mRNA_P-littoralis_Contig750.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig750.4.1
Unique NamemRNA_P-littoralis_Contig750.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig750.4.1 vs. uniprot
Match: D7FUU8_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUU8_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 3.030e-105
Identity = 173/218 (79.36%), Postives = 189/218 (86.70%), Query Frame = 1 
Query:  208 MPNVQALAGTPHEPHLRLLETFAYGTYADAQAKADQLPKLTDAQVEKLRMLSVVSLAHTSKVVEYATMKAALGMDNVRHLEDLIFDTMYSGLLQGKLDQRQEVLKVKHAMARDVRLEDLTTMIKKLGSWASTTQVLLSTLEGSVEAATESRRREVQTARLLAKEAADVKKALGEGGGKQRDDDGYHD----LDERSSGTRRGRSKRNRAGMDFRPRNK 849
            MPNVQALAGTPHEPHLRLLETFAYGTY DAQAKADQLPKLT AQV+KLRMLSVVSLAHTSK+V YA MK ALG+DN+R LED+IFDTMY+GLLQGKLDQRQ VLKVK+AMARDVR+++LTTMI KLGSWASTTQVLL TLEGSV  A ESR+ E Q A  LA EAA+VKK   E  GKQRDDDG+HD    +++RS G RRGRSKRNRAGMDFRPRNK
Sbjct:    1 MPNVQALAGTPHEPHLRLLETFAYGTYTDAQAKADQLPKLTGAQVDKLRMLSVVSLAHTSKLVPYAAMKTALGIDNIRRLEDVIFDTMYAGLLQGKLDQRQAVLKVKYAMARDVRVDELTTMIDKLGSWASTTQVLLETLEGSVTQAAESRKSEAQIAESLAAEAAEVKKNFSESTGKQRDDDGFHDVGFDMEDRSGGMRRGRSKRNRAGMDFRPRNK 218
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BLAST of mRNA_P-littoralis_Contig750.4.1 vs. uniprot
Match: A0A835YQX8_9STRA (PCI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX8_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.950e-58
Identity = 107/192 (55.73%), Postives = 139/192 (72.40%), Query Frame = 1 
Query:   73 SENMAEEGLVQFLVLAKGAKGAACVALIQQVLSNKKLFVFGELLAMPNVQALAGTPHEPHLRLLETFAYGTYADAQAKADQLPKLTDAQVEKLRMLSVVSLAHTSKVVEYATMKAALGMDNVRHLEDLIFDTMYSGLLQGKLDQRQEVLKVKHAMARDVRLEDLTTMIKKLGSWASTTQVLLSTLEGSVEAA 648
            +E+    GL Q+ +LAK AKG ACVALIQ+V+++KK+FVFGELLAMPNVQ L GT HEP+LRLLE FAYG Y D +A    LP+L+DA  EKLRML+VV+LA+TS+VV Y  ++ ALG+ +VR +ED++ D MY+GLLQ +LDQR   L+V+H   RDVR E++ +MI  L  WA  T   L  L   V +A
Sbjct:    2 AEDGGAAGLEQYCLLAKTAKGRACVALIQKVMADKKIFVFGELLAMPNVQGLRGTEHEPYLRLLELFAYGVYGDHKAAGGALPQLSDAMTEKLRMLTVVALANTSRVVPYGKLQEALGVSSVRVVEDVVLDAMYAGLLQCRLDQRAGTLRVQHVTPRDVRPEEIDSMIATLDMWAGATDRALRGLRKGVNSA 193
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BLAST of mRNA_P-littoralis_Contig750.4.1 vs. uniprot
Match: A0A7S2CC19_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CC19_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.970e-54
Identity = 113/216 (52.31%), Postives = 140/216 (64.81%), Query Frame = 1 
Query:   82 MAEEG--LVQFLVLAKGAKGAACVALIQQVLSNKKLFVFGELLAMPNVQALAGTPHEPHLRLLETFAYGTYADAQAKADQLPKLTDAQVEKLRMLSVVSLAHTSKVVEYATMKAALGMDNVRHLEDLIFDTMYSGLLQGKLDQRQEVLKVKHAMARDVRLEDLTTMIKKLGSWASTTQVLLSTLEGSVEAATESRRREVQTARLLAKEAADVKKAL 723
