mRNA_P-littoralis_Contig119.64.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig119.64.1
Unique NamemRNA_P-littoralis_Contig119.64.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig119.64.1 vs. uniprot
Match: D7FY12_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY12_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 2.080e-130
Identity = 201/257 (78.21%), Postives = 227/257 (88.33%), Query Frame = 2 
Query:  407 MAMKEYELADVTAGGDDGESYF--DGGGASSNGLDAGQLLSGGGKLSD--GAGGEXXXXXEGQTVWCGCLSLVFYQQFFRVDTKDVTERWIHSIVSWRRETGFLDVVADNPDAYGPFWNSTTLIFLLALTTNLSEGEYDLNLLVISTWVVYGFAAGAPVLVWLVLNQLGTPIALVQLGCTYGYSLGPYLPAVLACALPLPYMAMVALAAAGVLSVVFLLRALTPILLERNAAVASPVMAGLGVLQVLFTLVIKFAFF 1165
            MAMKE+E++DVTAGG+D E+++  DGG   SNG+DAGQLLSGGGKLSD   AGG      E QTVWCGCLSL FYQQFFRVDTKDVTERW+HSI+SWRRETGFLD+VADNPDAYGPFWNST+LIFL+A TTNLSEG YDLN LV+STW+VYGFAA AP+ VWLVLNQ+  P+ LV+LGC YGYSLGPYLPA+L CALP+PYM +VAL+AAG LSVVFLLRALTP+LLERN A+ASPVMAGLGVLQV+FTLVIKFAFF
Sbjct:    1 MAMKEFEMSDVTAGGEDTEAFYGADGG---SNGVDAGQLLSGGGKLSDDSAAGG-----GEAQTVWCGCLSLAFYQQFFRVDTKDVTERWLHSILSWRRETGFLDLVADNPDAYGPFWNSTSLIFLIAFTTNLSEGGYDLNTLVVSTWIVYGFAACAPLAVWLVLNQMDLPVPLVKLGCMYGYSLGPYLPAILVCALPVPYMTLVALSAAGTLSVVFLLRALTPVLLERNVAMASPVMAGLGVLQVIFTLVIKFAFF 249
[Close]
BLAST of mRNA_P-littoralis_Contig119.64.1 vs. uniprot
Match: W7TJY7_9STRA (Protein YIPF n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJY7_9STRA)

HSP 1 Score: 139 bits (351), Expect = 4.130e-35
Identity = 78/202 (38.61%), Postives = 121/202 (59.90%), Query Frame = 2 
Query:  593 CGCLSLVFYQQFFRVDTKDVTERWIHSIVSWRRETGFLDVVADNPDAYGPFWNSTTLIFLLALTTNLS--------EGE---YDLNLLVISTWVVYGFAAGAPVLVWLVLNQLGTPIALVQLGCTYGYSLGPYLPAVLACALPLPYMAMVALAAAGVLSVVFLLRALTPILLERNAAVASPVMAGLGVLQVLFTLVIKFAFF 1165
            C CLS+ +YQ +F VDT+ V +R  +++  +++E+ F+ ++  NPDAYGPFW +T+LIF++A+ +N+S        EG    YD   +V     +YGFAA  P+L+W  L  +  P+ L+Q    YGYSL  ++P  L   +P P    ++  AA   SVVFLL+AL P+++E+    A P +A +G +Q+   L IK  FF
Sbjct:   52 CSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAMPFLASIGAVQLALALTIKLVFF 253
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BLAST of mRNA_P-littoralis_Contig119.64.1 vs. uniprot
Match: A0A835Z8E5_9STRA (Yip1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8E5_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.270e-34
Identity = 89/261 (34.10%), Postives = 131/261 (50.19%), Query Frame = 2 
Query:  593 CGCLSLVFYQQFFRVDTKDVTERWIHSIVSWRRETGFLDVVADNPDAYGPFWNSTTLIFLLALTTNLSEG-------------------EYDLNLLVISTWVVYGFAAGAPVLVWLVLNQLGTPIALVQLGCTYGYSLGPYLPAVLACALP---------------------LPYM------------------------------AMVALAAAGVLSVVFLLRALTPILLERNAAVASPVMAGLGVLQVLFTLVIKFAFF 1165
            CGC ++ +Y+ +F VDT DV +RW+ S++  RR+ GF++++ +NPDAYGPFWN+TTL+FL+A+TTNLS                     +YD   +V  + +VYGF A  P+LVW    QL   ++L+ + CT+GY    +LPA L CA+P                     LP+                                 VAL  A V+S +FLLR LTP ++E N   A  ++  L   QV F +++KF F+
Sbjct:  150 CGCFTVEYYKPYFNVDTGDVYKRWLGSMLFCRRQNGFVELMGENPDAYGPFWNATTLVFLVAVTTNLSSWLAFNGDQWYVFVRNRYRIPQYDFQKVVTCSAIVYGFGAVVPLLVWAAFRQLDVKLSLIHVLCTHGYGQAVFLPAALICAVPNGMFSTPSSWNQWIHFRDHMRLPHRISSDDTWRARRGCTALYAGVRDAAVVTLATCAVALGVAAVMSTLFLLRTLTPPVMEHNPTWAMIIVGVLVAEQVTFAMLLKFLFY 410
