mRNA_P-littoralis_Contig751.22.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig751.22.2
Unique NamemRNA_P-littoralis_Contig751.22.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig751.22.2 vs. uniprot
Match: D8LTM5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM5_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 1.380e-68
Identity = 112/138 (81.16%), Postives = 122/138 (88.41%), Query Frame = 2 
Query:  365 GGGAESNALLLRMDFEHAEVQELREWIRRYPFGTTLPVQPFSLVETETGVDVIFRKKPTLGKGSQDGGLCFTVEDRSVDERADLPVCPTLIMRRIADGQEIRKMFAERIVVKAVVKSLAGGDAPPGTKVRTVLHEGLV 778
            GGG ESNALLLRMDFE A+ +ELR+WIRRYPFGT LPVQPFSLVET TGVDV+FRKKPTL +GSQDGGLCFT+ED+   E  D+   PTLIMRRI++GQEIRKMFAERIVVKAVVKSLAG  APPGTKVRTVLHEGLV
Sbjct:   19 GGGEESNALLLRMDFEDADAEELRQWIRRYPFGTALPVQPFSLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPPGTKVRTVLHEGLV 156
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BLAST of mRNA_P-littoralis_Contig751.22.2 vs. uniprot
Match: A0A7S0L9D0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L9D0_9EUKA)

HSP 1 Score: 75.9 bits (185), Expect = 2.240e-12
Identity = 37/114 (32.46%), Postives = 66/114 (57.89%), Query Frame = 2 
Query:  389 LLLRMDFEHAEVQELREWIRRYPFGTTLPVQPFSLVETET----GVDVIFRKKPTLGKGSQDGGLCFTVEDRSVDERADLPVCPTLIMRRIADGQEIRKMFAERIVVKAVVKSL 718
            +LL++     +   L++W+ R PF + LPVQP  ++  +     G+D+ FR+KPT+ K S +GGL F V      E   +     L++ R++ GQ I K F+ER++++ +++ L
Sbjct:   28 VLLKVTLARCDSHGLQQWLLRRPFASALPVQPMLVLPIKDPPPLGIDLTFRRKPTMDKSSSEGGLRFAVSAPGDGEAGVVDGDGILLVTRVSSGQSIGKGFSERVLIEMLLREL 141
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BLAST of mRNA_P-littoralis_Contig751.22.2 vs. uniprot
Match: A0A7S2CIM1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIM1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 7.030e-9
Identity = 39/135 (28.89%), Postives = 66/135 (48.89%), Query Frame = 2 
Query:  410 EHAEVQELREWIRRYPFGTTLPVQPFSLVETETGVD------------VIFRKKPTLGKGSQDGGLCFTVEDRSVDERADLPVCPTLIMRRIADGQEIRKMFAERIVVKAVVKSLAGGDAPPGTKVRTVLHEGLV 778
            E   + EL+ W++ YP+   LPVQP  LV+ E   D            V FR+KPT  KG  DGG+  T+         DL     L +R +++G  + K  +++++ K++++ L      P   + +VLH  ++
Sbjct:   13 EAGGIDELKRWLKAYPYPAVLPVQPM-LVDREWSCDNRPDEPTAETLRVTFRRKPTDAKGPVDGGIEITLVTGVDAADHDL----ALTLRALSEGNYVDKSLSQKLLAKSIIRDLP---RVPKVSITSVLHSAML 139
