mRNA_P-littoralis_Contig75.153.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.153.1
Unique NamemRNA_P-littoralis_Contig75.153.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig75.153.1 vs. uniprot
Match: D8LF26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF26_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.510e-72
Identity = 134/189 (70.90%), Postives = 141/189 (74.60%), Query Frame = 2 
Query:  170 MVPHSGQRPAGQ--ASTASTIGLKRRAPTT-IGKGVASADPARLNRKATQGQTAVKTKPPRQGGTTGLNGVAAKDGKLAEDRKQKGNGXXXXKNDIDDIFAGVKRLKEEKAEEDAERVAKKKKIKEEHKRRQANPFTGEGGPQKRWAWADEVKPVRFDDEGLPIYTWDSLRIGQGGGTASCPFDCDCCF 727
            M PHS QRP GQ  AST    GLKR+AP T  GK VASADPARL     QG+T    KPP    T    G   K  K  E+   KG      K+DIDDIFAGVKRLKEEKAEE+A RVAKKKKIKEEHKRRQANPFTGEGGP KRWAWADEVKPVRFDDEGLPIYTW+SLRIGQGGGTA+CPFDCDCCF
Sbjct:    1 MAPHSEQRPTGQTLASTGGR-GLKRKAPNTPAGKAVASADPARL-----QGKTTSSRKPPPTS-TGAKGGDKGKGSKPIEEGTGKGKAKGKVKSDIDDIFAGVKRLKEEKAEEEAARVAKKKKIKEEHKRRQANPFTGEGGPDKRWAWADEVKPVRFDDEGLPIYTWESLRIGQGGGTAACPFDCDCCF 182
[Close]
BLAST of mRNA_P-littoralis_Contig75.153.1 vs. uniprot
Match: W4GJQ6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GJQ6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.360e-11
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 2 
Query:  437 KNDIDDIFAGVKRLKEEKAEED-AERVAKKKKIKEEHKRRQANPFTGEGGPQKRWAWADEVKPVRFDDEGLPIYTWDSLRIGQGGGTASCPFDCDCCF 727
            K+ +D +F+G+K  K++K +ED A R  + K++ E+   R+          QK    +D  +PVR+D +GLPIY+ +SLR+ QGG TA CPFDC CCF
Sbjct:   70 KHQLDALFSGIKAKKQQKIDEDNAVRRQEDKELAEKRAYRKHLEALEAEHKQKNNDSSDP-RPVRYDADGLPIYSEESLRLNQGGETADCPFDCWCCF 166
[Close]
BLAST of mRNA_P-littoralis_Contig75.153.1 vs. uniprot
Match: A0A5D6Y0I8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0I8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.240e-11
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 2 
Query:  443 DIDDIFAGVKRLKEEK--AEEDAERVAKKKKIKEEHKRRQANPFTGEGGPQKRWAWA-----DEVKPVRFDDEGLPIYTWDSLRIGQGGGTASCPFDCDCCF 727
            +IDD+F  +K  K+E+  AEE  +R A K   K++ ++ +      +   Q   + A      E +PVR+D++G+PIYT ++LRI QGG TA CPFDC CCF
Sbjct:  108 EIDDLFQSLKAQKKEQVAAEEKEQRDANKALAKQQQEKLRLEEQIKKLEAQNTNSTAMTGKNPEARPVRYDEDGMPIYTEEALRINQGGDTADCPFDCWCCF 209
[Close]
BLAST of mRNA_P-littoralis_Contig75.153.1 vs. uniprot
Match: A0A2D4C8L2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8L2_PYTIN)

HSP 1 Score: 71.2 bits (173), Expect = 1.490e-10
Identity = 46/115 (40.00%), Postives = 63/115 (54.78%), Query Frame = 2 
Query:  443 DIDDIFAGVKRLKEEKAEEDAERVAKKKKIKEEHKRRQANPFTGEGGPQKRWAWADEVK--------------------PVRFDDEGLPIYTWDSLRIGQGGGTASCPFDCDCCF 727