[Close]
BLAST of mRNA_P-littoralis_Contig119.64.1 vs. uniprot
Match: A0A7S0SX75_9STRA (Protein YIPF (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SX75_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.300e-34
Identity = 72/190 (37.89%), Postives = 116/190 (61.05%), Query Frame = 2 
Query:  590 WCGCLSLVFYQQFFRVDTKDVTERWIHSIVSWRRETGFLDVVADNPDAYGPFWNSTTLIFLLALTTNL----------SEGEYDLNLLVISTWVVYGFAAGAPVLVWLVLNQLGTPIALVQLGCTYGYSLGPYLPAVLACALPLPYMAMVALAAAGVLSVVFLLRALTPILLERNAAVASPVMAGLGVLQ 1129
            +CGCLS+ +YQ FF VDT D+ +R   ++   RRET F+D+++D PDAYGPFW STTL+F LA+T+++          +   YD   ++ ++ ++YGFA+  P LVW++L Q    + L+ + C YGYSL  ++PA L C  P   ++ + L     LS +F+LR+L P+++      +  ++  LG+ Q
Sbjct:   55 FCGCLSISYYQPFFDVDTTDIIKRLSLAVFYCRRETNFIDIISDKPDAYGPFWISTTLVFTLAVTSHIRGWLSSWMAGTTWVYDFQSIISASSLIYGFASFVPFLVWIILKQYDGNVKLITMICVYGYSLFMFIPASLLCLFPSEVVSWLILLVTACLSSLFILRSLGPLIIASVKQDSIMLLGPLGLTQ 244
[Close]
BLAST of mRNA_P-littoralis_Contig119.64.1 vs. uniprot
Match: A0A7S1XRC2_9STRA (Protein YIPF (Fragment) n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRC2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.330e-34
Identity = 74/169 (43.79%), Postives = 102/169 (60.36%), Query Frame = 2 
Query:  593 CGCLSLVFYQQFFRVDTKDVTERWIHSIVSWRRETGFLDVVADNPDAYGPFWNSTTLIFLLALTTNL---------------SEGEYDLNLLVISTWVVYGFAAGAPVLVWLVLNQLGTPIALVQLGCTYGYSLGPYLPAVLACALPLPYMAMVALAAAGVLSVVFLLR 1054
            C CLS+ +YQ  F VDTKDV +R + S++   + TGFL ++ D+PD YGPFW STTL+F +A+  NL                  EYD  ++V    VVYG+A GAPV +W  L  L   I L  +GC YGYSL P++PA L C +P  +++ + L  AG++S +FLLR
Sbjct:   56 CSCLSVKYYQPLFDVDTKDVVDRMLMSVLP-HKATGFLQMIKDSPDFYGPFWVSTTLLFTIAVVGNLLSWTKFQQLQGSSAEDSWEYDFEMVVTCMCVVYGWAVGAPVALWFTLRYLLVQIKLATVGCAYGYSLVPFVPAALLCGVPADWVSWLVLLLAGMISSLFLLR 223
[Close]
BLAST of mRNA_P-littoralis_Contig119.64.1 vs. uniprot
Match: A0A7S2UYF6_9STRA (Protein YIPF n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYF6_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.780e-33
Identity = 77/202 (38.12%), Postives = 117/202 (57.92%), Query Frame = 2 
Query:  587 VWCGCLSLVFYQQFFRVDTKDVTERWIHSIVSWRRETGFLDVVADNPDAYGPFWNSTTLIFLLALTTNL---------SEGEYDLNLLVISTWVVYGFAAGAPVLVWLVLNQLGTPIALVQLGCTYGYSLGPYLPAVLACALPLPYMAMVALAAAGVLSVVFLLRALTPILLERNAAVASPVMAGLGVLQVLFTLVIKFAFF 1165
            +WCGCLS+ FYQ++  VDT DV  R   S++  +    FL+++ D PDAYGPFW +TTL+F +++ TN+         S  EYD+N +V    ++Y +    P+L ++   QLG  I+ +QL   YGYSL  Y+P  L C +P   +  + L AAGV+S  FL RAL+P +L         +++ +    ++ TLV+KF  F
Sbjct:   99 MWCGCLSVRFYQKYVDVDTDDVVNRLKSSVLFCKPPQNFLELLGDRPDAYGPFWVATTLVFFMSVATNIFQWAHHTSDSIWEYDMNAVVSIASIIYAWLVFIPLLTYIACQQLGVSISFIQLFSVYGYSLFVYVPLALLCLIPNNLVIWLCLVAAGVVSSAFLFRALSPTILNGCKDHGVKIVSAVVSANLVLTLVMKFVLF 300
[Close]
BLAST of mRNA_P-littoralis_Contig119.64.1 vs. uniprot
Match: A0A7S2W6P0_9STRA (Protein YIPF n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6P0_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.990e-30
Identity = 78/197 (39.59%), Postives = 115/197 (58.38%), Query Frame = 2 