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig751.22.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTM5_ECTSI1.380e-6881.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0L9D0_9EUKA2.240e-1232.46Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2CIM1_9STRA7.030e-928.89Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig751contigP-littoralis_Contig751:105055..109922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTM5
Model size1911
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue3.83e-74
EggNOG OGs2EA7H@1|root,2SGGG@2759|Eukaryota
Cds size741
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig751.22.2prot_P-littoralis_Contig751.22.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig751 106185..109882 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791555.823182-UTR-P-littoralis_Contig751:105054..1061841680791555.823182-UTR-P-littoralis_Contig751:105054..106184Pylaiella littoralis U1_48UTRP-littoralis_Contig751 105055..106184 -
1680791555.8827412-UTR-P-littoralis_Contig751:109882..1099221680791555.8827412-UTR-P-littoralis_Contig751:109882..109922Pylaiella littoralis U1_48UTRP-littoralis_Contig751 109883..109922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791555.8417358-CDS-P-littoralis_Contig751:106184..1062921680791555.8417358-CDS-P-littoralis_Contig751:106184..106292Pylaiella littoralis U1_48CDSP-littoralis_Contig751 106185..106292 -
1680791555.8524828-CDS-P-littoralis_Contig751:106992..1071341680791555.8524828-CDS-P-littoralis_Contig751:106992..107134Pylaiella littoralis U1_48CDSP-littoralis_Contig751 106993..107134 -
1680791555.862265-CDS-P-littoralis_Contig751:109189..1092701680791555.862265-CDS-P-littoralis_Contig751:109189..109270Pylaiella littoralis U1_48CDSP-littoralis_Contig751 109190..109270 -
1680791555.8722086-CDS-P-littoralis_Contig751:109472..1098821680791555.8722086-CDS-P-littoralis_Contig751:109472..109882Pylaiella littoralis U1_48CDSP-littoralis_Contig751 109473..109882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig751.22.2

>prot_P-littoralis_Contig751.22.2 ID=prot_P-littoralis_Contig751.22.2|Name=mRNA_P-littoralis_Contig751.22.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=247bp
