mRNA_P-littoralis_Contig755.14.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig755.14.2
Unique NamemRNA_P-littoralis_Contig755.14.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig755.14.2 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.910e-31
Identity = 62/103 (60.19%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  314 FEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGW 622
            F D+ +    N+ A+ +   +  GL GDT+R V+ V +RGDALFNGRLDWLG LWA VKGL PT  LI+A W G+VDG AA+ HRKADTK ATAFTL RFA W
Sbjct:   92 FGDIQDNTPANDAARGMRTLLVGGLHGDTNRVVAAVHKRGDALFNGRLDWLGELWAVVKGLQPTADLILARWKGHVDGTAAVSHRKADTKAATAFTLARFADW 194
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BLAST of mRNA_P-littoralis_Contig755.14.2 vs. uniprot
Match: A0A6H5KFA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 8.050e-30
Identity = 64/114 (56.14%), Postives = 74/114 (64.91%), Query Frame = 2 
Query:  284 EAAVQYMRGAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALF-NGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGW 622
            E   + ++GA +D P    +  L   + + I  GLRGD D     V ER D LF  GR  WLGPLW +VK LPPTT LI   W G+VDG+AALEHRKADTK ATAFTLTRFAGW
Sbjct:    4 EHIARCIQGAKDDDPF---LQNLRVYVRSQIASGLRGDLDGVKKKVWERVDPLFFEGRRRWLGPLWKKVKDLPPTTRLIPDAWNGHVDGVAALEHRKADTKAATAFTLTRFAGW 114
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BLAST of mRNA_P-littoralis_Contig755.14.2 vs. uniprot
Match: A0A6H5K4F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F6_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 7.590e-21
Identity = 53/95 (55.79%), Postives = 59/95 (62.11%), Query Frame = 2 
Query:  341 VNELAQNIANHIEDGLRGDTDRAVSVVLERGDALF-NGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGW 622
            V  L   + + I  GLRG  D     V ER D LF  GR  WLGPLW +V+ L PTT LI   W G+VDG+AA EHRKADTK ATA TLT  AGW
Sbjct:  175 VQNLWVYVRSQIASGLRGGLDGVKRKVWERVDPLFFEGRRRWLGPLWKKVEDLAPTTRLISDAWNGHVDGVAAFEHRKADTKAATASTLTLNAGW 269
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BLAST of mRNA_P-littoralis_Contig755.14.2 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.480e-9
Identity = 39/76 (51.32%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:  616 WLGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEEELYNFFVEERKNAIAIK-LEYPSQKYLIAKPRARV 840
            W G RL  WIN P VLE GFK   EE ALHYL CIINHVEE      V ER      +    PS++Y I++PR +V
Sbjct:  111 WEG-RLTAWINQPEVLEQGFKMYPEEKALHYLSCIINHVEEVGVVQGVHERAEEFRGRGALVPSERYQISRPRGQV 185
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig755.14.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE1.910e-3160.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFA5_9PHAE8.050e-3056.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4F6_9PHAE7.590e-2155.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K201_9PHAE9.480e-951.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig755contigP-littoralis_Contig755:37821..39660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size840
