GR LA T GFAG  NDKT IRYD+ V KIR +  YTE+ +K   +      R   F    LI    +  ++ +T +SR LESVRKDVECFFGILKGRFRILKL + +   E IDN+FFTCC+LHNMLH 
Sbjct:  130 REGIPLELKVL------GKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTG----TYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCF----LIVDNGYYESNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHT 368          
BLAST of mRNA_P-littoralis_Contig758.6.3 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 1.450e-70
Identity = 115/211 (54.50%), Postives = 146/211 (69.19%), Query Frame = 1
Query:  160 YHSHVHLPTAGEDQEQVSHVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIRKDPIYTEK----YHKFPLIPT----YFVARLFLFQWAILIPPTKWPTTDMETRWSRALESVRKDVECFFGILKGRFRILKLGILFQNLEDIDNMFFTCCVLHNMLHAFD 768
            Y  H+HLPT  E+  ++  V++ YD LGFTGA+GS DVTHI W+ CP++  + YTGKEGF TI +Q  VDH GR +A T+GF GS NDKT + +DAAV KIR D  YTEK    Y++     T    Y +      +W ILI P+K+P ++ +  +S+ LESVRKDVECFFGILKGR RIL L + FQ+ E IDN+FFTCC+LHNMLH FD
Sbjct:    2 YDEHIHLPT--EESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFD 210          
BLAST of mRNA_P-littoralis_Contig758.6.3 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 1.950e-68
Identity = 118/262 (45.04%), Postives = 165/262 (62.98%), Query Frame = 1
Query:    4 RRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFAREFYHSHVHLPTAGEDQEQVSHVMKHYDHLGFTGAIGSTDVTHIKWAACPHSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAAVTKIR----KDPIYTEKYHKFPLIPT---YFVARLFLFQWAILIPPTKWPTTDMETRWSRALESVRKDVECFFGILKGRFRILKLGILFQNLEDIDNMFFTCCVLHNMLHAFD 768
            RRCIPVE KVLA L ILGRGN+F+D+++++ M E+T+ + FHKF + FA E +   V +P     ++++  +MK YD +G +GA+GS D THI+W  CP+S    + GKEG+AT+ F   V H  R+L+ T+GF G+ NDKTII++D     +R    KD  YT K      I     + +       W  L  P + P+   E+ + R LESVRKD EC FG++KGRFRI K+  L++  E IDN+FFTC +LHNML A+D
Sbjct:  126 RRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFACEIFPVWVRMPN----EDELKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSHIGKEGYATLVFNVAVSHDMRVLSCTRGFPGAQNDKTIIKFDKFAMAVRNGWYKDVEYTLKGEDGADIKEKGPWLIVDGGYHNWKQLQSPIRAPSNKAESGFKRQLESVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNIFFTCIILHNMLLAYD 383          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig758.6.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAU4_9PHAE1.370e-9356.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.330e-9155.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE1.810e-8754.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE1.170e-8452.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE2.360e-8450.52DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JBE2_9PHAE3.840e-8151.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE1.790e-7751.12DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KSI7_9PHAE3.210e-7151.38DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
D7FSK2_ECTSI1.450e-7054.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8I3_9PHAE1.950e-6845.04Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig758contigP-littoralis_Contig758:9235..11848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size769