            MAE G  L QF +LAK AK  A V LI+Q L+N+K+FVFGELL M N+QAL  T H  +LRLLE FAYGTY+   A+ DQ P +  AQ EKLR LS+VSLAHT K V Y  ++A L ++NVR LEDLI DT+Y+GL+ GK+DQ   VLKVK A+ RDV+ ED+  MI KL  W      +L T+  S   A   R    +    +A+E  DVKK L
Sbjct:    2 MAEGGAALEQFCLLAKTAKSRAAVELIKQALTNRKIFVFGELLFMDNMQALRDTEHAEYLRLLELFAYGTYSQYLAQRDQYPDMNAAQTEKLRQLSIVSLAHTQKKVPYEVLQAELAINNVRELEDLIIDTIYTGLVTGKMDQTTGVLKVKSAVPRDVKPEDVDAMISKLTDWRDKCDAILKTMAASQAHAAAERDEHAKAKLAVAEEIDDVKKNL 217
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BLAST of mRNA_P-littoralis_Contig750.4.1 vs. uniprot
Match: F0YEG3_AURAN (PCI domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEG3_AURAN)

HSP 1 Score: 192 bits (489), Expect = 2.250e-54
Identity = 105/186 (56.45%), Postives = 132/186 (70.97%), Query Frame = 1 
Query:   82 MAEEG---LVQFLVLAKGAKGAACVALIQQVLSNKKLFVFGELLAMPNVQALAGTPHEPHLRLLETFAYGTYADAQAKADQLPKLTDAQVEKLRMLSVVSLAHTSKVVEYATMKAALGMDNVRHLEDLIFDTMYSGLLQGKLDQRQEVLKVKHAMARDVRLEDLTTMIKKLGSWASTTQVLLSTLE 630
            MAE+G   L QF +LAK AKG A V +IQQ LS+K+++VFGELLAMP+VQAL GT H PHL LLE FA+GTY D +AK D +P LT AQ+ KLR LS+VSLA  S VV YATM+  L +DNVR LED I +T+Y+GLL GK+DQ     +V  A  RDV+L+ +  +  KL +WA+T   L + LE
Sbjct:    1 MAEDGSQALEQFCLLAKSAKGRAVVGIIQQTLSSKRIYVFGELLAMPSVQALRGTEHAPHLDLLEIFAFGTYGDYRAKGDAMPPLTPAQLTKLRQLSLVSLARESAVVAYATMQEELAVDNVRDLEDAIIETIYAGLLSGKMDQMSAEFRVAKAAGRDVKLDAVGDLAAKLEAWAATAGQLSAELE 186
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BLAST of mRNA_P-littoralis_Contig750.4.1 vs. uniprot
Match: A0A7S2UVG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVG8_9STRA)

HSP 1 Score: 191 bits (484), Expect = 1.360e-53
Identity = 105/193 (54.40%), Postives = 131/193 (67.88%), Query Frame = 1 
Query:   97 LVQFLVLAKGAKGAACVALIQQVLSNKKLFVFGELLAMPNVQALAGTPHEPHLRLLETFAYGTYADAQAKADQLPKLTDAQVEKLRMLSVVSLAHTSKVVEYATMKAALGMDNVRHLEDLIFDTMYSGLLQGKLDQRQEVLKVKHAMARDVRLEDLTTMIKKLGSWASTTQVLLSTLEGSVEAATESRRREVQ 675
            L +F++LAK AKG ACVALIQQVL+N ++FVFGELLA PNVQALAGT HE HLRLLE FAYGTY+D       LP+LT AQ  KLR LS+VSLA  SKV+ Y  +   L ++NVR LEDL+ +T+Y GL+ GKLDQ   VLKV    ARDVR  ++  ++ +L  W+  TQ L+  L    E     R+ + Q
Sbjct:   11 LERFVILAKNAKGRACVALIQQVLNNNRVFVFGELLASPNVQALAGTEHELHLRLLELFAYGTYSDYHENRSSLPELTPAQRTKLRQLSLVSLASASKVLRYEELMKELQLENVRELEDLVIETIYVGLVLGKLDQLGGVLKVSAVGARDVRPSEVPHLLHRLQHWSQVTQALVQELGTCAETVVSKRQADDQ 203
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BLAST of mRNA_P-littoralis_Contig750.4.1 vs. uniprot
Match: A0A7S2RP08_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RP08_9STRA)

HSP 1 Score: 191 bits (485), Expect = 9.190e-53
Identity = 103/191 (53.93%), Postives = 135/191 (70.68%), Query Frame = 1 