Query:  593 CGCLSLVFYQQFFRVDTKDVTERWIHSIVSWRRETGFLDVVADNPDAYGPFWNSTTLIFLLALTTNLSEG-----EYDLNLLVISTWVVYGFAAGAPVLVWLVLNQ-LGTPIALVQLGCTYGYSLGPYLPAVLACALPLPYMAMVALAAAGVLSVVFLLRALTPILLERNAAVASPVMAGLGVLQVLFTLVIKFAFF 1165
            CGC S+ +Y+ +F VDT  V ER + +   ++ E  FL ++ D+PDAYGPFW +TTLIF++A+T NL+        YD  L+     +VYG+ A  PV +W      LG  +AL+ L C +GYSL  ++P  L   +PL  ++  AL AA V S +F+LR++ P L   +   A  V+A     Q +F L++KF FF
Sbjct:   51 CGCFSVAYYRPYFDVDTDRVKERLLSTFTFYKPEPTFLTLIKDSPDAYGPFWTATTLIFVIAVTANLTSNAKTGYNYDFELVTSCMSLVYGYLAFLPVTMWAAFKYILGVQVALMNLLCLFGYSLFLFIPFALLALVPL--LSWPALMAAMVSSTLFILRSVIP-LASSSKEKAMSVLAVFITCQAIFVLIMKFRFF 244
[Close]
BLAST of mRNA_P-littoralis_Contig119.64.1 vs. uniprot
Match: A0A662XNT8_9STRA (Protein YIPF n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNT8_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.120e-27
Identity = 69/173 (39.88%), Postives = 99/173 (57.23%), Query Frame = 2 
Query:  593 CGCLSLVFYQQFFRVDTKDVTERWIHSIVSWRRETGFLDVVADNPDAYGPFWNSTTLIFLLALTTNL----------SEGEYDLNLLVISTWVVYGFAAGAPVLVWLVLNQLGTPIALVQLGCTYGYSLGPYLPAVLACALPLPYMAMVALAAAGVLSVVFLLRALTPILLER 1081
            CGCL+L +Y+ +F VDT DV  R + ++V +++E  F ++   +PDAYGPFW STTLIF LA  +N+          SE  YD + L  +  +V  F  G PVL+WLV      P+ L+ L C YGYS+  ++PA + C +P+  M  V L  A   S+ FLL  L  ++ E 
Sbjct:   29 CGCLTLAYYKPYFDVDTTDVQLRLMRALVPFKKEPSFAELAMASPDAYGPFWLSTTLIFCLASCSNVASFLDYTGDTSEWSYDFSRLASAYTLVEIFLLGLPVLIWLVGKYFQVPMTLLFLVCLYGYSMMMFIPAAILCTIPIDAMDWVVLLLAMTWSLFFLLSNLWSVISEH 201
[Close]
BLAST of mRNA_P-littoralis_Contig119.64.1 vs. uniprot
Match: H3GVJ5_PHYRM (Protein YIPF n=25 Tax=Phytophthora TaxID=4783 RepID=H3GVJ5_PHYRM)

HSP 1 Score: 116 bits (291), Expect = 2.160e-26
Identity = 74/202 (36.63%), Postives = 110/202 (54.46%), Query Frame = 2 
Query:  593 CGCLSLVFYQQFFRVDTKDVTERWIHSIVSWRRETGFLDVVADNPDAYGPFWNSTTLIFLLALTTNLS----------EGEYDLNLLVISTWVVYGFAAGAPVLVWLVLNQLGTPIALVQLGCTYGYSLGPYLPAVLACALPLPYMAMVALAAAGVLSVVFLLRALTPILLER-NAAVASPVMAGLGVLQVLFTLVIKFAFF 1165
            CGC SL FYQ +F VDT DV +R + ++V ++++  F ++    PDAYGPFW STTLIF LA  +N++          E  YD + L  +  +V  F  G P+L+WLV      P+ L+ L C YGYS   ++PA + C  PL  M  V +  A   S+ FLL  L  ++ E        PV+A +    +++ +++K  FF
Sbjct:   65 CGCFSLAFYQPYFDVDTSDVQQRLMRALVPFKKDPTFAELALKAPDAYGPFWLSTTLIFCLASCSNVASYLDYEGNTDEWSYDFSRLASAYTLVEIFLMGLPMLIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCISPLDGMDWVVMLMAMAWSLFFLLNNLWHVISEHLTKEKMLPVLAVISGAHMMWAILMKLLFF 266
[Close]
BLAST of mRNA_P-littoralis_Contig119.64.1 vs. uniprot
Match: F0W111_9STRA (Protein YIPF n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W111_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.540e-26
Identity = 71/202 (35.15%), Postives = 106/202 (52.48%), Query Frame = 2 
Query:  593 CGCLSLVFYQQFFRVDTKDVTERWIHSIVSWRRETGFLDVVADNPDAYGPFWNSTTLIFLLALTTN----------LSEGEYDLNLLVISTWVVYGFAAGAPVLVWLVLNQLGTPIALVQLGCTYGYSLGPYLPAVLACALPLPYMAMVALAAAGVLSVVFLLRALTPILL-ERNAAVASPVMAGLGVLQVLFTLVIKFAFF 1165
            CGC +L FYQ +F VDT+DV +R + +I+  ++   F +++   PDAYGPFW STTLIF+LA  +N            E  YD + L  +  +V GF  G P+L W  +   G  ++L  L C YGYS   Y+PA + C LP      V L      S+ FLL   +  +  + +     P  A +  + +++T+V+K  FF