MCRCQPATAGVAIVIACFSLLRYETSAFISAHSPLLPRGATRATPVTWGQ
GSNLRGFGHSCCLAPRKSLLCVRATAIVYQHCQSSSYAFHVKNKDRAPLV
ILSAAGDDGGGAESNALLLRMDFEHAEVQELREWIRRYPFGTTLPVQPFS
LVETETGVDVIFRKKPTLGKGSQDGGLCFTVEDRSVDERADLPVCPTLIM
RRIADGQEIRKMFAERIVVKAVVKSLAGGDAPPGTKVRTVLHEGLV*
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mRNA from alignment at P-littoralis_Contig751:105055..109922-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig751.22.2 ID=mRNA_P-littoralis_Contig751.22.2|Name=mRNA_P-littoralis_Contig751.22.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4868bp|location=Sequence derived from alignment at P-littoralis_Contig751:105055..109922- (Pylaiella littoralis U1_48)
GCTGTTCGTGCATGCTGCACACAGTCTAGATATCACCAAGATGTGTCGAT
GTCAACCAGCAACAGCAGGTGTAGCGATTGTCATCGCCTGTTTTTCCTTG
CTGCGTTATGAGACTTCAGCATTTATTTCTGCACACAGCCCGTTGCTCCC
ACGCGGAGCAACCCGGGCAACACCAGTAACATGGGGACAAGGAAGTAATC
TCAGAGGGTTTGGGCACAGCTGCTGCTTGGCACCACGGAAATCACTGCTA
TGTGTACGCGCTACTGCTATCGTATACCAGCATTGTCAATCGTCCAGCTA
TGCATTTCACGTGAAAAACAAGGATAGAGCTCCGCTAGTGATTCTTTCTG
CAGCAGGCGACGACGGAGGTGGCGCAGAGAGCAACGCCCTGCTGCTGAGG
ATGGACTTCGAGCATGCAGAGGTGCAAGAGCTGCGCGAATGGATTCGAAG
GTATGCGCCTCGCACCTCGCACCCAAGCAGATAAAAACGTTCGATGCTGC
TGTGCACAGCAGTAAAGTTTTGAAGCGAGTTCAACGCGGGACGACCATGA
TGGCCAAGTCCTCGCTTCGTTTCGACCCCCCATATCTTCAGAGGGCTTCG
TGCTCTCTCCGACCTGATCCGAACGGCCAACAAACTTTACTGCCCTTAGC
AGGTATCCTTTCGGGACGACTCTGCCGGTGCAGCCGTTCTCTTTGGTGGA
GACGGAAACAGGCGTGGATGTCATCTTCAGAAAGTGAGGACATCGATGAG
AACAGTCCTACACAGCTGCCTGCATTCCTACAGCAGTATCGCAGAATGCT
AAGGCCACCGGAATGGGGTGCAAATGACCTGCAGGCTTTCGACAAACGCC
TGATTATTCTGGGTTTCCAAAGTCTGTCTCTAGCACGAACCTACCACCGC
AGAATGCTCCCGGAGGCAGTCGCTGTGAGCAGTAACTAGTGTCTTAGATC
CAAGTCCTTGCGACATGCTACAGATTCACCGTTTGCGATTTTCGAAACGA
GCCCTCCTTCATCGAGTTCTGCGAGCTACGAGGCGTGGTTCAGATGCTGC
TGTAGCAGCCATATTTTTGAACGCTACAAAGCGTACGTGAGTACCTGCGA
CCGCTTATTCGGCACAATGCTCTCCTCACATACCCAAGCCATCGCCGTGA
CTGATTTGGAGGCCGTAGGTACTCACGTATGCCCAGTGTTTTCGGGTGCT
GCGTGGCGGAAGCAAATATATCTGCTACAGCAGCATCCGCACGTGTGCTG
CTTTGGCTTTTTTTTGTTTTATACCGACAAAAGCTTTGGGCGGGTACCAC
GTGACGAAACTCTGAGCCCCTCTCAGATTTGTATATTTGTCCTGCGAAGA
CCATTCGGGATCATGACCTTTGTCGCCGGTGGTGCTCCTCACACAGACCC
CGGCTCGCTACGATATCGACAGGAGGCCTCAAGAGGTTGTGTTCTACCTT
CTCCAGTAGTTTATATACTCGAAGTATGATTTTGCTCCAAACTGCAGAAA
TGCTGCGCCATCGCAACTGGAAGCAAGCCGCTTTTCTGTGCGTCCGGAGC