Query:  103 QFLVLAKGAKGAACVALIQQVLSNKKLFVFGELLAMPNVQALAGTPHEPHLRLLETFAYGTYADAQAKADQLPKLTDAQVEKLRMLSVVSLAHTSKVVEYATMKAALGMDNVRHLEDLIFDTMYSGLLQGKLDQRQEVLKVKHAMARDVRLEDLTTMIKKLGSWASTTQVLLSTLEGSVEAATESRRREVQ 675
            +F +LAK  +G A VALI+Q LS+KK+FV GELLAM N+QAL GT  E HLRLLE FAYGTY++ QA  DQLP+L     EKLR LS+VSLAHT K V Y  ++  L + NVR LEDLI DT+Y+GL+ GKLDQ   +L V+ A+ARDVR E++  MI+KL  W S  + L++ L+ ++    E+R+ E +
Sbjct:   29 RFCLLAKSQRGRAVVALIEQALSSKKVFVVGELLAMDNIQALRGTEFEAHLRLLELFAYGTYSEYQAAKDQLPELNSNMKEKLRALSIVSLAHTKKQVTYTELQQELAITNVRELEDLIIDTIYAGLVDGKLDQANGMLNVRSAVARDVRPEEVGEMIQKLTQWGSDMEQLIAALDKNMAHVNEARQGETK 219
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BLAST of mRNA_P-littoralis_Contig750.4.1 vs. uniprot
Match: A0A7R9UCJ6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCJ6_9STRA)

HSP 1 Score: 188 bits (477), Expect = 7.820e-52
Identity = 96/180 (53.33%), Postives = 131/180 (72.78%), Query Frame = 1 
Query:   91 EGLVQFLVLAKGAKGAACVALIQQVLSNKKLFVFGELLAMPNVQALAGTPHEPHLRLLETFAYGTYADAQAKADQLPKLTDAQVEKLRMLSVVSLAHTSKVVEYATMKAALGMDNVRHLEDLIFDTMYSGLLQGKLDQRQEVLKVKHAMARDVRLEDLTTMIKKLGSWASTTQVLLSTLE 630
            + L QF+ LAK AKGAACVALIQQVL++ K+FVFGELL MPNVQAL GT H+P+LRLLE FAYGT ADAQ   + LP +++AQ  KLR LS++S A T   ++Y  +  AL +DNVR LED++ D +Y+ L+  KL+QR+ V+++   +ARDVR +DL+ + +KL +W   T  +L  L+
Sbjct:   21 DALEQFVSLAKTAKGAACVALIQQVLNHPKVFVFGELLLMPNVQALRGTEHQPYLRLLELFAYGTMADAQGAKEALPTMSEAQEAKLRKLSILSAAQTQGTLDYDQLMPALQVDNVRDLEDVVIDAIYADLIDAKLNQRERVVRIHRCVARDVRSDDLSAIKEKLKAWNRNTSEVLQALK 200
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BLAST of mRNA_P-littoralis_Contig750.4.1 vs. uniprot
Match: A0A4D9D7R0_9STRA (PCI domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7R0_9STRA)

HSP 1 Score: 187 bits (474), Expect = 3.200e-51
Identity = 98/179 (54.75%), Postives = 131/179 (73.18%), Query Frame = 1 
Query:   97 LVQFLVLAKGAKGAACVALIQQVLSNKKLFVFGELLAMPNVQALAGTPHEPHLRLLETFAYGTYADAQAKADQLPKLTDAQVEKLRMLSVVSLAHTSKVVEYATMKAALGMD-NVRHLEDLIFDTMYSGLLQGKLDQRQEVLKVKHAMARDVRLEDLTTMIKKLGSWASTTQVLLSTLE 630
            L QF +LAK AKG ACVALIQQVLS +K+ VFGELLAMPN++AL G+ HEP+LRLLE FAYGTYAD Q +   LP LT  Q+ KL+ L++V+LA   + + YA +   L +D +VR LEDLI +++Y G+L G+LDQR  + ++K A+ RDVRLED+  M+ KL  W +  + LL++LE
Sbjct:   10 LEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHESIPYAVLFRELDIDGDVRELEDLIIESIYMGVLTGRLDQRGGLFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLE 188
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BLAST of mRNA_P-littoralis_Contig750.4.1 vs. uniprot
Match: V9EG37_PHYPR (PCI domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=V9EG37_PHYPR)

HSP 1 Score: 186 bits (471), Expect = 5.770e-51