Sbjct:   58 CGCFTLAFYQPYFDVDTRDVQQRMLRAILPLKKNPHFTEIIGTCPDAYGPFWLSTTLIFMLASCSNGAGYLDYQGDKGEWTYDFSRLATAYTLVAGFVLGVPILTWGAVRYFGVALSLTYLICLYGYSTTLYIPASILCMLPEDASDWVVLLFTMTWSLFFLLNNFSNAMRGQLSNEKMLPFFAFISAVHLMWTIVLKLCFF 259
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig119.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY12_ECTSI2.080e-13078.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TJY7_9STRA4.130e-3538.61Protein YIPF n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A835Z8E5_9STRA1.270e-3434.10Yip1 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S0SX75_9STRA2.300e-3437.89Protein YIPF (Fragment) n=1 Tax=Chromulina nebulos... [more]
A0A7S1XRC2_9STRA5.330e-3443.79Protein YIPF (Fragment) n=3 Tax=Phaeomonas parva T... [more]
A0A7S2UYF6_9STRA1.780e-3338.12Protein YIPF n=1 Tax=Fibrocapsa japonica TaxID=946... [more]
A0A7S2W6P0_9STRA4.990e-3039.59Protein YIPF n=1 Tax=Rhizochromulina marina TaxID=... [more]
A0A662XNT8_9STRA4.120e-2739.88Protein YIPF n=2 Tax=Nothophytophthora sp. Chile5 ... [more]
H3GVJ5_PHYRM2.160e-2636.63Protein YIPF n=25 Tax=Phytophthora TaxID=4783 RepI... [more]
F0W111_9STRA3.540e-2635.15Protein YIPF n=1 Tax=Albugo laibachii Nc14 TaxID=8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig119contigP-littoralis_Contig119:360712..369819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FY12
Preferred nameYIPF1
PFAMsYip1
Model size1241
Max annot lvl2759|Eukaryota
KEGG koko:K00688,ko:K03155
KEGG ReactionR02111
KEGG Pathwayko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931
Hectar predicted targeting categoryother localisation
GOsGO:0000138,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005802,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0030133,GO:0031224,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0051020,GO:0051179,GO:0051234,GO:0097708,GO:0098791
Exons10
Evalue3.08e-134
EggNOG OGsKOG3114@1|root,KOG3114@2759|Eukaryota
EC2.4.1.1
DescriptionRab GTPase binding
Cds size762
COG categoryS
CAZyGT35
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig119.64.1prot_P-littoralis_Contig119.64.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig119 360785..368490 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789500.4123995-UTR-P-littoralis_Contig119:360711..3607841680789500.4123995-UTR-P-littoralis_Contig119:360711..360784Pylaiella littoralis U1_48UTRP-littoralis_Contig119 360712..360784 -
1680789500.5051305-UTR-P-littoralis_Contig119:368490..3685381680789500.5051305-UTR-P-littoralis_Contig119:368490..368538Pylaiella littoralis U1_48UTRP-littoralis_Contig119 368491..368538 -
1680789500.5131116-UTR-P-littoralis_Contig119:368585..3686111680789500.5131116-UTR-P-littoralis_Contig119:368585..368611Pylaiella littoralis U1_48UTRP-littoralis_Contig119 368586..368611 -
1680789500.523839-UTR-P-littoralis_Contig119:369487..3698191680789500.523839-UTR-P-littoralis_Contig119:369487..369819Pylaiella littoralis U1_48UTRP-littoralis_Contig119 369488..369819 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789500.4273908-CDS-P-littoralis_Contig119:360784..3608331680789500.4273908-CDS-P-littoralis_Contig119:360784..360833Pylaiella littoralis U1_48CDSP-littoralis_Contig119 360785..360833 -