            DIDD+F  +K  K+E     +E+ A+ KK  EE ++R+A         ++R    DE+K                    PVR+D++GLPIYT  SL+IG+GG TA CPFDC CCF
Sbjct:  107 DIDDLFQSLKTKKQE-----SEKAAELKKRDEELQKRKAR--------KEREQLDDEIKRLEAQNTNVTAMQGQNPDPRPVRYDEDGLPIYTEASLQIGKGGDTADCPFDCWCCF 208
[Close]
BLAST of mRNA_P-littoralis_Contig75.153.1 vs. uniprot
Match: A0A024TNS1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNS1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.240e-9
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = 2 
Query:  470 KRLKEEKAEEDAERVAKKKKIKE---EHKRRQANPFTGEGGPQKRWAWADEVKPVRFDDEGLPIYTWDSLRIGQGGGTASCPFDCDCCF 727
            K ++ ++A+E AE++A +K ++    EHK++  + F              + +PVR+D +GLPIYT +SLR+ QGG TA CPFDC CCF
Sbjct:   87 KAVQRQEAKERAEKLAYRKHLEALEAEHKQKNNDTF--------------DPRPVRYDADGLPIYTEESLRLNQGGDTADCPFDCWCCF 161
[Close]
BLAST of mRNA_P-littoralis_Contig75.153.1 vs. uniprot
Match: A0A6G0W882_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W882_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.240e-9
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 2 
Query:  443 DIDDIFAGVKRLKEEK-----------AEEDAERVAKKKKIKE---EHKRRQANPFTGEGGPQKRWAWADEVKPVRFDDEGLPIYTWDSLRIGQGGGTASCPFDCDCCF 727
            ++D +F+ +K  K++K           A+E+AE+ A +K ++E   EHKR+  +                + KP+R+D +GL IY+ +SLRI QGG TA CPFDC CCF
Sbjct:   97 ELDALFSNIKSKKQQKLADDEAIRRQVAKEEAEKRAYRKHLEELEAEHKRKHND--------------TSDPKPIRYDADGLAIYSEESLRINQGGDTADCPFDCWCCF 191
[Close]
BLAST of mRNA_P-littoralis_Contig75.153.1 vs. uniprot
Match: A0A0P1B5W0_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B5W0_PLAHL)

HSP 1 Score: 67.8 bits (164), Expect = 1.960e-9
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 2 
Query:  443 DIDDIFAGVKRLKEEK-AEEDAERVAKKKKIKEEHKRR-----QANPFTGEGGPQKRWAWADEVKPVRFDDEGLPIYTWDSLRIGQGGGTASCPFDCDCCF 727
            +IDD+FA +K  K +K   E+ +++AK+ K + E K R     Q      +           + +PVR+D++GLPIYT  +L+IG+GG T  CPFDC CCF
Sbjct:   99 EIDDLFAILKTKKRKKNIAEENQKLAKEVKERCEKKERERLQQQIKKLEAQNTNSTACGLNPDPRPVRYDEDGLPIYTEAALQIGKGGNTQDCPFDCWCCF 199
[Close]
BLAST of mRNA_P-littoralis_Contig75.153.1 vs. uniprot
Match: A0A1V9ZBJ6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBJ6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.510e-9
Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = 2 
Query:  461 AGVKRLKEEKAEEDAERVAKKKKIKEEHKRRQANPFTGEGGPQKRWAWADEVKPVRFDDEGLPIYTWDSLRIGQGGGTASCPFDCDCCF 727
            A +KRL +E+AE  A R  K +K++ EHK +  +       PQ          PVR+D +GLPIYT  +LRI QGG TA CPFDC CCF
Sbjct:   78 AELKRLDQERAEMQAYRK-KLEKLENEHKAKNNDT----SNPQ----------PVRYDADGLPIYTEAALRINQGGDTADCPFDCWCCF 151
[Close]
BLAST of mRNA_P-littoralis_Contig75.153.1 vs. uniprot
Match: A0A067BYC5_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BYC5_SAPPC)