Identity = 96/167 (57.49%), Postives = 120/167 (71.86%), Query Frame = 1 
Query:   94 GLVQFLVLAKGAKGAACVALIQQVLSNKKLFVFGELLAMPNVQALAGTPHEPHLRLLETFAYGTYADAQAKADQLPKLTDAQVEKLRMLSVVSLAHTSKVVEYATMKAALGMDNVRHLEDLIFDTMYSGLLQGKLDQRQEVLKVKHAMARDVRLEDLTTMIKKLGSW 594
            GL QF +LAK A+G ACVALIQQVLSNKKLFVF ELL MPNV+AL  + H  H  LL  F++GTY D  A+ D+LP LT  Q+ KLR L+VVSLAH  K + Y T+   LG+  VR +ED++ DT+YSGL+QGKLDQ+     VK+A+ RD R ED+  MI+KL +W
Sbjct:   10 GLEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEHMEHYELLRIFSFGTYNDYLARKDELPDLTPQQMNKLRKLTVVSLAHRFKNIPYDTLIQDLGVSTVREVEDILIDTIYSGLVQGKLDQKSRCFVVKYAVGRDTRHEDIDDMIQKLSNW 176
[Close]
BLAST of mRNA_P-littoralis_Contig750.4.1 vs. uniprot
Match: A0A3F2RJW9_9STRA (PCI domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJW9_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.080e-48
Identity = 112/245 (45.71%), Postives = 152/245 (62.04%), Query Frame = 1 
Query:   97 LVQFLVLAKGAKGAACVALIQQVLSNKKLFVFGELLAMPNVQALAGTPHEPHLRLLETFAYGTYADAQAKADQLPKLTDAQVEKLRMLSVVSLAHTSKVVEYATMKAALGMDNVRHLEDLIFDTMYSGLLQGKLDQRQEVLKVKHAMARDVRLEDLTTMIKKLGSW-ASTTQV--LLSTLEGSVEAATESRR-REVQTARLLAKEAADVKKALGEGGGKQRDDDGYHDLDERSSGTRRGRSKRNR 819
            L QF +LAK A+G ACVALIQQVLSNKKLFVF ELL MPNV+AL  + +  H  LL  F +GTY++  A  ++LP+LT  QV KLR L+ VSLAH  K + Y T+   LG+ +VR +ED++ DT+YSGLLQGKLDQ+     VK+A+ RD    D+ +MI+KL +W A +T++   ++T+    E   E  R RE      +A  A++ K + G G   + D   Y D     S  RRG + + R
Sbjct:   11 LEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEYSGHYELLRIFCFGTYSEYAAHKEELPELTPQQVNKLRKLTAVSLAHRYKNIPYNTLMQDLGVSSVREVEDILIDTIYSGLLQGKLDQKSSCFAVKYAVGRDTHHADIDSMIEKLTNWKAKSTEINEKINTILRMAEKREEDERVREESIRNKMAARASERKSSAGSGPNFREDFSLYPD-----SAPRRGAAAKQR 250
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig750.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUU8_ECTSI3.030e-10579.36PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YQX8_9STRA1.950e-5855.73PCI domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2CC19_9STRA1.970e-5452.31Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0YEG3_AURAN2.250e-5456.45PCI domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S2UVG8_9STRA1.360e-5354.40Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2RP08_9STRA9.190e-5353.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9UCJ6_9STRA7.820e-5253.33Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9D7R0_9STRA3.200e-5154.75PCI domain-containing protein n=2 Tax=Monodopsidac... [more]
V9EG37_PHYPR5.770e-5157.49PCI domain-containing protein n=12 Tax=Phytophthor... [more]