Hectar predicted targeting categoryother localisation
Exons5
Cds size600
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig755.14.2prot_P-littoralis_Contig755.14.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig755 38353..39614 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791559.7284641-UTR-P-littoralis_Contig755:37820..379221680791559.7284641-UTR-P-littoralis_Contig755:37820..37922Pylaiella littoralis U1_48UTRP-littoralis_Contig755 37821..37922 -
1680791559.73843-UTR-P-littoralis_Contig755:38260..383521680791559.73843-UTR-P-littoralis_Contig755:38260..38352Pylaiella littoralis U1_48UTRP-littoralis_Contig755 38261..38352 -
1680791559.7981794-UTR-P-littoralis_Contig755:39614..396601680791559.7981794-UTR-P-littoralis_Contig755:39614..39660Pylaiella littoralis U1_48UTRP-littoralis_Contig755 39615..39660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791559.7519395-CDS-P-littoralis_Contig755:38352..386701680791559.7519395-CDS-P-littoralis_Contig755:38352..38670Pylaiella littoralis U1_48CDSP-littoralis_Contig755 38353..38670 -
1680791559.7632458-CDS-P-littoralis_Contig755:38881..390001680791559.7632458-CDS-P-littoralis_Contig755:38881..39000Pylaiella littoralis U1_48CDSP-littoralis_Contig755 38882..39000 -
1680791559.7743928-CDS-P-littoralis_Contig755:39204..393051680791559.7743928-CDS-P-littoralis_Contig755:39204..39305Pylaiella littoralis U1_48CDSP-littoralis_Contig755 39205..39305 -
1680791559.7876418-CDS-P-littoralis_Contig755:39552..396141680791559.7876418-CDS-P-littoralis_Contig755:39552..39614Pylaiella littoralis U1_48CDSP-littoralis_Contig755 39553..39614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig755.14.2

>prot_P-littoralis_Contig755.14.2 ID=prot_P-littoralis_Contig755.14.2|Name=mRNA_P-littoralis_Contig755.14.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=200bp
MTKNMTAVYLLPQPVWLGCSGRPARRTRRRTRRRRRRRRSDDAENQRKKQ
PVSASRGEESEEDNDCMSVQDSDDEEETDEAAVQYMRGAFEDVPNAGKVN
ELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGPLWAEVKGL
PPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGRDSKPG*
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mRNA from alignment at P-littoralis_Contig755:37821..39660-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig755.14.2 ID=mRNA_P-littoralis_Contig755.14.2|Name=mRNA_P-littoralis_Contig755.14.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1840bp|location=Sequence derived from alignment at P-littoralis_Contig755:37821..39660- (Pylaiella littoralis U1_48)
AGGTGCGGCATGGAAGTAACTGCGCTGCGGGACGCACTCGGACAACATGA
CGAAGAACATGACAGCGGTGTATCTCCTTCCCCAACCCGTATGGTTAGGT
