mRNA_P-littoralis_Contig756.8.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig756.8.3
Unique NamemRNA_P-littoralis_Contig756.8.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig756.8.3 vs. uniprot
Match: D7G904_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G904_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 4.450e-123
Identity = 205/268 (76.49%), Postives = 226/268 (84.33%), Query Frame = 2 
Query:   95 MLSSPSAGGMRLAGSYAHRGSPGVVRRTASKPISIIRSTSVPAQLQDRSQAGDPEAGGGSGGKTTSRRGLHLRDRSLQHDFNSAVVGGPNGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQADVESFTSDCGALSTSLKANRLYATSCPANLGAHFGRPPGSKLNSMSVLKEGAFDED---SADDGTPEPKSMTALSILESLAPTQAPAEAAAPVDGLSVDAESVESVADSA-EGSPVEDDVFELEGLDGVNEDLGAVSFSGAG 886
            MLSSPSAGGMRLAG+YAHRGSPGVVRRTAS+PISIIRSTSVPAQLQDR+QAGDP+  GGSGG   +RRGLH RDRSLQHDFNS   GG NGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQAD  SF SDCGALSTSLKANRLYATSCPAN+GAHFGRPPGS+L SMSVL EG+ DE+   +A++G    K +TALSILESL+ T A     APVDG  VDAESVES+ +   E  P+EDDVFEL+GL+GVNE+L A+S S AG
Sbjct:    1 MLSSPSAGGMRLAGNYAHRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGDPDPEGGSGGNPANRRGLHTRDRSLQHDFNSGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQAD-NSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGSRLQSMSVLAEGSLDEEEEEAAEEGAEASKRITALSILESLSQTPA-----APVDGSRVDAESVESLTNIVDERLPIEDDVFELDGLEGVNEELEALSLSEAG 262
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig756.8.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G904_ECTSI4.450e-12376.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig756contigP-littoralis_Contig756:30026..32957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1598
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002420.1
Cds size861
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig756.8.3prot_P-littoralis_Contig756.8.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig756 30063..32257 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791560.8195949-UTR-P-littoralis_Contig756:30025..300621680791560.8195949-UTR-P-littoralis_Contig756:30025..30062Pylaiella littoralis U1_48UTRP-littoralis_Contig756 30026..30062 +
1680791560.902418-UTR-P-littoralis_Contig756:32257..329571680791560.902418-UTR-P-littoralis_Contig756:32257..32957Pylaiella littoralis U1_48UTRP-littoralis_Contig756 32258..32957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791560.8341644-CDS-P-littoralis_Contig756:30062..301861680791560.8341644-CDS-P-littoralis_Contig756:30062..30186Pylaiella littoralis U1_48CDSP-littoralis_Contig756 30063..30186 +
1680791560.84581-CDS-P-littoralis_Contig756:30423..307311680791560.84581-CDS-P-littoralis_Contig756:30423..30731Pylaiella littoralis U1_48CDSP-littoralis_Contig756 30424..30731 +
1680791560.8633442-CDS-P-littoralis_Contig756:31128..311941680791560.8633442-CDS-P-littoralis_Contig756:31128..31194Pylaiella littoralis U1_48CDSP-littoralis_Contig756 31129..31194 +