1680789500.4365547-CDS-P-littoralis_Contig119:361816..3620131680789500.4365547-CDS-P-littoralis_Contig119:361816..362013Pylaiella littoralis U1_48CDSP-littoralis_Contig119 361817..362013 -
1680789500.4462988-CDS-P-littoralis_Contig119:363366..3634871680789500.4462988-CDS-P-littoralis_Contig119:363366..363487Pylaiella littoralis U1_48CDSP-littoralis_Contig119 363367..363487 -
1680789500.454249-CDS-P-littoralis_Contig119:364163..3642161680789500.454249-CDS-P-littoralis_Contig119:364163..364216Pylaiella littoralis U1_48CDSP-littoralis_Contig119 364164..364216 -
1680789500.4622679-CDS-P-littoralis_Contig119:364481..3645411680789500.4622679-CDS-P-littoralis_Contig119:364481..364541Pylaiella littoralis U1_48CDSP-littoralis_Contig119 364482..364541 -
1680789500.473933-CDS-P-littoralis_Contig119:365350..3654131680789500.473933-CDS-P-littoralis_Contig119:365350..365413Pylaiella littoralis U1_48CDSP-littoralis_Contig119 365351..365413 -
1680789500.4839678-CDS-P-littoralis_Contig119:366584..3667631680789500.4839678-CDS-P-littoralis_Contig119:366584..366763Pylaiella littoralis U1_48CDSP-littoralis_Contig119 366585..366763 -
1680789500.4918072-CDS-P-littoralis_Contig119:368450..3684901680789500.4918072-CDS-P-littoralis_Contig119:368450..368490Pylaiella littoralis U1_48CDSP-littoralis_Contig119 368451..368490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig119.64.1

>prot_P-littoralis_Contig119.64.1 ID=prot_P-littoralis_Contig119.64.1|Name=mRNA_P-littoralis_Contig119.64.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=254bp
MAMKEYELADVTAGGDDGESYFDGGGASSNGLDAGQLLSGGGKLSDGAGG
EGGGGGEGQTVWCGCLSLVFYQQFFRVDTKDVTERWIHSIVSWRRETGFL
DVVADNPDAYGPFWNSTTLIFLLALTTNLSEGEYDLNLLVISTWVVYGFA
AGAPVLVWLVLNQLGTPIALVQLGCTYGYSLGPYLPAVLACALPLPYMAM
VALAAAGVLSVVFLLRALTPILLERNAAVASPVMAGLGVLQVLFTLVIKF
AFF*
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mRNA from alignment at P-littoralis_Contig119:360712..369819-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig119.64.1 ID=mRNA_P-littoralis_Contig119.64.1|Name=mRNA_P-littoralis_Contig119.64.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9108bp|location=Sequence derived from alignment at P-littoralis_Contig119:360712..369819- (Pylaiella littoralis U1_48)
GTAAACCGTCAAACGCGAGGCGCGATTAACAGAGTGTGAGTCTACGAGAG
GGCGCCCAACCGAAGCAGCCAGTACAAAGTGAATGTAAGCCCCACGAAGC
GTTTTTTAGTCGTTTCGGGAGAGAGTTGGCATCATATCATCCTGCTGTGC
TATCTTGGTCCGTTTTCTGTGGAGCATTCGTTCGCTGAGCAGTGTAGTTT
CCCACAACCACGAGACACTCGAGTTCATCCGCTGGAACGAACGAACCGAG
CGTGTAGTGCACCACCACCACCACCACCACCACCACCACCACCACCCAGA
ACCACCAGCCAGCACCACCAGCACCAGGGTATGTACATTGCACCGGTCAG
CGTATCTTCGCGCCCCTTGTAGTGCTCTACTGCTGTGGTGTCCCCAGCTT
TACGTTAGACGCGCACATCACGAGTATGTAGACCACCATCTGCTGCACAG
CACAGCAAGCAGTCGATGCCTATTCTGCTGCTCTGCACCAAGAACGTGGA
TATTTCGATATTTCGCTATTTCAAATAGTTCGATGTTTCTAACCCTGCAC
ATACCCAGTGCTGCGGCCAGCAATACAGCAGTCAGTAGTTAAGATGTGTG
TGCGTGTTGTGTTGTATCGTGGGCTGTTTTCATCCCATCTGCATTTCTAT
TCTGGACTCCAATCTACTGCTGTATCTGTACAGCAGAACGCCTTCAGCCT
TTGTACAGCAGTATATTGATCAGCTAGGATTGGCCACATGAAGGTGCGCA
CCAACACTAATATACCTGGTACTTAATATATTGTACCGCAGCATCGCCGT
GCCGGTCACAGGGATGGCGAGGCTCGGGGATGGGGTAACGAGTAAATATC
AAAACGCCCCATGCATCATGCTGGGCATGCATGCCAGAGGAGTTACGAGC
AGGCTCTTCCCCCCCCCGACATACCTTCCGGTGCCGCCCCACCGCCAACT
TGTTTAGCAGCAACGCCTCCATCAAGTCAGCAATAACGCCTCCACGAAAC
