mRNA_P-littoralis_Contig757.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig757.16.1
Unique NamemRNA_P-littoralis_Contig757.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig757.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig757contigP-littoralis_Contig757:25316..26153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size497
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791562.2602532-UTR-P-littoralis_Contig757:25315..254611680791562.2602532-UTR-P-littoralis_Contig757:25315..25461Pylaiella littoralis U1_48UTRP-littoralis_Contig757 25316..25461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791562.2713795-CDS-P-littoralis_Contig757:25461..257281680791562.2713795-CDS-P-littoralis_Contig757:25461..25728Pylaiella littoralis U1_48CDSP-littoralis_Contig757 25462..25728 -
1680791562.2814684-CDS-P-littoralis_Contig757:26069..261531680791562.2814684-CDS-P-littoralis_Contig757:26069..26153Pylaiella littoralis U1_48CDSP-littoralis_Contig757 26070..26153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig757.16.1prot_P-littoralis_Contig757.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig757 25462..26153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig757.16.1

>prot_P-littoralis_Contig757.16.1 ID=prot_P-littoralis_Contig757.16.1|Name=mRNA_P-littoralis_Contig757.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
GPLTASLVPCSTGTSTAFDAQLRLPQHKGEELRLASTHHVLLVLVSVQQL
LLSTTHVHGDEREREAGCVWKVRSRPPQRRRDCKDCAAPVGALAPATTQL
RELGDTLEPESAGTLL*
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mRNA from alignment at P-littoralis_Contig757:25316..26153-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig757.16.1 ID=mRNA_P-littoralis_Contig757.16.1|Name=mRNA_P-littoralis_Contig757.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=838bp|location=Sequence derived from alignment at P-littoralis_Contig757:25316..26153- (Pylaiella littoralis U1_48)
GGCCCACTGACTGCCTCGCTTGTGCCCTGTTCTACCGGCACGAGCACTGC
ATTCGACGCCCAGCTACGACTGCCACAGCATAAGGTGTGTACGTAAGGTG
TGCAACAGCAACTTTCACACCAATCGCGCCATGGGCGAGTCCAGTAGGCG
AAGGCAAAGTGTGCCATGGTCCCAGCTGCTGTGACTGCTGTAGGATACCA
TTCTCTACAGATTCTCTTCGAATGCTCCGCACGCAAAGGCAGCTCTAATC
TCGAGCAGTAGGAGTTTGGGTTTGAACGGGCCATCGTTCGTCAGCTGATA
ACATAGCCAGCAGTTGGGTTGGGTGTGGGGTGAGGATTAATGTCTCCTAA
CGCCCATAACAACACTCTGAAATACTCGCTCCCGCTCTCTCTTTCGCTTG
ATTTCGCCGCATGTTCCTCCTCCAGGGGGAGGAACTCCGCCTTGCTTCCA
CTCACCACGTTTTGCTTGTCCTGGTTTCTGTTCAACAACTGCTGCTCAGC
ACAACGCACGTCCACGGCGATGAGCGTGAGAGGGAGGCGGGGTGCGTGTG
GAAGGTCCGATCACGGCCTCCCCAGCGAAGACGGGACTGCAAAGATTGTG
CTGCGCCTGTAGGCGCCCTGGCCCCAGCGACAACTCAACTACGCGAGCTT
GGCGACACATTGGAGCCGGAGAGTGCTGGGACTCTCTTGTAGAATGGGAA
GCTGCGGCGGCCGGCACGTGGCCCCACCGGCGAGACTTGCTGCAAGAGCC
TCTTCGGGCGAATGAGTGCATATGCTCGCGGGTTGATTGTGTTAGTGGGC
TGTACTCCAAGTTTCGGAAGCGACGTGCTGCAGCGGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig757:25316..26153-

>mRNA_P-littoralis_Contig757.16.1 ID=mRNA_P-littoralis_Contig757.16.1|Name=mRNA_P-littoralis_Contig757.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig757:25316..26153- (Pylaiella littoralis U1_48)
GGCCCACTGACTGCCTCGCTTGTGCCCTGTTCTACCGGCACGAGCACTGC
ATTCGACGCCCAGCTACGACTGCCACAGCATAAGGGGGAGGAACTCCGCC
TTGCTTCCACTCACCACGTTTTGCTTGTCCTGGTTTCTGTTCAACAACTG
CTGCTCAGCACAACGCACGTCCACGGCGATGAGCGTGAGAGGGAGGCGGG
GTGCGTGTGGAAGGTCCGATCACGGCCTCCCCAGCGAAGACGGGACTGCA
AAGATTGTGCTGCGCCTGTAGGCGCCCTGGCCCCAGCGACAACTCAACTA
CGCGAGCTTGGCGACACATTGGAGCCGGAGAGTGCTGGGACTCTCTTGTA
G
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