1680791560.8747122-CDS-P-littoralis_Contig756:31609..319181680791560.8747122-CDS-P-littoralis_Contig756:31609..31918Pylaiella littoralis U1_48CDSP-littoralis_Contig756 31610..31918 +
1680791560.8854263-CDS-P-littoralis_Contig756:32203..322571680791560.8854263-CDS-P-littoralis_Contig756:32203..32257Pylaiella littoralis U1_48CDSP-littoralis_Contig756 32204..32257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig756.8.3

>prot_P-littoralis_Contig756.8.3 ID=prot_P-littoralis_Contig756.8.3|Name=mRNA_P-littoralis_Contig756.8.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=287bp
MENISEEAAAKNQDSQLSAMLSSPSAGGMRLAGSYAHRGSPGVVRRTASK
PISIIRSTSVPAQLQDRSQAGDPEAGGGSGGKTTSRRGLHLRDRSLQHDF
NSAVVGGPNGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQADVESF
TSDCGALSTSLKANRLYATSCPANLGAHFGRPPGSKLNSMSVLKEGAFDE
DSADDGTPEPKSMTALSILESLAPTQAPAEAAAPVDGLSVDAESVESVAD
SAEGSPVEDDVFELEGLDGVNEDLGAVSFSGAGEVG*
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mRNA from alignment at P-littoralis_Contig756:30026..32957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig756.8.3 ID=mRNA_P-littoralis_Contig756.8.3|Name=mRNA_P-littoralis_Contig756.8.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=2932bp|location=Sequence derived from alignment at P-littoralis_Contig756:30026..32957+ (Pylaiella littoralis U1_48)
TGCTGTGCCCTCAATCGAACGACTACCATTGCCGTACATGGAAAACATCT
CCGAAGAGGCAGCCGCCAAAAATCAAGACTCCCAATTGTCAGCTATGCTT
TCCAGCCCCTCTGCCGGGGGCATGCGATTGGCAGGAAGCTACGCCCACCG
TGGCTCTCCCGGTGAGAATGAGTACACGTGCAGCAAGATTTTACTCGCAT
TCTTGCGAGATTCCACGATTCGCGACCGACCATCATACGATACGATCAAA
CCGACAAGCAAGCGGCGGGACAATACGTACGTGCATGACCATGCAGATTT
TCCTCCGAATCGTTCGTGTTTGGTACTCCCGTCAGTTTGAAGATCAAGCC
TAAATGACGGTCATGTCTGGGACGAAAAAATTCACTTTGATTGACCAGGT
GTCGTTCGGCGGACGGCGAGCAAACCCATCTCCATTATACGCTCGACATC
GGTTCCGGCGCAGCTTCAAGATCGATCGCAAGCCGGCGACCCGGAAGCGG
GAGGGGGTAGTGGAGGCAAAACTACAAGTAGGAGGGGGCTGCATTTAAGG
GACAGGAGTTTGCAGCATGATTTCAACAGCGCAGTGGTGGGAGGCCCGAA
CGGGATTGTGCAGTCCCTCCCTCCTCCACAAGCTCCGCTCCTGGCAGGCT
CCCTTCCTCCGTCGCGTTTTTTGGATGACTTGCCACCCCTCAGCCTTGGG
CCGCAGGTGTGAGGGACACGCGCGGGACGACACGCGGCGTGGTCATCAAC
GCAACGTGTTTTCTTGTTCCGATGGGAAAGAGAGGCTCCAGTGAGCATGA
TACAACTTTTTTGTAAACGTCCTTCTGACATTAGTGTAGATAAAGCCTCA
GAGGTGCGATGCAACAACCGCTGTGTTATTATGTGCGCCGCCCGAGCGAG
TGAAATTAGCTGCTAGGAAATGACTCATGCGACCGACTTCTCGTTGATTC
CCGTTGTTGTTTTGGCGAGCCTCCCAGTTAAATTCGTCCGCTATCAAGGC
ACATTCAGTATCGTTGTTTTTCCTACGGGTCTGTGCCGTCGACGTATGAT
CCACCTTCGCTGAAAATCACCAACTGCTGCCACCCATCGCTCGCGCGGCG
CAGGCTGATGTCGAATCGTTCACGTCCGATTGCGGTGCGCTCTCGACGTC
GTTGAAGGCAAACCGTCTGGTGAGATGGCCTGTCTCTTCTTGTGTGCAGT
CCAACAGGGTTTTCTTGTGTGCAATCCAACAGGGATTCTCACGTTTCTCT
GCGGTATCTCGCTGTTTGTACCAACATGCAAGCCTCGCACAGCATACAGC
AGTGGCATGTGCAGGGAGTGCCAAGAGGTGGCAGTTTCGTGGTGGTGGGC
TCAAGATTATTGCTGCTCCATTTTTAATTTTTAATTTTAAGATCTCCCAT