ATGATATCTGCACACGCTCGCGTCCAGCCTGCTCGGCCCGCAGCCAGCAG
GCATCTATTACACCATACCATACAACAGTTACACAGCAGCAGTGTTGTTT
TTTGCTTTTTGCAATGATAATTATTCCGTTTCTTGTTTCATTCGTCTCGT
TCTTGTTTTATTCTTTATTTGTGCGGTGCCCCCTTCTTGACAGCAGCAGC
AGAAACAGCAGCAGAAACAGCAGCAGAAACAGCAGCAACACAGCACAGCG
CCGACAGGTGCGTTGCCGTATTTCACAGGAGAAGAGCGAGGGCGAGAAGG
ACAAGGGACAGGGAGCAAACGAGGAGACCATGGCTATGAAAGAGTACGAG
CTGGCGGATGTCACTGCAGGTATGGTACGATACTTCTTCTGTTTGGGTGT
GGGTGTGAGGGCGGTGGTTGGTACCAGTCGTGTTATCATATAATACAAGT
ACCTGGATCAGGACACCGCCCGCATGATGTCATATGTGTCACATTCGAAC
CTGCTTGCGAGCGTTGGTTTGAAAAATACGGCAGAGTTCTGTCCTGAGAA
AGTGCAGTTTCAAATTCAACGTATCACATGATACGCGCTAGTTTATATAC
AGTTTATACTTGTGCTGTAGTACCGTGATTACATCCCAGCTACAATACTT
GTCGCATAGCACGTACGACGTGGAATCGTACCCACAACAAACACGCCTAC
CTTCCATTGTGCTTCCTCCCACCAAATCCCTCACCACGGCGCTCTCGCAT
ACCTGCCGGCACAGGCAGACGATTGATTCCTACTTATGTTGTGTTTGAAG
GTAGATATACTCTTAGACACGCCTGCCCGCAGGTTTCCAGCCTTCCTGTC
TTCTTCAACCCCGAAGCACGGACGCCCGACCCCAAACCCTAACCCCAACC
CTACCTGTGCCCTAACCCTCAGGAGAGGTAGGGGCTTGGCTGCTGTGCCT
TAGCAAGGTGTAAGGTTCTGCACAAGTGGCTGTCGCCGTCAAAATGGTTC
GCCGGCGGGCGTGTCTCGTCTGCCCGCGCCTCTGTACAGCCAAAATAACG
CTACAATTTATGGCTTTCAGCTCTGAGAACCGACATGCCTCTTTCTTTTC
TTCACAGCAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGAGGA
GCCCCGTAGCGACGAGAACCGTTACGATAACGTTCCTCGCGCAGCGTTCC
TCTAGCTCTCTGCTAAATTGTTAACCGTTTCTCCGGGGAGTCACCGTCTC
TCTGTCGTCGGAGCGAGTGGTCCTTCGGCTGCAGACACGAAGGGTGTCAC
GCCACAGCCCATCCCACAAGCACATATCCCACCATGGACTGTCTTGGGTA
CCCTGTCTGTCTGTCTTATCTGTCTGTCTGTGTGTCTGTCTTGTGTGTCT
GTCTGTCTGTCTTTCTATGTGTCTGTCTGTCTGTGTGTCTTTGTGTCTGC
CTGTCTGCCTGTCTGTCTGCCTGTCTGCCTGCCTGCCTGCCTGTTTGTCT
GTCTGACTCTCTGTCTGCCTGTCTGTCTACAAGTATCTGTCTATCCCTCT
TCGTTCGCGGCGTGATCCGTGTTCCGATGCGAGGCCTCCTTTCGCTCGAA
CCCCTCTTGTAGCCACACTTGTTTCCCTTCCACCCGGCCCTTTCTGGGGC
CACGTCGTTGTACATAGCTCAGTTGCCAGAGGTCTCTGCTGTCTCGTCAG
ACACGCGGGTGGAGGATCATGTATAACCCTTAACCCTCCAGCGGCTTTGC
CACTTGTACGTCTCCCGCCACTCATCTGCTGTAATTCGGACAGCCGAGGG
ATCAAATATGCCTGGTATATTTTAACCCTCCAAGTTTGTTTGTTTTTTGT
GCCCCCTGTGACTCATCTGCTCTTTGTCAGGAGAGATTAGGAATCCGACG
GTTTTTCTATGCACGAAAAACATGGTGCTCAATCCTTGTTATTGTCGTCG
ACTGCAGCAGCTCAACCGAGGGCTGCGTATTATTTATTACCTGTCCGTGT
TTTTTTTATTTTAAATCATTTTTTTTTTACTTTTTTTTTGCCGTTTACGA
TACCAGGGGGGGACGACGGCGAATCATACTTCGATGGGGGTGGCGCAAGC
AGCAATGGGTTAGACGCGGGACAGCTGCTCAGCGGCGGGGGTAAGTTGAG
CGACGGTGCTGGCGGAGAGGGCGGCGGCGGCGGCGAGGGGCAGACGGTAT
GGTGTGGGTGCCTGTCGCTCGTTTTCTACCAGCAGGTGCGTGCGCGTGTG
GCGGAGGTGGGGGCTCCGTGCGGTGGGCCCTCTTTCTCTTTTCTTGGGTC
TGTCTGTCTGTCTGTCTGTCTGTCTCTGTCTGTCTGTCTGTCTGTCTGTC
GGTTTCGTTTATGTGTCCGGTGGAGTTTTTATGACCCACCCGGGGTGTAA
ATGACTCGAAGAACCATTGTTCGTTATTTGGAGCACACGCTTTCATGTCG
TGTACGCCGCTTTGCTACATATCTGGTCAGCTCTCGTACTGTGAAGGAAA
TATTTTTTTGCACTGTATACCAAGTGCGACAGTAGCTTTAGCGTGTGTTA
CTTTCAGCATATCCCGCAAAAGGAAGGCGTGAGAGACGGGACTTAGAGAG
AGGAGATCCCTTGTGCTTCTGTGTGACTAGCCCCGGCTTTTATTATCAGG
ATATTCGCTACATGGTCGAATGTCGTGTCCGCAGGAGGGTGGGGGGGGGG
CTCGAGAGAGGGGATTCCTTATTCTGCTGTTTGACTAGCCCAGTTTTTTT
TATCAAGATTACCGCTACATGGTCGAATGGCGTGTCCGCAGAAGGAAGGT
GTGAGGAGGGGGAGGGGGAGGGGGGGGGGGGATTACACCTTCTGCTGTCC
GTGAACGAATGTCAGCGAATAATGTGAGGGTGCCTGAAGAATAGAGAAGA
TGAGTTGACACAGAGGTGTTCTACTGTACATACAAGGAATACACATTTGG
ATGATGATCAAACCGTACCGTGGGAAAAGAAAAAACATTTTTCTCTGAAT
AACGACGTATACTTAAAAAAGCAGGAAGCACATGCTTGTGATATTTTAAG