A0A3F2RJW9_9STRA1.080e-4845.71PCI domain-containing protein n=4 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig750contigP-littoralis_Contig750:23930..29058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUU8
Preferred nameCOPS7B
PFAMsPCI
Model size1778
Max annot lvl2759|Eukaryota
KEGG koko:K12180,ko:K12818
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000338,GO:0000715,GO:0002009,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0008150,GO:0008152,GO:0008180,GO:0008283,GO:0008356,GO:0009653,GO:0009888,GO:0009987,GO:0010387,GO:0016043,GO:0016333,GO:0019538,GO:0019827,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030718,GO:0030727,GO:0031647,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034399,GO:0034622,GO:0034641,GO:0036099,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046483,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048609,GO:0048646,GO:0048729,GO:0048856,GO:0048869,GO:0050821,GO:0050896,GO:0051276,GO:0051301,GO:0051704,GO:0051716,GO:0060429,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0090304,GO:0098727,GO:1901360,GO:1901564
Exons7
Evalue3.72e-110
EggNOG OGsKOG3250@1|root,KOG3250@2759|Eukaryota
Ec32 ortholog descriptionProteasome component (PCI) domain
Ec32 orthologEc-06_001170.1
EC3.6.4.13
Descriptionprotein deneddylation
Cds size771
COG categoryO
BRITEko00000,ko00001,ko01000,ko03041,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig750.4.1prot_P-littoralis_Contig750.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig750 24856..28071 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791553.6433809-UTR-P-littoralis_Contig750:23929..248551680791553.6433809-UTR-P-littoralis_Contig750:23929..24855Pylaiella littoralis U1_48UTRP-littoralis_Contig750 23930..24855 -
1680791553.7515008-UTR-P-littoralis_Contig750:28071..280821680791553.7515008-UTR-P-littoralis_Contig750:28071..28082Pylaiella littoralis U1_48UTRP-littoralis_Contig750 28072..28082 -
1680791553.765503-UTR-P-littoralis_Contig750:28988..290581680791553.765503-UTR-P-littoralis_Contig750:28988..29058Pylaiella littoralis U1_48UTRP-littoralis_Contig750 28989..29058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791553.6595953-CDS-P-littoralis_Contig750:24855..249571680791553.6595953-CDS-P-littoralis_Contig750:24855..24957Pylaiella littoralis U1_48CDSP-littoralis_Contig750 24856..24957 -
1680791553.676686-CDS-P-littoralis_Contig750:25447..255671680791553.676686-CDS-P-littoralis_Contig750:25447..25567Pylaiella littoralis U1_48CDSP-littoralis_Contig750 25448..25567 -
1680791553.6907535-CDS-P-littoralis_Contig750:26112..262201680791553.6907535-CDS-P-littoralis_Contig750:26112..26220Pylaiella littoralis U1_48CDSP-littoralis_Contig750 26113..26220 -