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.37e-71
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size768
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791563.5865881-CDS-P-littoralis_Contig758:9234..95131680791563.5865881-CDS-P-littoralis_Contig758:9234..9513Pylaiella littoralis U1_48CDSP-littoralis_Contig758 9235..9513 -
1680791563.6032784-CDS-P-littoralis_Contig758:9824..101021680791563.6032784-CDS-P-littoralis_Contig758:9824..10102Pylaiella littoralis U1_48CDSP-littoralis_Contig758 9825..10102 -
1680791563.6139042-CDS-P-littoralis_Contig758:10574..107551680791563.6139042-CDS-P-littoralis_Contig758:10574..10755Pylaiella littoralis U1_48CDSP-littoralis_Contig758 10575..10755 -
1680791563.6270344-CDS-P-littoralis_Contig758:11818..118481680791563.6270344-CDS-P-littoralis_Contig758:11818..11848Pylaiella littoralis U1_48CDSP-littoralis_Contig758 11819..11848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig758.6.3prot_P-littoralis_Contig758.6.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig758 9235..11848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig758.6.3

>prot_P-littoralis_Contig758.6.3 ID=prot_P-littoralis_Contig758.6.3|Name=mRNA_P-littoralis_Contig758.6.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=256bp
GRRCIPVELKVLASLHILGRGNFFEDMTQMSHMSESTIQNSFHKFNKLFA
REFYHSHVHLPTAGEDQEQVSHVMKHYDHLGFTGAIGSTDVTHIKWAACP
HSWEKLYTGKEGFATIAFQAIVDHTGRLLAATKGFAGSMNDKTIIRYDAA
VTKIRKDPIYTEKYHKFPLIPTYFVARLFLFQWAILIPPTKWPTTDMETR
WSRALESVRKDVECFFGILKGRFRILKLGILFQNLEDIDNMFFTCCVLHN
MLHAFD
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mRNA from alignment at P-littoralis_Contig758:9235..11848-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig758.6.3 ID=mRNA_P-littoralis_Contig758.6.3|Name=mRNA_P-littoralis_Contig758.6.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=2614bp|location=Sequence derived from alignment at P-littoralis_Contig758:9235..11848- (Pylaiella littoralis U1_48)
GGGCGCAGGTGCATCCCAGTGGAGCTGAAGGTGACTCTCTTGCCCCATGC TATATCATACCTCCTTCTTATCCTACCGTAAAAATTATCGCAGTAGCAGC AGCAGTGACACATACTAACAGCCGTGTCCCAATATGATCTTACTTGTTTG TACTGCTGTACCGAATACGCATCCACACTATTGGTACATATCATATCATG CATGTGATGAAGATACACTGCTGTTCTTCGAGTATACCGTACCTGGTATC AATTAACGTATGATATGTACTTCTGGACAGCAGTTAATTTGCACAGCAGT ACTGTAATGTCCTGTTGTTTCCTCTACAAAAGGAGCAAACATACAGTACT GTAATGTCCTGTTGTTTCCTCTACAAAAGGAGCAAACATACAGCAGTAGT TGGTTCTGTGATGAGTCTGTGGCAGATAGACTCCGAGTACAAATAATGTG ATCCATGATTGCCCTAAGTTATCGAACCGCGTTCGAGCACGAGCTCTACC TTGCAGCAGCCTATTTTATCACGAGTCCACCATTGGGCAACTATTTTATC GCGAGTCCACCAGAGGGCACCGAGTTTGGTGTTTCTGTGGGAAAATGGAG CCCCTGCGTTTCTCGCTCGCGGCGAGGCGGCAACTCGCCATCCATATGTC GCTCGTCAAGATGTAAAGCAGTAGTCAAACGATGGTGTACTGTCACTGCA TGGCGAATGCATGAAACACAAGGTCAGGTTCCTTCTGTGTTACGGCTGCC GGTGCTGCTGCGCTCCGCATTCATATTTTGGCATATTGAATCAACAAGAC TTTAACTTTGTACATCAACGGCAAAACGTGCACTCCACAATAGCTGAATG