ATTTTCCCTTTTGTTGAACGATCCGTGTTTTTTTTCTATTGCCTCGCCCC
CCCCCCCCCCCCCGATGTTTTCATTATACTTTTGGTAAATGTGGGTGTCT
TTTGTCATGCCGACGATAATTCCAGTCACGGCGATTTTTTTGGTCCGTCG
GTAGGATAGATGTCGGCTCCTATCATAGCACGCCGACAATGATTTCCGAT
GTTGTTGTTGCTGCTGCTGCTGCTGCTTTTGTTGCTTTTGTTGCTTTTGC
TTGTTGCTGCTCTGCTGCTGCTTGCTGTTCTCATCACTTCCGCGTCTGCT
TTTTTTTTATTCTCTCTCTCTCTTCTGCTGGACAACTACTGCTGTTGTTG
CAATAGTTTTTCAGGGTGGACACCAAGGACGTGACCGAGAGGTGGATTCA
CAGCATCGTTTCTTGGAGGGTAAGCCGTGCGCAGTAAAGGCAAATGTCTG
TGCGTGCGTGTGTGCGTGCGTGTGTGTCTTTATGTCTGTGTCTGTGTGTT
ATCATCCCATCTAGTTACGGGCGCCGCTCTTCATCGTCCGGTATACGTCG
GGCGCACGAGCCGGGACCGGTCACACATATAGGAAGGTCAACACCTGCCT
CTAGGAATTTTTTATGTTATCTTTTTGGAGGCGCTTGGTTGCTGGTTAGT
GTGAATCCCCACATTCGCTACTGCTGTGCTGTACCGAACTGCAAGAAAGT
GGAAACGTACTAAAACAGTAGAATAATCCTCGCAAAACTCTCCTCCAAGC
CACCTGAGTCATCTGCAGTACTCCGGGACAAGTTTGATCATGCCAAACAA
TAACAGTATCATCGCGCTGTTTCAACAGCAGCGCCCCATGGCACACACGT
ATAACGCAACCGATTCTTGCTTGTACATGAAGAATCACGAGGGGTTCGGT
CAGGGCCTATGATAACCTGTAATACAAATGTCCCCAAAGGCTCAAGGGTT
TCCTGGAGGTTTCCGCTTTTTTTTTTTTTCTAACGTTTGCGCGCGTGCTT
CGCTGCATTGTGAACTACGTTTTCAAAAATGCCCGACGGTGAATACTACA
ACCCATGTCAAGCTATATCTTACTTCGAGTACGTGTTTCAAGGCCACCGT
GACACAGCAGCAGTATGTCGCGTTCCGTTTTTGTTTTCTTTTTCCCTGTG
TGTTTTTTGTTTTTTTCTTTTTGCTAAGCAGCCCCTTTTGTTTCTCTTCT
TCGTTGTTTTTCGCGTCACACCTACCAGCGAGAAACGGGGTTTCTGGACG
TTGTTGCAGACAACCCCGACGCTTACGGACCATTCTGGGTGAGTTGAGTT
GTTGTCGTTGTTGGTGTTACCGTTATCGTTGTTGTTGTTGTTGTTGTTGT
AGAAATGGAAGTTACGTCCCGGTGTGACGTTTAGCGGTTGTTTCTATTTC
AGCTTGCCATCGCCGGTGTCGCCAGCATCATGTCCGTACTGTTGTGCTCG
TACTCGTCTCTCGTTTCCTCGTGGCCCTCCCCCCCCCCCCACCCACCCAC
CCACCCGTCCCCCCGTCCCCCCCCCGACCGTAACGCCCGTCCTCACCTAA
CAGAACTCCACGACGTTGATTTTTCTGCTAGCCCTCACCACGAACCTCAG
CGAAGGGTAAGCAACAGCAAGCGAGAAAAGAGGGGCGTAGCTTGGGGGGG
TGGGGGGGGGTGGGCAGGAGGAAATGGGAGGCGGGCTGCACTGTAGCAGT
TCCAGCGGCCTCCGTGTTGTCTTGCTTTCTTCTTCTTTCATTGTGCTTTG
AATTTTTCGATTTTTTCCCGGCGATTGGATGACCGACGGCTCTTCATTCG
TTCGTTCACGAGTGTGTGTATGTGTGTGCGTGTGCGTGTGCGTGTAGTAT
GGTAGCAGTTGTGGAACCTGTAGTTTCAGTGTGCGTGCATATGTTTCTGC
GAACCCAAAGTGAAAGTACGATCGATATGTGTTGCTGGTTGTGGTTATGG
CGTCTCTGCGCTCACGCACTGCTGTCTGTCTGTCTGTCTGTGTGTCTATG
TTTGTTTTTCTGTCTCCCTCCCTCTCTCCCTCTCTCCATACCTACCTCTC
CCTCTCTCCCTCTCTTTCGTCCACACCTCTCTCTCCACACCTCTCTCTCT
CTCCCTCTTTCCATATCTATCTCTCCCCCCCATCTTTCTCCCCCTGTCTT
TCACATGCCTCTCTCCACATCTGTCGGCCTGTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCCCTCCCCCCCCCCCCCTCTCTTTCTCTCTTTCTTT
GTATATGTTTCCTTTCCTTCGCCTCTCTTAAGGGAGTACGACCTAAACTT
GCTTGTCATTAGCACGTGGGTCGTGTACGGCTTCGCGGCAGGTGCTCCCG
TCTTGGTGTGGCTGGTGCTCAACCAGCTGGGCACCCCGATCGCGCTCGTG
CAGGCAAGAAAAGGAGGAAGGAATCGAGGGACATTGTCCCGAGTATTTCG
GTGCAGATTTTTTTTTTTTGCACTAAACTCGCACAGCAGGAGTCCATCAG
AGTTCGTTGCGGTTTCTCGTAGTGGTAATCCAATAGTTGATGTGTTTACT
ATATCCGGTACATCAGACACTACCTTTTTGTGGAGGTCGAAATGTATTTT
ACGGTAAAAAGGTACCCCTCAATGGTACGTTGATGTTTCTGTACGTTGTT
GATGCGTGCGCAATATGATAGTTTGATACAAGCAACATATTTTTTTGTGT
GACGTGTGTATGATATCTGTTTTAATGTACTGGGACGTGTCATATACTCA
TGTACGAGAAGAACAGCAGTACGTCAAAAAAAAAATTGTTGGCCGGTACA
TTTGTTTTTTTTGTACATACGGAAAAGGGAAAATATGCTTCGAACGTACG
ATACTATATGATACGAGTGATATCATACATGTACGCAAGTGTTGTTTTGA
AACGCACACGTCATACATACATCTGGATATTTGTTTTTGGCACGTACAGA
TCGAGAACAAAAAAAGATGGAGATAAAATACACTTCGTCCTTACCGTCAT
ATGTTATCCCTCTGTCGAGCTTCCTTCTGTATGACTGGCCAACTCTGGCC
GATAATGCTGCGCCCACTCACATGGAAAGGTCCAGAATAGATGGGATCAC
