mRNA_P-littoralis_Contig758.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig758.1.1
Unique NamemRNA_P-littoralis_Contig758.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig758.1.1 vs. uniprot
Match: A0A6H5KUY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY0_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.600e-14
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 DRMRKTIWKNKANLGDAQLFQFVPAYYAVMSVKESGTTFDDGGKGAQSVRRYEDFTAMGFLKWLDE 198
            +RM+ T W +K N+G A LFQF+P +YA MSVKESG  + +  + A++V+ Y+ F    FL+WL E
Sbjct:   19 NRMKGTNWGDKPNVGHASLFQFLPGFYAGMSVKESGKCYSESDRNAEAVKVYKSFAVPAFLRWLVE 84
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig758.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUY0_9PHAE4.600e-1446.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig758contigP-littoralis_Contig758:1902..2108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size209
Hectar predicted targeting categoryother localisation
Exons1
Cds size201
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791563.5366738-UTR-P-littoralis_Contig758:1901..19071680791563.5366738-UTR-P-littoralis_Contig758:1901..1907Pylaiella littoralis U1_48UTRP-littoralis_Contig758 1902..1907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791563.5512097-CDS-P-littoralis_Contig758:1907..21081680791563.5512097-CDS-P-littoralis_Contig758:1907..2108Pylaiella littoralis U1_48CDSP-littoralis_Contig758 1908..2108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig758.1.1prot_P-littoralis_Contig758.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig758 1908..2108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig758.1.1

>prot_P-littoralis_Contig758.1.1 ID=prot_P-littoralis_Contig758.1.1|Name=mRNA_P-littoralis_Contig758.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
MRKTIWKNKANLGDAQLFQFVPAYYAVMSVKESGTTFDDGGKGAQSVRRY
EDFTAMGFLKWLDETAN
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mRNA from alignment at P-littoralis_Contig758:1902..2108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig758.1.1 ID=mRNA_P-littoralis_Contig758.1.1|Name=mRNA_P-littoralis_Contig758.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig758:1902..2108+ (Pylaiella littoralis U1_48)
GACCGAATGCGAAAGACGATCTGGAAAAACAAGGCCAACCTTGGGGACGC
TCAGCTCTTCCAGTTCGTCCCGGCGTACTATGCTGTAATGAGCGTAAAGG
AGAGCGGCACCACCTTCGATGACGGAGGGAAGGGCGCGCAATCGGTCCGA
CGTTATGAAGATTTCACGGCCATGGGCTTCCTCAAGTGGTTGGACGAGAC
GGCCAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig758:1902..2108+

>mRNA_P-littoralis_Contig758.1.1 ID=mRNA_P-littoralis_Contig758.1.1|Name=mRNA_P-littoralis_Contig758.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig758:1902..2108+ (Pylaiella littoralis U1_48)
ATGCGAAAGACGATCTGGAAAAACAAGGCCAACCTTGGGGACGCTCAGCT
CTTCCAGTTCGTCCCGGCGTACTATGCTGTAATGAGCGTAAAGGAGAGCG
GCACCACCTTCGATGACGGAGGGAAGGGCGCGCAATCGGTCCGACGTTAT
GAAGATTTCACGGCCATGGGCTTCCTCAAGTGGTTGGACGAGACGGCCAA
C
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