TCGTTTTCAGCTCTAAGGAGACAAACTTCGCGCCAAGATTGTGCACTCGT
AGAATCAACTACATAGGTTGAAACTCGCAGGGTGTGTACCTTGGTGGATG
TACTGCTCAACAAAAGTTGGTAAAAATTTGGATCAGCACTACAGCGCTGA
CGATGGGCTTCCAAAAGCTCCCTAAAATCGACCCAAACCAGTCTGAACTC
CAGTAGCTTACAAGGTTGAACACTTTTAAGCGAGTACAACAAAATGTCTA
CCTCCGAAAATTTAGCCAACATTTAATCGTTTCGTGCTCCAAAAAACTCT
AAATCAAAGTTGTGCACTCGTAGAATTGGCCAAATCGACTGGAACTCGGA
GGTTGTGTAGCTTGGTCGATGCACTCCGCATAAAACGTTGGTATAATTTT
GGGTCAGCACTACAGCTCGCGAACCAGCAGATTGATGTACACGTGTCACA
GGATAATCGACGTTGGGAGCTCCGTGCAATGACAACTTTCGTCACTATAA
AAAAAAAACGGGCGATTTTCTATCGGCGGCAGCACGTGTGTCCGAACCAC
GCCTCGTAGCTCACAGAATTCGATGAATAAGGGCTCGTTCCAAAAACCGC
AAACGGTGAATCTGTAGCATGTCGCAAGGACTTGGATCCAAGACACTGGC
TATTGCTCACAGCGACTGCCTCCGGGAGCATTCTACGGTGGTAAATTCGT
ATTAGTGATAGGCTTTGGAAACCCAGAATAATCAGGCGTTTCTCGAAAGC
CTGCAGGTCGTTTGCACCCCGTTTCCCGGTGGCTCTAATGTTTACAGCAG
TATATGTGTACGTGTTTGATAGTCGTTTCAAAGCAAAGTTCAGACGTTGT
TCGCTGTTCTCTTGAACTGTGCCCTTCAGTTGTCTTGGCTCATGTGCGAG
TTCCTTCCGCCTGTAGCACATCGAATATCACAGAGGTGCTTAAATAGCTA
TAGCTAGTGAACGTCCAACCCGCCTTCATGCTCGATTATTTTTTTCGTCG
CTATTCTTTTGAAAGGAGAAACGGTTCGTACCGGTCCAGTCGTTCTCCTT
GAGCTAGATCAACGTATTTCCCACGATTTAATGTACTTCTGTACAGAGTT
ATGCAGTCCGTGTTCCCCGCTTTCCGCCCAAATTTAGAGAAAGACATTTA
GTGCCCGCAGTTTTCCTAATGGTCAACAGCAGTGGCGGGGAATGTTAGTG
GCTGCTCAATCGCCGTGGCCTGTTCAAACCACATCCAGAAAACCGACTCT
CGGGAAAGGTTCGCAAGACGGTGGACTTTGCTTCACTGTGGAGGACCGCT
CCGTCGATGAAAGGGCCGACCTACCCGTCTGTCCAACACTGATAATGCGG
CGCATTGCTGACGGACAAGAGATCCGAAAGGTGATCAAATTTTAGATTTT
GAGCTAGGTGCTGATACATTCGCTGTCTTCCTGCTTTGGAGTCATTTTTC
TCTCTTGGGGTACGATGCAAAGTACAACTCGCGTAGGATAGAACGCGATG
CACACAAACATGGTTGGGGCGAAAATCAAGGATGTGGAGTGTGTGAGTCG
GATTGACCCCCAGCGAGAGTGAGGTCCGGGTTGCCTTGCCGCGTCTTTGC
TCCGAGACCGTCATTCCAAGAACAGCAGCCGAAGGCTGCAGCTTCGAAGA
CAACGAGCGCCTCAGAACGGAGACATTGGCTTCCTCCCGAAGCACTGCCG
TGACGCCCACCATGAGCCTGATACCGCAAAAGTTAGTCTTCTCGACACCA
CGCTGGGGGTGTCGGTACGAGTGCCATCCCGCAACACTTTTAGCCACCAT
GCTTGCATCGAGCCGCCGACCCGCACCCACACCCGTGTGAGAGAATATCA
GGCCGCGTGAGCGTAGACAAACCACAGATCCGTGAGGTTTGATGTAAAGC
AGACGGCGTGGACGTCGGAACGGCGCGCCGGGTGACGCCAAACACGGAGA
CGCCCCTATTTTATCGTGGCTCTCATTCATGGTCAGTTGTCCAGCCAGAG
AGAACGCCGAAAAACGACAATATTGGACCAAATTCCGGACCTGATTTGTT
TTCAACCCCTTGTTGTTTTTTCTGCTAAAGATGTTCGCGGAACGCATCGT
GGTGAAGGCGGTTGTGAAGTCATTGGCGGGAGGCGACGCACCTCCGGGAA
CAAAAGTACGCACGGTGCTGCATGAAGGCTTGGTCTAGGACTGAGCGCAC
CACCACCCAGCAACCGCCCACCTGGCGTGACGGTCATGTTTTTTGTTCCT
