mRNA_P-littoralis_Contig757.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig757.19.1
Unique NamemRNA_P-littoralis_Contig757.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig757.19.1 vs. uniprot
Match: A0A6H5K7B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B4_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.820e-36
Identity = 79/133 (59.40%), Postives = 96/133 (72.18%), Query Frame = 1 
Query:    7 DVKKRCTTRQLVVLKNAAGIQRGTINSRKEDLLDYLDEYVGGFRCDSGEGAGPNVTDIGLAGGRGXXXXXXNLGESNTSTGGGEMASASCDSTRAEESVEEGREHDDFLSRPIVRDLSLSILDGAGASTGGDS 405
            +++ RCTT+QLVVL  AA I +GT+NSR+EDLLD+L+ +V GFR +   GAGPNVT  GLA    XXXXX N GE NT TG GEMASA  D T  E   ++G +HDDFLSRPI  D+SLS L+GAG S+G  S
Sbjct:   89 EIRDRCTTKQLVVLMKAAEIPKGTVNSREEDLLDHLETFVCGFRQEPVGGAGPNVTGTGLAXXXXXXXXXENAGEGNTLTGSGEMASAGGDLTTEEVPTQDGMDHDDFLSRPIAMDISLSALEGAGVSSGSGS 221
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BLAST of mRNA_P-littoralis_Contig757.19.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.640e-32
Identity = 79/135 (58.52%), Postives = 94/135 (69.63%), Query Frame = 1 
Query:    1 RDDVKKRCTTRQLVVLKNAAGIQRGTINSRKEDLLDYLDEYVGGFRCDSGEGAGPNVTDIGLAGGRGXXXXXXNLGESNTSTGGGEMASASCDSTRAEESVEEGREHDDFLSRPIVRDLSLSILDGAGASTGGDS 405
            R +++ RCTT+QLVVL  AA I +GT+NSRK DLLDYL+ +V GFR +   GAGPNVT  GL     XXXXXX  GE NT TG GEMASA  D T  E   ++G +HDDFLSRPI  D S S+L+GAG S+G  S
Sbjct:  423 RAEIRDRCTTKQLVVLTKAAEIPKGTVNSRKADLLDYLETFVCGFRQEPVGGAGPNVTGTGLXXXXXXXXXXXXAGEGNTLTGSGEMASAGGDFTTEEVPTQDGMDHDDFLSRPIAMDFSRSVLEGAGVSSGSGS 557
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BLAST of mRNA_P-littoralis_Contig757.19.1 vs. uniprot
Match: A0A6H5K5B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.410e-12
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 RDDVKKRCTTRQLVVLKNAAGIQRGTINSRKEDLLDYLDEYVGGFRCDSGEGAGPNVTDIGLA 189
            R D+  RCT RQL++L   AGI++GT+NSR++DLLDYL  YVGGF  +S EGAGP+ T  G A
Sbjct:  252 RVDISDRCTVRQLLLLVKDAGIKKGTMNSRQDDLLDYLAAYVGGFGQESVEGAGPSATGSGPA 314
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig757.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K7B4_9PHAE1.820e-3659.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K201_9PHAE2.640e-3258.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5B1_9PHAE2.410e-1258.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig757contigP-littoralis_Contig757:46496..47093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size598
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791562.5056267-UTR-P-littoralis_Contig757:46495..467531680791562.5056267-UTR-P-littoralis_Contig757:46495..46753Pylaiella littoralis U1_48UTRP-littoralis_Contig757 46496..46753 +
1680791562.533961-UTR-P-littoralis_Contig757:46903..470931680791562.533961-UTR-P-littoralis_Contig757:46903..47093Pylaiella littoralis U1_48UTRP-littoralis_Contig757 46904..47093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791562.520563-CDS-P-littoralis_Contig757:46753..469031680791562.520563-CDS-P-littoralis_Contig757:46753..46903Pylaiella littoralis U1_48CDSP-littoralis_Contig757 46754..46903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig757.19.1prot_P-littoralis_Contig757.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig757 46754..46903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig757.19.1

>prot_P-littoralis_Contig757.19.1 ID=prot_P-littoralis_Contig757.19.1|Name=mRNA_P-littoralis_Contig757.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=50bp
MASASCDSTRAEESVEEGREHDDFLSRPIVRDLSLSILDGAGASTGGDS*
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mRNA from alignment at P-littoralis_Contig757:46496..47093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig757.19.1 ID=mRNA_P-littoralis_Contig757.19.1|Name=mRNA_P-littoralis_Contig757.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=598bp|location=Sequence derived from alignment at P-littoralis_Contig757:46496..47093+ (Pylaiella littoralis U1_48)
AGGGACGACGTTAAGAAAAGATGCACCACAAGACAACTTGTCGTGCTCAA
AAATGCCGCGGGGATTCAGAGGGGCACTATCAACTCGAGGAAGGAGGATC
TACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATGTGACTCGGGC
GAAGGGGCAGGCCCCAACGTGACCGACATCGGGCTAGCAGGGGGTCGTGG
CGGGGGGCGTGGTGGTGAGAACCTGGGTGAGAGCAACACCTCGACAGGTG
GTGGTGAGATGGCCTCTGCCAGTTGTGATTCGACGAGGGCGGAAGAATCT
GTGGAGGAGGGGAGGGAACACGACGATTTTCTATCCCGACCGATTGTAAG
GGATTTGTCGCTGTCGATTTTGGACGGGGCGGGTGCGTCTACCGGGGGTG
ATTCGTGAAGTAACTACCGAGGCAGGAGGTGAAGGTTGGGATGTCGGTGG
TATGTTTTTTTTGTTTTGCTTTGTCATAATGTAATTGATGTTCGCGGATC
TGAGCTGCCAATCTGGTTTTGCCTTGCCAGTGTTATGTGCGTGTCAAAGT
TGGCGTCTGGTCTGGTGGCGGTTTACCCTCGTCTCGCCACAACGACCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig757:46496..47093+

>mRNA_P-littoralis_Contig757.19.1 ID=mRNA_P-littoralis_Contig757.19.1|Name=mRNA_P-littoralis_Contig757.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=150bp|location=Sequence derived from alignment at P-littoralis_Contig757:46496..47093+ (Pylaiella littoralis U1_48)
ATGGCCTCTGCCAGTTGTGATTCGACGAGGGCGGAAGAATCTGTGGAGGA
GGGGAGGGAACACGACGATTTTCTATCCCGACCGATTGTAAGGGATTTGT
CGCTGTCGATTTTGGACGGGGCGGGTGCGTCTACCGGGGGTGATTCGTGA
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