HSP 1 Score: 67.0 bits (162), Expect = 2.710e-9
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 2 
Query:  452 DIFAGVKRLKEEKAEEDAERVAKKKKIKEEHKRRQANPFTGEGGPQKRWAWADEVKPVRFDDEGLPIYTWDSLRIGQGGGTASCPFDCDCCF 727
            D  A  KRL +E+AE+ A R  K +KI+ E+K + ++              +   +PVR+D +GLPIYT  SLRI QGG TA CPFDC CCF
Sbjct:  108 DSAAEQKRLDDERAEKLAYRK-KLEKIENEYKTKHSD--------------SSNPQPVRYDADGLPIYTAASLRINQGGDTADCPFDCWCCF 184
[Close]
BLAST of mRNA_P-littoralis_Contig75.153.1 vs. uniprot
Match: A0A3F2RN39_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RN39_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.900e-9
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:  611 EVKPVRFDDEGLPIYTWDSLRIGQGGGTASCPFDCDCCF 727
            + +PVR+D++GLPIYT  SL IG+GGGT  CPFDC CCF
Sbjct:  166 DARPVRYDEDGLPIYTEASLHIGKGGGTKDCPFDCWCCF 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF26_ECTSI1.510e-7270.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W4GJQ6_9STRA6.360e-1142.86Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A5D6Y0I8_9STRA8.240e-1141.18Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4C8L2_PYTIN1.490e-1040.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A024TNS1_9STRA1.240e-941.57Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0W882_9STRA1.240e-937.61Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A0P1B5W0_PLAHL1.960e-939.60Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A1V9ZBJ6_9STRA2.510e-947.19Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A067BYC5_SAPPC2.710e-945.65Uncharacterized protein n=2 Tax=Saprolegnia parasi... [more]
A0A3F2RN39_9STRA2.900e-966.67Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:474701..480375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.7028
PFAMsDUF1764
Model size1470
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.9e-11
EggNOG OGs2E28N@1|root,2REF7@2759|Eukaryota,3QFHP@4776|Peronosporales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_006470.1
DescriptionEukaryotic protein of unknown function (DUF1764)
Cds size561
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791551.1719632-UTR-P-littoralis_Contig75:474700..4748691680791551.1719632-UTR-P-littoralis_Contig75:474700..474869Pylaiella littoralis U1_48UTRP-littoralis_Contig75 474701..474869 +
1680791551.2255442-UTR-P-littoralis_Contig75:479635..4803751680791551.2255442-UTR-P-littoralis_Contig75:479635..480375Pylaiella littoralis U1_48UTRP-littoralis_Contig75 479636..480375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791551.1885579-CDS-P-littoralis_Contig75:474869..4752101680791551.1885579-CDS-P-littoralis_Contig75:474869..475210Pylaiella littoralis U1_48CDSP-littoralis_Contig75 474870..475210 +
