mRNA_P-littoralis_Contig757.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig757.11.1
Unique NamemRNA_P-littoralis_Contig757.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig757.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig757contigP-littoralis_Contig757:21446..22486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size234
Hectar predicted targeting categoryother localisation
Exons3
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791562.1396646-CDS-P-littoralis_Contig757:21445..215751680791562.1396646-CDS-P-littoralis_Contig757:21445..21575Pylaiella littoralis U1_48CDSP-littoralis_Contig757 21446..21575 +
1680791562.1582854-CDS-P-littoralis_Contig757:22124..221991680791562.1582854-CDS-P-littoralis_Contig757:22124..22199Pylaiella littoralis U1_48CDSP-littoralis_Contig757 22125..22199 +
1680791562.172669-CDS-P-littoralis_Contig757:22457..224861680791562.172669-CDS-P-littoralis_Contig757:22457..22486Pylaiella littoralis U1_48CDSP-littoralis_Contig757 22458..22486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig757.11.1prot_P-littoralis_Contig757.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig757 21446..22486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig757.11.1

>prot_P-littoralis_Contig757.11.1 ID=prot_P-littoralis_Contig757.11.1|Name=mRNA_P-littoralis_Contig757.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
ALLLRSRNSVTKGCLYGEDSGACPVTDRRPEEGCWLLHRDDDGDGKDVGL
PFVWIRCWVSTNALKDEAAIVKPHFLLV
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mRNA from alignment at P-littoralis_Contig757:21446..22486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig757.11.1 ID=mRNA_P-littoralis_Contig757.11.1|Name=mRNA_P-littoralis_Contig757.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1041bp|location=Sequence derived from alignment at P-littoralis_Contig757:21446..22486+ (Pylaiella littoralis U1_48)
GCACTGCTGCTGAGGTCGCGCAATAGTGTAACGAAAGGCTGTCTATACGG
GGAAGATTCTGGTGCCTGCCCAGTTACAGACAGACGTCCAGAGGAAGGCT
GCTGGCTGCTTCACCGCGATGACGATGGAGGTGTGTTGTGTTGTGGTGTG
CTGTGTTGACTGTTTGATCTTCTCTCTTGTCATCTGGTACCCCTGCTGCT
TGTGTGCGTGTGCCGTGCTGTGCTCGTCACCCGGGGCAGGGCAATGAACT
GCCTTGCTCGATTGCTGTGTAGATTGCACAGCGTCACGAAGGGCTAGACT
AATGCGAGGATGGATTTTATTCTACATATGTGTATAGGTATCTTGTGCAG
CAGGACGTGTTTGAAAAATCTCTCCGCACCAACACATGAACATGATGATT
CAATACAAATACTTCGAAGTATACATGAATACACCTGTTTAGTCTGTAGC
ACAGCAGACAGCTGTATTCATATTGTTCACAGCAGTATACTAGTGCTGTA
CCAGCACCCACATTTGTATGGCCCGTACAGCAGTACTACTCTACACAGCA
GTATACTAGTTATCTACTTATAGTTGTCGAAAGAAACACGCACGTGCAAA
TCATCGTCCTTGGTGATGTACGAGTACTCAGCCAAATTCTGAACGAGCGT
CAATCTGTATGCTGAATGAATGTTGGCAGATGGGAAGGATGTTGGTCTTC
CGTTTGTTTGGATCCGGTGCTGGGTGTCTACAAACGCGTTGAAGGACGAA
GCAGGTGAGATGGATGGGTTCAAACCGTTATTGCCTGATGCTCCGGGCCG
GGCCGGATGGTGGGAATATCGTGCCCTATTGTCGAATTCTTGCGGCCATG
ACCGATGTTCAGGGAGTCTTTCCCTCGTCAGATATGTCGGTATTATCGTT
AGGTTGCTCAGTTGACTTACTTTATATACCTGGTGCGTGTTTTTCAGCCG
TTTATGCGGAGCACTTTTGGATCAACATTGCTGTTACTTTGTCCTGCCCC
CGCCGCGAACAGCAATCGTGAAGCCTCATTTTCTCCTGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig757:21446..22486+

>mRNA_P-littoralis_Contig757.11.1 ID=mRNA_P-littoralis_Contig757.11.1|Name=mRNA_P-littoralis_Contig757.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig757:21446..22486+ (Pylaiella littoralis U1_48)
GCACTGCTGCTGAGGTCGCGCAATAGTGTAACGAAAGGCTGTCTATACGG
GGAAGATTCTGGTGCCTGCCCAGTTACAGACAGACGTCCAGAGGAAGGCT
GCTGGCTGCTTCACCGCGATGACGATGGAGATGGGAAGGATGTTGGTCTT
CCGTTTGTTTGGATCCGGTGCTGGGTGTCTACAAACGCGTTGAAGGACGA
AGCAGCAATCGTGAAGCCTCATTTTCTCCTGGTG
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