AACACACACATACACACACATGACAGGTGCTCGTAGATCGCATTTCTTTT
CGCAGATGAATTCCCCCCCCCCCATCCCCCATCCCCCAAAATAGATGCGT
TCCACACCTCGTTCGTAGATGCCAACCACTGAGCACATACCGGTAAGCAT
CCCCCTAAACTAAATGCGTTTTCAGGCCTCGTGAAAGTCAACCAATGAGC
ATATTTCACACCGGCACGCATGCACGTGGTATACTTGCAACTCCCCTGCA
CACTCCTTCCTCTTTTTTTTTCCCTTGCACTCCTCGCGCCTAGATCTGGT
GCCGTTCACTCACACTACTTTGATGCTGTAGTATCGTACATACAAGCATG
ATATTTACTTTGATGCTGTAGTATCGTACATACAAGCATGATATTTACAC
ACACACACACACACACACACACACACACACACACATACGCACACCTTTTT
TTTTTCATTTGCAGCTGGGGTGTACATACGGTTCACACTCCCTCTGATGC
TACAGTATCGTACTCAAGCATGATGATTCACACCCCCCTCTCCCCCCTTT
TTTTTATTTGCAGCTGGGGTGTACATGCGGTTCACCTCTTGATGGTATTG
ATATCGTACTCAAGCACGATAATTTACACCCCCCCCCTTTTTTTTTTCAT
TTGCAGCTGGGGTGTACATACGGTTACTCGTTGGGACCATATCTTCCAGC
GGTGCTCGCTTGCGCGCTGCCGTTGCCGTACATGGCCATGGTGGCGTTGG
CAGCGGCGGGGGTGCTGTCGGTGGTGTTCCTCCTGCGAGCCCTGACGCCG
ATCTTGCTCGAGAGGAACGCGGCGGTGGCGTCGCCGGTGATGGCGGGGTT
GGGGTGAGTTCCACGGTATGATAAAAACAGCACTACTTTATTTTAAGTAG
TGCAGGTTTTTGGATTCGACCGGCAAGGCCTCTCTGTCAGCGTGTGTGTG
TGTGTTTTTTTATTGAATCCGACACTCCCTGACCAAGAATCGAATCAGAA
ACCTCATGATCAGCGTTTACGTGTGACTTATCATATCATACTTCCTGAAG
ACACTCAGGAGTGGAGAGGCTCTTTCGTCGTCGAGCCGCGACTTCCTTAG
CTGTAGATTGCTGTGTTGTACTCGCCCTTTCGAGTCGCCCCGGCATCCCG
TCCCGTCCCGTATCGTACCGTATCGTCCCCGTGCCCACCATCCGGGTGCT
TCTGCTCACAGGTCAAGTTACGACACCACATCGTTCATTTACAGCTTTTC
GGTGATCGGTGTTGTTGTTATTTTTTAAAGAGCAGGCACCTGTAACTGCC
GTTCCACTGCCGTTGCCTGTATAAACTGGTACTACGATATGATACAGTAG
CCGTATTGCGTGTCTGACGATAGTACTGGAAAACTCGAGGCCAATGACGA
AAAGGGGACACCAGTTGGATGACGCCCGGGAGCGCTGCTGTGGGTTGCAG
CGGGGGACGGAGGGCACTTGGTTAGGAACGCTGCAGTAAAAACTGCATGC
CGACCGGCAATAATATTGTGTCGTTGGTGTTTTATTTTTCACCTTGTTTT
TCGTTGTTTTTTGACGGAGCGACGGACCGTCGGAAAAATGTTGGTTGGTT
GCTGGTGTTGCCTCCATGTAGCCATCGCCCCTGCGGAGATACTGCTGGTA
CCCCCCCCCCCCACCCCCCCCTCTCCCTCCCCTGCCCTCCCGGCTCACTT
CCGTCCACCGCCCCTTTCGCTGTCCCCGCCCCCCGGTTACGGCAACTCCC
ATCGTTCGTTGCGCCCGCCCCCCCCCCCCCCTCCCCCCCTTTCCCACAAA
TACAAAAAAATACTTGTATCACCGAACGTTACGCAGGGTGCTCCAGGTAT
TGTTCACCCTCGTGATCAAGTTCGCCTTTTTCTAAGTTTTTTTTGTTAGC
TGCAAAATCGAACACAGAGTGTGTGGTGTGTGCGTGGGAAGGCGCAGCAG
GGAGGTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig119:360712..369819-

>mRNA_P-littoralis_Contig119.64.1 ID=mRNA_P-littoralis_Contig119.64.1|Name=mRNA_P-littoralis_Contig119.64.1|organism=Pylaiella littoralis U1_48|type=CDS|length=762bp|location=Sequence derived from alignment at P-littoralis_Contig119:360712..369819- (Pylaiella littoralis U1_48)
ATGGCTATGAAAGAGTACGAGCTGGCGGATGTCACTGCAGGGGGGGACGA
CGGCGAATCATACTTCGATGGGGGTGGCGCAAGCAGCAATGGGTTAGACG
CGGGACAGCTGCTCAGCGGCGGGGGTAAGTTGAGCGACGGTGCTGGCGGA
GAGGGCGGCGGCGGCGGCGAGGGGCAGACGGTATGGTGTGGGTGCCTGTC
GCTCGTTTTCTACCAGCAGTTTTTCAGGGTGGACACCAAGGACGTGACCG
AGAGGTGGATTCACAGCATCGTTTCTTGGAGGCGAGAAACGGGGTTTCTG
GACGTTGTTGCAGACAACCCCGACGCTTACGGACCATTCTGGAACTCCAC
GACGTTGATTTTTCTGCTAGCCCTCACCACGAACCTCAGCGAAGGGGAGT
ACGACCTAAACTTGCTTGTCATTAGCACGTGGGTCGTGTACGGCTTCGCG
GCAGGTGCTCCCGTCTTGGTGTGGCTGGTGCTCAACCAGCTGGGCACCCC
GATCGCGCTCGTGCAGCTGGGGTGTACATACGGTTACTCGTTGGGACCAT
ATCTTCCAGCGGTGCTCGCTTGCGCGCTGCCGTTGCCGTACATGGCCATG
GTGGCGTTGGCAGCGGCGGGGGTGCTGTCGGTGGTGTTCCTCCTGCGAGC
CCTGACGCCGATCTTGCTCGAGAGGAACGCGGCGGTGGCGTCGCCGGTGA
TGGCGGGGTTGGGGGTGCTCCAGGTATTGTTCACCCTCGTGATCAAGTTC
GCCTTTTTCTAA
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