TCCCCCGAAACATATGTGATAATCCCGTGATTCGGCGAGTCGATGCGGCA CATACGCCTCGTTTAGGTGCGAAACCAGCTGTAATAACCAGCGAAGCAGG AGACGGCAAATCAAAATGTTCGTCTCATGCCAGTGTTGTACATCCCGACA TTTCAAAAGTGATTTTCCCGTAAAAAATTATGTTCCTCTCACCGGACCGC GACTCGTCATGTTTTGTTTTCTGTTGTTGATTTCGGCTTCCAGGTCCTGG CATCGCTGCACATTCTCGGGAGGGGCAACTTCTTCGAGGACATGACCCAG ATGTCTCACATGAGCGAGTCGACGATACAGAACTCCTTCCACAAGTTCAA CAAGCTCTTCGCGAGAGAGTTCTACCACAGCCACGTGCATCTGCCCACCG CCGGAGAGGACCAAGAACAGGTGACTCATCGCCTTATACGATTACTGCTG GGAAAGCCTGTTTCTTACTCTCCAGTATGTAGCACGATGCCCCACCCTCG GTACATGTTTCCACTTAGGGTTTGCACTTGTGTCGTGTCCCCCCTGTGAA GGTATCGAAGGTATCGTTGTCTTTGTACGTTTGGTTGGACCATCTTGTAT AAGTATCGGGTCAGGGTTAGGTCGAGTTCCCACACGCCGCTGTTGCGGCA CCGTTCAAAATACGTGCGTATGGCATTGAAGTTACACATTTTCCTCCAGC AGTATCGTTATGTTTTCGGTTTCGTGATGCAGTATCTTAGGTTTTCGTTT TCGTGGTTGATCGTGCCAATTAATCATTGTTAAGCATTACCTGTGCGTAC AACACCTTTGCGAAGGAGGCACCATTACTCACGAAAAGTCGCACATGCAT TGCCCCCCATGATAACTCGGAATGTGACCGCACTATATTCCAAAACGTCA CGTGATGAAGCACTACGATCACCTGGGATTCACTGGAGCGATCGGATCGA CCGATGTCACCCACATCAAGTGGGCGGCTTGCCCGCATTCGTGGGAGAAG CTGTACACGGGGAAGGAGGGCTTCGCGACCATCGCCTTCCAGGCGATCGT GGATCACACTGGGCGTCTCTTGGCCGCGACGAAGGGCTTTGCCGGTTCGA TGAACGACAAGACCATCATCCGGTACGATGCGGCGGTCACCAAAATCCGC AAAGATCCGATCTACACGGAGAAGGTGTACACTCTCTTCGACAAGGACGG CACGCCCTTCCAGCGTAAGGGCAACTACAGTATCGTCGACAACGGGTACA ATAAGGTGAGATTGCTGTATCTGCGGCGTGATGTTTCGGTTTTCGTTTCT CTGTGTTGGTTGCTGGCATTTTCTCTCGAACAGAGGCTGGAACGATATGT TTGAATGCTTTGTTGGAGAGGTAAAACAAAAGTATCTGTCTCCTGAGTTG TCAGGAGGCTCAATTATTCCCACGTACGTAAGCATCCATGATTGATTGAT GTCTTTGTGTCCAAGGTGTGTTTGGACTTGCCAAGTACCACAAGTTCCCC TTGATCCCGACTTATTTTGTCGCGCGTCTCTTCCTGTTTCAGTGGGCGAT CCTTATTCCCCCCACCAAGTGGCCAACCACCGACATGGAGACCCGGTGGA GCAGAGCGCTGGAGAGCGTTCGCAAAGACGTCGAGTGTTTTTTCGGAATC TTAAAGGGCCGTTTTCGAATCTTGAAGCTAGGGATCCTTTTCCAAAACTT GGAAGACATCGACAACATGTTCTTCACGTGCTGTGTCTTGCACAACATGT TGCATGCGTTCGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig758:9235..11848-

>mRNA_P-littoralis_Contig758.6.3 ID=mRNA_P-littoralis_Contig758.6.3|Name=mRNA_P-littoralis_Contig758.6.3|organism=Pylaiella littoralis U1_48|type=CDS|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig758:9235..11848- (Pylaiella littoralis U1_48)
GGGCGCAGGTGCATCCCAGTGGAGCTGAAGGTCCTGGCATCGCTGCACAT
TCTCGGGAGGGGCAACTTCTTCGAGGACATGACCCAGATGTCTCACATGA
GCGAGTCGACGATACAGAACTCCTTCCACAAGTTCAACAAGCTCTTCGCG
AGAGAGTTCTACCACAGCCACGTGCATCTGCCCACCGCCGGAGAGGACCA
AGAACAGGTGAGTCACGTGATGAAGCACTACGATCACCTGGGATTCACTG
GAGCGATCGGATCGACCGATGTCACCCACATCAAGTGGGCGGCTTGCCCG
CATTCGTGGGAGAAGCTGTACACGGGGAAGGAGGGCTTCGCGACCATCGC
CTTCCAGGCGATCGTGGATCACACTGGGCGTCTCTTGGCCGCGACGAAGG
GCTTTGCCGGTTCGATGAACGACAAGACCATCATCCGGTACGATGCGGCG
GTCACCAAAATCCGCAAAGATCCGATCTACACGGAGAAGTACCACAAGTT
CCCCTTGATCCCGACTTATTTTGTCGCGCGTCTCTTCCTGTTTCAGTGGG
CGATCCTTATTCCCCCCACCAAGTGGCCAACCACCGACATGGAGACCCGG
TGGAGCAGAGCGCTGGAGAGCGTTCGCAAAGACGTCGAGTGTTTTTTCGG
AATCTTAAAGGGCCGTTTTCGAATCTTGAAGCTAGGGATCCTTTTCCAAA
ACTTGGAAGACATCGACAACATGTTCTTCACGTGCTGTGTCTTGCACAAC
ATGTTGCATGCGTTCGAT
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