mRNA_P-littoralis_Contig757.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig757.17.1
Unique NamemRNA_P-littoralis_Contig757.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig757.17.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.120e-12
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 3 
Query:  228 VNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGPLWAEVKGLPPTTHL 401
             N+ A+ +   +  GL GDT+R V+ V +RGDALFNGRLDWLG LWA VKGL PT  L
Sbjct:  101 ANDAARGMRTLLVGGLHGDTNRVVAAVHKRGDALFNGRLDWLGELWAVVKGLQPTADL 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig757.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE1.120e-1258.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig757contigP-littoralis_Contig757:43099..45081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size402
Hectar predicted targeting categoryother localisation
Exons3
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791562.3252423-CDS-P-littoralis_Contig757:43098..432101680791562.3252423-CDS-P-littoralis_Contig757:43098..43210Pylaiella littoralis U1_48CDSP-littoralis_Contig757 43099..43210 +
1680791562.3354445-CDS-P-littoralis_Contig757:44254..443571680791562.3354445-CDS-P-littoralis_Contig757:44254..44357Pylaiella littoralis U1_48CDSP-littoralis_Contig757 44255..44357 +
1680791562.3465838-CDS-P-littoralis_Contig757:44894..450811680791562.3465838-CDS-P-littoralis_Contig757:44894..45081Pylaiella littoralis U1_48CDSP-littoralis_Contig757 44895..45081 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig757.17.1prot_P-littoralis_Contig757.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig757 43099..45081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig757.17.1

>prot_P-littoralis_Contig757.17.1 ID=prot_P-littoralis_Contig757.17.1|Name=mRNA_P-littoralis_Contig757.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
HATKHATTATPTSALPAVRATISTSETLCQGRVLFFHGGRRGEPGGGRGG
GGGGGGQRWRRKPAQEAACVSKMLARSTSWPRTLRTISRTVFAGTQIVPC
RWCLREGTPSSTGVSTGSVRFGRRSKVFLLQRT*
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mRNA from alignment at P-littoralis_Contig757:43099..45081+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig757.17.1 ID=mRNA_P-littoralis_Contig757.17.1|Name=mRNA_P-littoralis_Contig757.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1983bp|location=Sequence derived from alignment at P-littoralis_Contig757:43099..45081+ (Pylaiella littoralis U1_48)
CACGCGACCAAGCACGCGACGACCGCGACGCCAACTTCTGCTCTACCTGC
TGTACGCGCTACCATCAGTACGAGTGAGACTCTGTGCCAGGGCAGAGTTT
TGTTTTTTCACGGTGAGTCTTGTTGCCATGACCTCCTTAGGGCAGCACCC
CGGGGTAGTTCCCTACCGAATTCCCACTACCCTCGACGTCGCAGGCACTA