CAGCTGGGAACCAACATACACCGTATTGGATTAGTGTGTTGTTCAAAACC
CAACACACACGAGACTGGCGGTAAACCAATGTCGCAATGCTTGTAGAATA
GCGCCCCGATGCCCGAAAATTCTACCGCCAGGGCTGTTCAGTGAACGGGC
GTTCTGTGCAACAGTAGTACGGCCATATGCGTGGGTCTTCTCTGTTGTTG
CCTGTGCAATAACTGTTTGCGGTAGTCATCCGCTTGACGAGAAGTTGCTC
TATCTTTTTTTGCTTTCAGTCTTGTTACTGTTTTTTTCCGACCATCTAGT
ACCTCCTTCATCTTCTGGGTAACTTGTAGTTCAACTGCGGTCAAGTCACG
TTGAAGCCACTAGACCGACTTTGTGTGCACCCCTTTTCTCCGGCTGTGTG
TCCTGTTTTCTGTTTGTTTGTGGGATCCTTCTATTTAGGCGTTCAGTTTG
TATTAGATTTGCCACCATGGACTATTGTTGCTGTAAAAATATTTTTGTTG
AGAAGCAGTCCACGAGTGCAGCGAAGTGTGACTTTGGTGTGGAACTGCTT
CGAATTCCATACCGTCTTGTTGAGGTGTGCGTGGATGTGCGAATAAATAA
AAAAAAAGGGCGGAGATAGGGGTGCCTTTCTTTAATTTCGGAGGTTTTGG
TGTCTGTCTGTGTGTCTGTGTCCGAGATAATGGCCACATTTTGCAACACT
TTGGCACCAGGTCAGCACAGATCGTTACGACCAAGTGCTTGAACTGATGA
GGTAAATAGCATCTTGCCACTGCTGCTGGGTTCACCGCAGCCCGTGTCCT
GTGCGCACAGCTATGTCGGAGGCGCGTTATATTCGGTATCCCTTTTTTGT
GAAAAATGACGAGAGGTGTTATTTTGTGTTCGTTGTGCTGGCGGAACACC
ACAACAACAGCTGTTCTGCTGCTGCTGCAGCGCTGCAGCCACGGTTCATA
TACGCCACCAAACAGCAACGCACACGGCTCAACGCATTTATTTGAGAAGC
GGCCCTCCAACGCACACTGCTTCTCAACCCCGATCCACGAGTACGCGGCA
TGGGTGCTATGCCAGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig751:105055..109922-

>mRNA_P-littoralis_Contig751.22.2 ID=mRNA_P-littoralis_Contig751.22.2|Name=mRNA_P-littoralis_Contig751.22.2|organism=Pylaiella littoralis U1_48|type=CDS|length=741bp|location=Sequence derived from alignment at P-littoralis_Contig751:105055..109922- (Pylaiella littoralis U1_48)
ATGTGTCGATGTCAACCAGCAACAGCAGGTGTAGCGATTGTCATCGCCTG
TTTTTCCTTGCTGCGTTATGAGACTTCAGCATTTATTTCTGCACACAGCC
CGTTGCTCCCACGCGGAGCAACCCGGGCAACACCAGTAACATGGGGACAA
GGAAGTAATCTCAGAGGGTTTGGGCACAGCTGCTGCTTGGCACCACGGAA
ATCACTGCTATGTGTACGCGCTACTGCTATCGTATACCAGCATTGTCAAT
CGTCCAGCTATGCATTTCACGTGAAAAACAAGGATAGAGCTCCGCTAGTG
ATTCTTTCTGCAGCAGGCGACGACGGAGGTGGCGCAGAGAGCAACGCCCT
GCTGCTGAGGATGGACTTCGAGCATGCAGAGGTGCAAGAGCTGCGCGAAT
GGATTCGAAGGTATCCTTTCGGGACGACTCTGCCGGTGCAGCCGTTCTCT
TTGGTGGAGACGGAAACAGGCGTGGATGTCATCTTCAGAAAAAAACCGAC
TCTCGGGAAAGGTTCGCAAGACGGTGGACTTTGCTTCACTGTGGAGGACC
GCTCCGTCGATGAAAGGGCCGACCTACCCGTCTGTCCAACACTGATAATG
CGGCGCATTGCTGACGGACAAGAGATCCGAAAGATGTTCGCGGAACGCAT
CGTGGTGAAGGCGGTTGTGAAGTCATTGGCGGGAGGCGACGCACCTCCGG
GAACAAAAGTACGCACGGTGCTGCATGAAGGCTTGGTCTAG
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