1680791551.203282-CDS-P-littoralis_Contig75:478799..4789121680791551.203282-CDS-P-littoralis_Contig75:478799..478912Pylaiella littoralis U1_48CDSP-littoralis_Contig75 478800..478912 +
1680791551.2152932-CDS-P-littoralis_Contig75:479528..4796351680791551.2152932-CDS-P-littoralis_Contig75:479528..479635Pylaiella littoralis U1_48CDSP-littoralis_Contig75 479529..479635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.153.1prot_P-littoralis_Contig75.153.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 474870..479635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.153.1

>prot_P-littoralis_Contig75.153.1 ID=prot_P-littoralis_Contig75.153.1|Name=mRNA_P-littoralis_Contig75.153.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp
MVPHSGQRPAGQASTASTIGLKRRAPTTIGKGVASADPARLNRKATQGQT
AVKTKPPRQGGTTGLNGVAAKDGKLAEDRKQKGNGKGKGKNDIDDIFAGV
KRLKEEKAEEDAERVAKKKKIKEEHKRRQANPFTGEGGPQKRWAWADEVK
PVRFDDEGLPIYTWDSLRIGQGGGTASCPFDCDCCF*
back to top

mRNA from alignment at P-littoralis_Contig75:474701..480375+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.153.1 ID=mRNA_P-littoralis_Contig75.153.1|Name=mRNA_P-littoralis_Contig75.153.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5675bp|location=Sequence derived from alignment at P-littoralis_Contig75:474701..480375+ (Pylaiella littoralis U1_48)
TGTATTTATTCTTGTCATCTACCATTGATGTGAGCGGCGAGAGAACAGCA
AGTACAGGCAGAGCGGGGCGACTAGTGAAGCTCGTGCGTGCTTCGTCCCA
CAACACTACACTTGCTGTATGGTATGCTCTGTGTGTGTTTAAGAAACAGC
CATCTGACCTTCCCAGAAAATGGTTCCGCACTCTGGCCAAAGGCCAGCAG
GTCAAGCATCTACTGCATCTACGATTGGGCTCAAACGTAGGGCACCAACA
ACCATAGGCAAGGGCGTCGCCTCCGCAGACCCAGCAAGGTTAAATCGAAA
GGCAACTCAGGGACAGACCGCCGTCAAGACCAAGCCTCCGAGACAGGGTG
GTACGACTGGATTGAATGGGGTTGCGGCGAAGGATGGGAAGCTAGCGGAG
GATAGGAAACAGAAGGGCAACGGGAAGGGGAAGGGGAAGAACGACATAGA
CGACATCTTTGCTGGCGTGAAGCGATTGAAGGAGGAGAAGGCGGAGGAGG
ACGCAGAAAGGTACGTGAACCAGCACGGCAGGGTATGTGTGGTCCTGTTT
CAATCTGTGTGTTGACGGTTTTCGCGAGCCGGACCGATAATGGACGTGGT
CATGTCTCGGAGATTACGAATTGCATTACGAACTGCTGGCTTACTTAGAT
GATGCATTATCCCTTGAGCAGTACGAATGAGCCCTCGACCAGTCCAGGTG
AAATTCCCTCAGCGTGGCACAGCAGCAAAGCTCGCCCCCTTCACCTGTGC
AAGTACATATACCATGACCGAGTACTTCGAAGTAACGCAATACTTCGAAG
TAGATGCGTATACCGAAAGTGACACAAGATACCAATGCCCTCGACCGATT
TTTGCACGTCTATTACAGTACTCCGTAACGAAATGGGCACCCGTACAGCA
GTATAAAATCGACAATTTCGAAAAGCTCTGAACGGGATCTTGCTCGTAAC
GCTAACTCCACTATTGTCGGCACTGGCACTCTTTGCCATCGAGTAATCGA
GCTATCAAAATCAGCTCAGGGGGTGTGGTATCTTATGTCACCCACGGCAG
AATCATTGTACATATCATACTCCGTATGATGTTAGCCTTTGATAAAGCAC
GGCGATACGAGTACATGCAATACCCTGTAGTTTGCTTAGCATACCTCCGC
GTTTGTGTGTGTGTCTTCGTCCCATTTATTTTGGGCACCGGTCTACACCT
TTCGGTATGAAGTGCTTGCACCAGCCGGGTTGTCACACACGAGCTTTTTG
TTTTTCATTTTGCCTTTATTGCCCAAACTTTTCCTCCTGCAATAGTGTGT