GCTCACTTTTTGGCCTGTCTTCACAGATATCTTCCAGTTTTGATGCGTTG
TTGTACCACACGAAACTTCACTTATCTGCTTTTGGTGACATGTGACCATG
TTCTCTCCCTGCGCTTCCCCCCGCCGCCTTCATGCTGCTGCGCGTCGGCC
ACGTTGGCGCTGCCCGTTGATTTGTCAAAAACAGTACGCAACGTCTTGCC
CGGCGAACCTCGGAGCGCATTTTGGTCGTCCCCCAGGATCGAAGCTCAAT
TCCATGTCTGTTCTCAAAGAGGGGGCGTTTGATGAGGATAGTGCGGATGA
CGGAACACCGGAGCCGAAAAGCATGACGGCTCTGTCGATCTTAGAGTCGT
TGGCGCCAACGCAAGCGCCCGCAGAGGCTGCAGCGCCCGTCGACGGCTTA
AGCGTGGACGCAGAATCTGTCGAATCTGTGGCAGACAGTGCGGAGGGATC
GCCCGTTGAAGACGACGTCTTCGAGCTGGAGGGACTTGATGGGGTGAGAA
CTGTAACTATTCTTCTGCTCTTGTTTGCCAGGCTGATACTTGAAAGTCGA
AGGAAGAAAGAGCCCAGGCCACAGAGAACTTCGTAGATGAGAGCGCCTAA
CCCGGCTTGGCCTTATTGCCTTGAACTGAAAAAACTACGAATGTTGCCCA
CGCCATCTTGTGCGATACTCAGGGGTTTTACAGATAATTCCACTCGGCTT
CCAATGGGGTACTTTTACGCCGGGTGTTCCCCTCCCACAACCGCAAAAAC
CAAAAAGCATATCCGATTTAATCCGCAGGTGAACGAAGATCTGGGGGCTG
TTTCTTTCTCCGGAGCCGGCGAAGTTGGGTGACCTTTCCGCGCCATCAGC
TATGACTTGCCCTGAGCTCAGGCGTGGCGCGGTGGGTCGCTCGAGTATAG
TATCGAGTATTTGGGGGGAACGTGTAATTACGTGCTCTTTGAGCCGCCCA
GGTGCGCGCTCGGGGCTCCCAGCTGGTGCTGCACGGCCGTGTGTAGAGTT
TACCCCGAGAGGAACGTAAAAACGGGGCTAATTGTGAATTTTAGCGGGAC
AACGAAGTGGAATGGGGTATTTTATTTGTCTTGTGTATTTTGCGACCGGC
AGTGAGCGTTTTTGTTTTTCCGTGCAGTGGGATGTGGGATGAGTTCACTA
TTTATTTTTGCTTTTATTTTTTCCGTCATGCGCGCAGTCTCCATTTGTGC
GTTCCAGAGCGTAGAGAGATCGCATTTTAATGTGAACAGGATAGATCACA
ATTTTATAGAAAAAAGTCGAGGCTTGATGGTGTTGTACAAGGCGAAGTAG
TTGGTACACTGATGTCGTGGGATTGGGGGCGAACCACTACCGTAAAGGAC
GAAGCAAACGCCCCACGAGGCGATCGCAAAAATAGTTTGGAAAGAGGCCC
CGGCGGGCGTCCGCTCCGTACGCGGGGAGCCCCTACATGCAGAACGTATC
CGCGAGCGCATTTGTGTAGTACATGGTACAGCGACCCCTTTGAGAACCTT
GCAGGGCTCTAATTCATTTTGCTTTTTTCTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig756:30026..32957+

>mRNA_P-littoralis_Contig756.8.3 ID=mRNA_P-littoralis_Contig756.8.3|Name=mRNA_P-littoralis_Contig756.8.3|organism=Pylaiella littoralis U1_48|type=CDS|length=861bp|location=Sequence derived from alignment at P-littoralis_Contig756:30026..32957+ (Pylaiella littoralis U1_48)
ATGGAAAACATCTCCGAAGAGGCAGCCGCCAAAAATCAAGACTCCCAATT
GTCAGCTATGCTTTCCAGCCCCTCTGCCGGGGGCATGCGATTGGCAGGAA
GCTACGCCCACCGTGGCTCTCCCGGTGTCGTTCGGCGGACGGCGAGCAAA
CCCATCTCCATTATACGCTCGACATCGGTTCCGGCGCAGCTTCAAGATCG
ATCGCAAGCCGGCGACCCGGAAGCGGGAGGGGGTAGTGGAGGCAAAACTA
CAAGTAGGAGGGGGCTGCATTTAAGGGACAGGAGTTTGCAGCATGATTTC
AACAGCGCAGTGGTGGGAGGCCCGAACGGGATTGTGCAGTCCCTCCCTCC
TCCACAAGCTCCGCTCCTGGCAGGCTCCCTTCCTCCGTCGCGTTTTTTGG
ATGACTTGCCACCCCTCAGCCTTGGGCCGCAGGCTGATGTCGAATCGTTC
ACGTCCGATTGCGGTGCGCTCTCGACGTCGTTGAAGGCAAACCGTCTGTA
CGCAACGTCTTGCCCGGCGAACCTCGGAGCGCATTTTGGTCGTCCCCCAG
GATCGAAGCTCAATTCCATGTCTGTTCTCAAAGAGGGGGCGTTTGATGAG
GATAGTGCGGATGACGGAACACCGGAGCCGAAAAGCATGACGGCTCTGTC
GATCTTAGAGTCGTTGGCGCCAACGCAAGCGCCCGCAGAGGCTGCAGCGC
CCGTCGACGGCTTAAGCGTGGACGCAGAATCTGTCGAATCTGTGGCAGAC
AGTGCGGAGGGATCGCCCGTTGAAGACGACGTCTTCGAGCTGGAGGGACT
TGATGGGGTGAACGAAGATCTGGGGGCTGTTTCTTTCTCCGGAGCCGGCG
AAGTTGGGTGA
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