1680791553.7120333-CDS-P-littoralis_Contig750:26577..267561680791553.7120333-CDS-P-littoralis_Contig750:26577..26756Pylaiella littoralis U1_48CDSP-littoralis_Contig750 26578..26756 -
1680791553.7279708-CDS-P-littoralis_Contig750:27218..273361680791553.7279708-CDS-P-littoralis_Contig750:27218..27336Pylaiella littoralis U1_48CDSP-littoralis_Contig750 27219..27336 -
1680791553.737828-CDS-P-littoralis_Contig750:27927..280711680791553.737828-CDS-P-littoralis_Contig750:27927..28071Pylaiella littoralis U1_48CDSP-littoralis_Contig750 27928..28071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig750.4.1

>prot_P-littoralis_Contig750.4.1 ID=prot_P-littoralis_Contig750.4.1|Name=mRNA_P-littoralis_Contig750.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=257bp
MAEEGLVQFLVLAKGAKGAACVALIQQVLSNKKLFVFGELLAMPNVQALA
GTPHEPHLRLLETFAYGTYADAQAKADQLPKLTDAQVEKLRMLSVVSLAH
TSKVVEYATMKAALGMDNVRHLEDLIFDTMYSGLLQGKLDQRQEVLKVKH
AMARDVRLEDLTTMIKKLGSWASTTQVLLSTLEGSVEAATESRRREVQTA
RLLAKEAADVKKALGEGGGKQRDDDGYHDLDERSSGTRRGRSKRNRAGMD
FRPRNK*
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mRNA from alignment at P-littoralis_Contig750:23930..29058-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig750.4.1 ID=mRNA_P-littoralis_Contig750.4.1|Name=mRNA_P-littoralis_Contig750.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5129bp|location=Sequence derived from alignment at P-littoralis_Contig750:23930..29058- (Pylaiella littoralis U1_48)
CCGCCAATCCGCACCTGGCTCCCACCCTCTCTATCGCCAAAGGTGTGTCA
CCGCTGTGCTACTTCTCAAGGTATGCGACAGAGAATGCGAGTTTCCTTGT
AAAACACACGTGTCGATCGAAATCGTGCCTCCGGCGATCTTTCTGGTCTC
CCGTTTTTCATTGCTGTTGGCTCTTGACAAGACTGTCGAGAAAGCAAATA
AAGATTAAACTCTCCGCGTCTCTCTCAGCAGCAGCAGTAGCAGCAGTACG
TCATGTGTAACAGCATCACCAGCAGCCGCAGTAGCAGCACACGTCATACT
TTGCCGGACCCATCACTTTGCTCTACTGCTGCTCTTATCCTGCTCAGAGT
ACAGGAGTACACGGCATTCACTTTCGATTGGCCGTGGAAGTGTAACTTGT
CCCAGCCGCCAGCCAGCAAAACAGGTCTATCCATAATTTGCAACTGCTGT
GTTCGTATCTAGTACCAGGTATATCAGTGTTCGACGGTGCAACTCCCCCC
TACGCTACGCCCCAAACACTATGCGGCTCTGTCAGCTGCTGCCAACTAAT
AAAGCTCGCTTCTCCAGGTACAACACCCACTCCTGCATATCGCACAACGT
TTTCGGCCGTGCACGGCGGTGGTGGTGTACTCGCGATGCCTGCCATTGTC
GCGTCATACACTGTGTCGTACGACTCCTGTGTGCTTCACGTCCGTCCTCA
CCAACCACTGCGGAAAGTACCGACCCTGTCGGACGAGAAGAGAGTCCCTC
AGACACCGGGCCTTAGGTTTTATGCATCAACAACAAGTTCAGCGTCAGCG
GTTTCCATGTTTTATATCCCATACCTGGAGTCCCTTGTTCTGCGACATGC
AACACGCGGTCAACGCTGAATTTGGATTACACAAGGAACAACAGACTTGA
TACCCCGGCGGACTTTTTGTTTCTGAGCTGTCTACATGCGTTGACCTCTC
GTCCTGCTGTGGTGTTTGACACACAGCTAGCGAAAACATGGCAGAAGAAG
GACTGGTGCAGTTCTTGGTGCTTGCCAAGGGCGCCAAGGGCGCCGCCTGC
GTGGCGCTCATCCAGCAAGTGCTGTCGAACAAGAAGCTCTTCGTCTTCGG
GGAGCTGCTGGCGATGCCCAACGTCCAGGCGGTGAGATTCAGGCGTTTCG