GCGTCTCGCCCACCCAGGAGGTTTTTCTCATACACCCGGTGCCGTCAGTA
CATGTCTCAGGCTCTCTTGGATAGAAGTCCGTTTGGAAATCGGACTTGAA
TAGGCAGACTTCTCTCCAAAATGCGGACAAGAATCTCACCGTGTCGAGAG
GACCCTGAGCGTTCGCCAGAAGCAGGTTGAAAAACAATCGATAACGAAGT
ACTGCTGTAGAGGAGAAAAATCAACGCATGGCGTGGAATCAACCCTCCAC
CACCACCGCCCACCGCGCGCTACGCGAGAGCACGCCTAGTTTCAGCGGGT
GAATAGAACAAACTTAGGGTTGCCGAAGATTTCTCGGGTTCAACCTTGGT
GCTGTGTTGTGTATCGGAGACAACTACTCCAGTATTTTTTTGTAGTAAAA
CCGGACTCCAATTTCGCCGCCTTAGCTACCGTCGCTGCTTCTCAGTGCTG
CTGGCCGTGTTCCCTATCTATCTATGGTTTGGCGGCTGCCTTCCTCTTGA
CGTTGGAATTAACATAGTTGTTCGACCTCCAGTACGAAAAAGAAGGGCAG
AATCATCCCGCCTTCACACGAATAAATTTGTTGCTGTCTGTTTCCCCACA
GAGGTGCGGCATGGAAGTAACTGCGCTGCGGGATGCACTCGGACAACATG
ACGAAGAACATGACAGCGGTGTATCTCCTTCCTCAACCCGTATGTTTAGG
TTGTTCGGGGGAAGGTTTTGTTTCGAAAATGTGGGTGTAAAAATTATTGA
GTTGCAGTCCCCGAGACAATGCTATGTAAGCCAAGGCATGGCCCAACTTG
GCGGCCTGACTTTTCGCGTGGTCTCGCCGCACCCCGCCTCTCGCCACCTC
TCGCTGCCTAGCAGCTTTATTTTTTGGCCATCGATACCCTTGATCATTAC
TGCCATTGCGCCGTTCTGAACGCTTTTTGCATGATGTCTCGCACACTTGA
TGGCAGGCGGCCGGCGAGGAGAACCAGGCGGCGGACGAGGAGGAGGAGGA
GGAGGAGGAGGACAGCGATGGCGCAGAAAACCAGCGCAAGAAGCAGCCTG
TGTCAGCAAGTATGTTGAAGCCTGGGAGGTTAGAGTCGAATGAGGACGGG
TGACAAAAAAACAGCGTGTTCTTATTTCCTTCTTTCGTTATCTAGGAACC
ATCGCTTTTCTCTCTTTGCTTTCTCCCACGTCCCCCCGCAAACCTGAACT
CGCCTGACGAGTGTCTTTGAGTCTCACGCTCTCCTCGTTGCGCTTGCGAA
TGCTGATTGGAGCAAGGTCGAGGAGAGGAGTCTGAAGAAGATAACGATTG
CATGAGCGTGCAGGATTCGGACGATGAGGAAGAGACCGACGAGGCGGCTG
TCCAATACATGCGTGGTGCTTTCGAGGATGTTCCGGTGAGAATGGCAGTG
CATATTGTTGCCTGCTCGCACATTTCAGACATCATGCAGCCAATGTTTCC
TTTTGGTGTGACCTCGCATAGTCAGACTGGCACTTGTTGTTTCACTTGTG
TTTCATCACCATCGCAACGAGAGCCTGTTTGGGATGATATTTTCAATCGC
TTTTATCTTTTGTTTGTCCGCGGCCGTGTGGTTGACGATGAAGCAGAATG
CTGGCAAGGTCAACGAGCTGGCCCAGAACATTGCGAACCATATCGAGGAC
GGTCTTCGCGGGGACACAGATCGTGCCGTGTCGGTGGTGCTTGAGAGAGG
GGACGCCCTCTTCAACGGGCGTCTCGACTGGCTCGGTCCGCTTTGGGCGG
AGGTCAAAGGTCTTCCTCCTACAACGCACTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig757:43099..45081+

>mRNA_P-littoralis_Contig757.17.1 ID=mRNA_P-littoralis_Contig757.17.1|Name=mRNA_P-littoralis_Contig757.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig757:43099..45081+ (Pylaiella littoralis U1_48)
CACGCGACCAAGCACGCGACGACCGCGACGCCAACTTCTGCTCTACCTGC
TGTACGCGCTACCATCAGTACGAGTGAGACTCTGTGCCAGGGCAGAGTTT
TGTTTTTTCACGGCGGCCGGCGAGGAGAACCAGGCGGCGGACGAGGAGGA
GGAGGAGGAGGAGGAGGACAGCGATGGCGCAGAAAACCAGCGCAAGAAGC
AGCCTGTGTCAGCAAAATGCTGGCAAGGTCAACGAGCTGGCCCAGAACAT
TGCGAACCATATCGAGGACGGTCTTCGCGGGGACACAGATCGTGCCGTGT
CGGTGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGGCGTCTCGACTGG
CTCGGTCCGCTTTGGGCGGAGGTCAAAGGTCTTCCTCCTACAACGCACTT
GA
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