TGTTCGGGGTAAGGTTTTGTTTTGAAAATGTGGGTGTAAAAATTATTGAG
TTGCAGTCCCCGAGACAATGCTATGTAAGCCAAGGCATGGCCCAACTTGG
CGGCCTGACTTTTCGCGTGGTCTCGCCGCACCCCACCTCTCGCCACCTCT
CGCTGCCCAGCAGCTTTATTTTTTGGCCATCGATACCCTTGATCATTACT
GCCATTGCGCCGTTCTGAACGCTTTTTGCATGATGTCTCGCACACTTGAT
GGCAGGCGGCCGGCGAGGAGAACCAGGCGGCGGACGAGGAGGAGGAGGAG
GAGGAGGAGGAGCGATGACGCAGAAAACCAGCGCAAGAAGCAGCCTGTGT
CAGCAAGTATGTTGAAGCCTGGGAGGTTAGAGTCGAATGAGTACGGGTGA
CAAAAAAACGGCGTGTTCTTTTTTCCTTCTTTCGTTATCTAGGAACCATC
GCTTTTCTCTCTTTGCTTTCTCCCACGTCCCCCAAACCTGAACTCGCCTG
ACGAGTGTCTTTGAGTCTCACGCTCTCCTCGTTGCGCTTGCGAATGCTGA
TTGGAGCAAGGTCGAGGAGAGGAGTCTGAAGAAGATAACGATTGCATGAG
CGTGCAGGATTCGGACGATGAGGAAGAGACCGACGAGGCGGCTGTCCAAT
ACATGCGTGGTGCTTTCGAGGATGTTCCGGTGAGAATGGCAGTGCATATT
GTTGCCTGCTCGCACATTTCAGACATCATGCAGCCAATGTTTCCTTTTGG
TGTGACCTCGCATAGTCAGACTGGCACTTGTTGTTTCACTTGTGTTTCAT
CACCATCGCAACGAGAGCCTGTTTGGGATGATATTTTCAATCGCTTTTAT
CTTTTGTTTGTCCGCGGCCGTGTGGTTGACGATGAAGCAGAATGCTGGCA
AGGTCAACGAGCTGGCCCAGAACATTGCGAACCATATCGAGGACGGTCTT
CGCGGGGACACAGATCGTGCCGTGTCGGTGGTGCTTGAGAGAGGGGACGC
CCTCTTCAACGGGCGTCTCGACTGGCTCGGTCCGCTTTGGGCGGAGGTCA
AAGGTCTTCCTCCTACAACGCACTTGATTGTCGCGTGTTGGACGGGCTAT
GTGGACGGACTCGCCGCCCTGGAACACCGTAAGGCTGATACTAAGACGGC
GACAGCGTTCACCTTGACCCGTTTTGCTGGCTGGGGGAGAGACTCCAAAC
CTGGATAAACGACCCCAGTGTGTTGGAGGCAGGGTTCAAGACAGCGCGGG
AGGAGATTGCATTGCACTACCTATGCTGCATCATCAATCACGTGGAGGAG
GTGGGTTGATGCGGTGGTCAATAGGAAGTGAGGAAGACATACCAGACGAA
ATTTGCCCAAGGATTACAATCTCCTTTCCGCAGCCGTAGTTGACTAAGAC
ATAAACTCCATCCTCCCTCGGTACGTTACAGCGCTGTGTATTTTGTATCG
TCGGGGTACGCTATCTTTCTGATTCCTTGTGTGTTGGAGCAATCATCGCT
CCGAGCGCTTAGTTTTGGAGACAACCATTCTGATTTTCTCTTCTATAGCT
TGGACTCGACGGCCACGTAGCTGAGGCACCCTCCCCGTGCCCGCGCTCCT
CTCCTCGAACCGCTCCCCGTCCCCCCCCGTTGCTGCAGGAGTTGTACAAC
TTCTTCGTGGAAGAGCGGAAAAATGCCATCGCCATCAAGCTCGAGTACCC
GAGTCAAAAATATCTGATTGCAAAACCGCGCGCGAGAGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig755:37821..39660-

>mRNA_P-littoralis_Contig755.14.2 ID=mRNA_P-littoralis_Contig755.14.2|Name=mRNA_P-littoralis_Contig755.14.2|organism=Pylaiella littoralis U1_48|type=CDS|length=600bp|location=Sequence derived from alignment at P-littoralis_Contig755:37821..39660- (Pylaiella littoralis U1_48)
ATGACGAAGAACATGACAGCGGTGTATCTCCTTCCCCAACCCGTATGGTT
AGGTTGTTCGGGGCGGCCGGCGAGGAGAACCAGGCGGCGGACGAGGAGGA
GGAGGAGGAGGAGGAGGAGCGATGACGCAGAAAACCAGCGCAAGAAGCAG
CCTGTGTCAGCAAGTCGAGGAGAGGAGTCTGAAGAAGATAACGATTGCAT
GAGCGTGCAGGATTCGGACGATGAGGAAGAGACCGACGAGGCGGCTGTCC
AATACATGCGTGGTGCTTTCGAGGATGTTCCGAATGCTGGCAAGGTCAAC
GAGCTGGCCCAGAACATTGCGAACCATATCGAGGACGGTCTTCGCGGGGA
CACAGATCGTGCCGTGTCGGTGGTGCTTGAGAGAGGGGACGCCCTCTTCA
ACGGGCGTCTCGACTGGCTCGGTCCGCTTTGGGCGGAGGTCAAAGGTCTT
CCTCCTACAACGCACTTGATTGTCGCGTGTTGGACGGGCTATGTGGACGG
ACTCGCCGCCCTGGAACACCGTAAGGCTGATACTAAGACGGCGACAGCGT
TCACCTTGACCCGTTTTGCTGGCTGGGGGAGAGACTCCAAACCTGGATAA
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