CACGTGAAACAGCTCATGGGTGTCAGCCGTGGTCAAGAGTTAGCCACAAG
CCGTTGCGGTTCCGTAGTTGGCCGGGCTATTTTTGACGCTGGCCGTCTTG
CCCCGCTACGTTGCATCGCTGAGAGTACTGCTGCACGATCCTACGCAGCG
ACAGCAGCGATTGTTGCCGGTTGTAGTCGGCGCTAGCTTTCAAGCAATGA
CTCGTGTTGTTGTTCGTGCATCCCCCAAAAGAGCGACAAGTACCGGCGAC
GGACGGCTCCGTTTCCCGCAAGCGGCAACACGGCAACCAAACCAGTCGGC
GGCGCTTGGGCATTTTTGGTGACACATTTCGGGTTTTGTGTTGTTGTAGG
CTGGCCGATAGAACGTACGGGCACACCGTCAGTGTATGAGAGTACGAGTA
TGCGGTGCCTGCAGCCTTTTGCTCTCGCACCCCTCGCTGATTCATCGCGC
AAACCAATCAGCGATGTGTTTTTTTTTTTCATGGTTCAACCAAAGTTTCC
ATCTGAAGTACGTTGTGGCAATTTGTCGTTGTCGTTGTTGCTGTTGTTGT
TGTTTTTGTTGATCGTCGCCAGCTGGCCGGCACACCTCACGAGCCGCACC
TGCGCTTGCTTGAGACGTTCGCCTACGGCACCTACGCCGATGCACAGGCC
AAAGCGGATCAGCTACCCAAGCTAACAGACGCACAGGTAGGTGCCTCTTC
GGAAAAATTGCAGGTGCTTTGACACAATGTTCACCGTAGAGCAGTACACG
ACGTGCTGCACATGTTGCTGCTGCCTCATCGCAGCTTGATATCGTTTACT
GCATCGACCTCAAGTTTGCTGGGGCCTTGATGCTTTCTGTCGGTGAGGGT
CATGGTTTCAATGCACGGACATGGCCTTCATGGCTACCATGGGTGTTGAA
ACAATCGTCGCAATACTGCTTTAAGCAGTATAATCATGTGTTATCGGTGA
TTCTGCTGATTCTGCTGAAGACCCTTGTAAGCTGTCGGGGCAGTCTGCCT
GATTGTGGGCCGAGAACTCTGCGGCTTCAAAACGCAAGCTTGATTCATTT
CCCACCCAAACGCCTATTTTATCCTTCGCTCGCTTTTATGCATTGCGTAT
CGACGTCGTTCGTCACATCGCCGGCGTCGACATCGGTCGTCACGGCAGGT
AGAAAAGCTTCGAATGCTGAGCGTGGTCTCCCTGGCACACACGAGCAAGG
TCGTCGAGTACGCAACCATGAAAGCTGCCCTCGGCATGGATAACGTCAGG
CACCTTGAAGACCTCATATTCGACACCATGTACTCCGGGCTGTTGCAGGG
CAAGCTGGACCAGCGGCAAGAAGTGCTCAAGGTATCACATCTCAAGACTA
TAACTGAGGCTGAGAGTTTGCATACGGACGATATGATGTTGTTTTGGGAA
AGGATGGAAAAGGATAGGATGTGGTAGGATAGGATAGGAAAATATAAAAA
TGAAAGGGCACGATAGGATGCACCAGTACAGACTGAAATGCTCGAGATGG
GTGGTTGTGTGGGGTGCGACAAGAACTTCGAAGCGAGTACTTGAACTCAC
GTAAATGTAGGATGAAGCGATTTTAAGGATAGTGTACCGAAGAATGATTC
CCCTCCTCCTCCTCCTCCGCCTCAACCTCCTCCTCCTCTACCTCCTTTTC
ATCATTGCCCGTGGGCCGCATCTATCCCACGATTTCAGGTCAAGCACGCC
ATGGCTAGGGACGTCCGGCTGGAAGACTTGACGACTATGATAAAAAAACT
CGGATCCTGGGCGAGCACGACGCAGGTTCTGCTGTCCACTCTAGAGGTAT
ACTTCGTATATGTAAATGGGTGACGCCGGCCGAACACAGCCTGTCACGCC
CCCCCGAGTCTTGTGACGACTCCGTCCATAGCTTTTGCCTCCATGTTTTA
CAGAACGAGAGAAACAACATCTCGCCATACTCGAGATGTTGACGTACAGC
GGTGAATCCTTCCAGGTTGCATGAGAAAATGCCGCATCTATTATGGAACC
TGCCTGCCCGAAGCCGGAATCCTATGATGGTGTGATTCCGACGTGCGACT
CGCACCTACTAACCATTCGAAATTTTCTGCTTTTTTTGCCGCAAACTCGG
CTCAAAAAGCCATTCATCAACACGTGATGTAAAAACGAGCGTGAACGATA
TTTACCTCTGTACATACATACGGTAGATGACGTGTCTTATTCGTGTGTGC
AATATTACTCAGAAGAGTTACCGACTTCTGAGAGAAAGAGTGGAGGGGCG
GGGAACGGGGAGCGGGGAGCGGGGGGAGATCTCCAATAGGCGCCAAGCCG
GTTCTTATCCTCAACTGCAACTCACACGTTTGCTACCATAGGGGAGCGTC
GAGGCCGCAACGGAATCGCGAAGACGCGAGGTACAGACCGCCAGGCTCTT
GGCGAAAGAGGCGGCGGACGTCAAGAAAGCCCTCGGGGAGGGTGGGGGCA
AGCAGCGAGATGTAAGATCCTGTTCCGTCGTTTGTGTCTTTCATTGCCTC
TGTCTGTGTCTGGCTGCGGTTAGTGTTGCAGCGGGGTTGCCGGAGGCAAT
GTGTCTGCTGATGGCGATCAGGCTTCAATGTACGTAGACGGGCGAGCAAC
TAAACGGAGTTTAACTTGAACAACTGCTCTTGCCTGTGGTGGACCGTGGG
TACGTGAAACTTTTTCCTTGGTGAGAAAATTCTTGTCGCATGTATCCCGC
CGTACATGTAAAATTCGGAACAGGTGATAGAGGCTGTGGTGGCGTCAGCA
ACGGCAAAAAAGTGCGTGTGTAACCTTTCTTCCTTTTTTTTTTGCGCCAA
CTCGATGCTGGCGCAAATATTCCGCTGTTGTGCACAACCCGATGACGATT
GAAACTTGTTGGCGACGCCAAAAGGGTTGCTTACTCTCATTTTCCCTAAA
CTTTACGCCTCAGCAGTACTGAAAACGTTTTTGGCTTCTTCGACATGACA
GGACGACGGCTACCACGACTTGGACGAGCGATCGAGCGGCACGCGGAGAG
GCAGGAGCAAGCGCAATCGTGCCGGAATGGACTTCCGCCCACGGAACAAG
TGATGCGATCCGTGTCCACTCATCGACGAAGTCAACCATATTTCCCGTGA
TTTCTGATGAGGTTATCCACAAATTGCGTTATTGTGTGCACAGACTCAAA
TGTGTTTTTATGTTGGGGGGGCGGGGCGAATTGTTGCGGCGTTCCTGGTG
CCGCTTGTGCTTCTACAGGTGTGTCTGTCCTGTTTTGTAGATTATATACA
GGTATACAACACGTGTTGGTGAATCCAGCAGAAAAATGGTGATGAGGGTG
GATTATTCGGGATTTGGTGTGCACACATGCGCGGCACGCATCCCGACCGG
CCTATGATAGCGCACGTGTTTGGTTGCACACAGGTTTTGTTTTGCAGGAT
ACGGCACACAGCAGTCCCGCAAAGACTTCGCAGAATAATTGTGATCCTGC
GATCGAACTGGGAGATAGTGGTACGATGGCACCATCGAGGCGCGTACTTT
CGCTGCGCGGACTACGATAGCGCGTTGCCTGGTGCTTCATACTTCAATAG
CTGTGGGGTAAGTGCGATGGCACCATCCAGGCGCGTACTTTCGCTGTGCT
GCGCGGACTGCGATGGCTTTGCCCGGTGCGTTTCAATATTTCGATGTATT
TTGGCAATACAAATGATGGCTCGTTTAGTAGCATGTAGTTTCGCTGCGCG
AACTACGATGGTAGCGTTGCCTGACGCGTCTCCTTACTTCAACGATTTTG
GCAACAATGATTGATAGCTCGTTCACACAAGCATGTGCAATGTGCGTGTT
GTCATCCCATATTTTCTCGACGCCAGTCTACACCTCCCTTCGGTGTATGT
TGGGCGCGCATCAGCAGAGGAGGTCACACGAGGGGAAGGTCAACACGTAG
GGTTTTGTTCCCCTTTTTTTCCGTCTTTTTTCAGCGCGGCGCTCGCCTTC
GTTTACATGTCGCGACAAGTGTCCGACCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig750:23930..29058-

>mRNA_P-littoralis_Contig750.4.1 ID=mRNA_P-littoralis_Contig750.4.1|Name=mRNA_P-littoralis_Contig750.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=771bp|location=Sequence derived from alignment at P-littoralis_Contig750:23930..29058- (Pylaiella littoralis U1_48)
ATGGCAGAAGAAGGACTGGTGCAGTTCTTGGTGCTTGCCAAGGGCGCCAA
GGGCGCCGCCTGCGTGGCGCTCATCCAGCAAGTGCTGTCGAACAAGAAGC
TCTTCGTCTTCGGGGAGCTGCTGGCGATGCCCAACGTCCAGGCGCTGGCC
GGCACACCTCACGAGCCGCACCTGCGCTTGCTTGAGACGTTCGCCTACGG
CACCTACGCCGATGCACAGGCCAAAGCGGATCAGCTACCCAAGCTAACAG
ACGCACAGGTAGAAAAGCTTCGAATGCTGAGCGTGGTCTCCCTGGCACAC
ACGAGCAAGGTCGTCGAGTACGCAACCATGAAAGCTGCCCTCGGCATGGA
TAACGTCAGGCACCTTGAAGACCTCATATTCGACACCATGTACTCCGGGC
TGTTGCAGGGCAAGCTGGACCAGCGGCAAGAAGTGCTCAAGGTCAAGCAC
GCCATGGCTAGGGACGTCCGGCTGGAAGACTTGACGACTATGATAAAAAA
ACTCGGATCCTGGGCGAGCACGACGCAGGTTCTGCTGTCCACTCTAGAGG
GGAGCGTCGAGGCCGCAACGGAATCGCGAAGACGCGAGGTACAGACCGCC
AGGCTCTTGGCGAAAGAGGCGGCGGACGTCAAGAAAGCCCTCGGGGAGGG
TGGGGGCAAGCAGCGAGATGACGACGGCTACCACGACTTGGACGAGCGAT
CGAGCGGCACGCGGAGAGGCAGGAGCAAGCGCAATCGTGCCGGAATGGAC
TTCCGCCCACGGAACAAGTGA
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