TTGCGAAATAAGAAAAATGATTCAAATTTCCTTTTTGAGGTTCCCCCGAG
AGGCTCCGTGATTGCAACGAAATCCGGATTTGAAGCCAAATCAGCAAAAT
ATCGCCGAAGAAAGGATATTTGAGAAAGGATATTTGATCTGCCAAGTAGG
TCATGCCGCCTCACAACGCGATTGGTCAAGTCTATCCGGCATCACCCGAG
AGGTGGCTCTTTAGCTGTGCCCCTGCTTTGCGAATCTAGGCAACCCTCGA
GTGGAAGAGCAGCGGTTCGATCGATCAGAAAACAACGCTTATTGGAAAAG
TTTGTGCCTACCTCACACGATGAGTCGGGTGACTTGAACAACTTAAAGCA
GTAATATTATTTTTGCAAGCCTATCGATACCTCGCGGCCCCAGACGACCT
ACGGAGGAGAGGGACCAGACACACAGCTCAAGGGCAATTGCTTTGTTGTT
GCCGTGGGTTCATTCGTCGTTCGAGAGCGATGGACGAAACTTTGAAGTGT
GGGACGAGGGTTATAGATGGAATTAATTCTTCAGCGGAGGAGGAGGAGTG
AGCCGCAGCAGCAGTAGCAGCAGGTATTTTGTATTTTGGGCCGCTGCATG
AATTTTTTGGTTTGTCATCCATCACTCTCGAACCAATTGAGCCACAGCAA
TACTAAAGCCACCGCCCGTGAGCTATGCCTCTGGTCCTTGTCCTCCGGTT
GTCATCTAAGGCCACAAGGCATCAAGTGGCTCTCAATAGAAGCGTTGCAG
AAACCGATGAGTTGTGAAAAAATTGAGAAGAAAGAAAGGCCGTTGGAATC
CAGCAAATACGTACTGCTGTATGTATACTCCGTACAGCAGTATAGACAGA
CAGACGGCAGTGACTTCTTCTCTTTTTTCACAAGTGATCGGTTTCTGCAA
CGGCTAGATTGCTAGCCTATTGATGCCTTGCGGCCCCAGATTACCAACGG
AGGAGGGGGACAAGACACACAGCTCACGGCCGATGGCTTTGGTATTTCTG
TGGCTCAATTGGTTCGATAGTTATGGAAGAGAAACCAAACTGGTGTACCT
GCGCAAAATACCTTGCTGCTTCCTGCTGCTGCTGCGGGCTTTTCTTCTCT
TTTCCTATTTTTTTTCACACCTCATCGACGCCTGCAATATTTTTTTGTGA
GCCTGTTGATACCTCGCGGCCTCAAACGACAATCGGAGGAGCACGACCAT
ACACACAGCTTACGGGGCATGGCTTTGATATTGTTGTGGCTCCATTCATT
CGAGAGTGATCAACAATTACGCTACAGCAGTAGCCTGTTGAAACGATGTC
AACACCGTCTGTCTGTCAATCATCAAACAACAGAGTCGCCATGGGAAAAA
TAAAATCAACTACGGTTCCTTTTGTAAAAAGCGGTGCTTTCGAAAATCCT
GTTGGAGTTCTTCTTATGGGCTGCTGCAGCACCTCCGGTCGCCGGCGCTG
CGGCCAGTGAGAGTTCGCATTTATTTACTCCACTTGCAGCCGTGCCGTCC
ACTACGACAACACCCAGTTGACTCATGTTGTGTACAAAGGCAGGCGTAAG
GTGTGCGTGTATGCTCTGATGGCAGCAGAGAGATTGTTGTTGCGTAGAGG
TGTACCGGTCTTCGGTAGCCTGGAGCACGGAAGGCAGTCTACGGAAGCAG
GTGGTACGCTGTTGTCGTGATTCAGAGGGGTACCCCCTCTTTTTATCATA
TTGAGCCTCCATAAAAGAAATCTTTTTTCGCATACTCTTTCCAGAATTTC
CTTTGTTTGGGGGTTTGAAATCACAGGACTTTTTTTTTTTATTATTCAGA
AAGGATATTTGCCAAATCATATTTCTTATTTCGCAAACACTCTAATATTT
GCTTTTTGTTTTCAATGCAAGCCGGGTTCAGCAATCCCTCCCCTGTTTCG
AATACGAGTTTGTTTGTATAATCGTTACAATCTGTAGGTCAGGTAATTGC
CCACCTAGTGTTAAAATGCTTTGTCTCTTCGGCCTTTTCTGTACCCTTCC
GTTTACTTTCTGTTTTTTTTTGTTTCGATTTTTCTTGGATTTTTCATTTT
TCCACATACCTATGATGTGCTCAGCACCTTGTGACCACGGGCCAGACCTT
GGCGATGTGACCCATCTCTGCTGTCATGTGTGAAACAACAAGCAATAAAA
TACTCGAAGTACTGCTGTACAACAGCAGCACGGATGAAAAGCTTTTTTTG
TGCGTGACTGCTTTGACCCTCATCGCAGCATGCGTAGCGGAGGTACATCC
AGATTCAAGTCAAAACGGTAACCACAGGTTGCAAGTCCGGGATATTCCTC
TAAATTAACCACTCCTAAAGCTTCACACCTTCCCTACCGAATTCCCTCCT
CAATCTCCACACCACTATCGTCCTCCTGCTGTAATCGAAAATTATACCGG
CGCGCGCTACTTCGACCTTTTACTGTATCAAGTTTCAATCACCTTAACCA
AAGGGCGAGATCGTCCAACAACGAGCGGGCCTTGGCCGCTTACCGGTGAA
AGGGTCATGGTATCGCACAGCATGTTGTTCTGGTTGTGAGCAATACTGCA
GCGTTGGAACGTGCGCCATACGGTTTCCGTGGTACTTCGTTGCCGTGGGA
ACAGAGGCAGGAAGGGATAAACGGCACTCGTCTCTCTTTGTTTCCCGCTC
TCGGAGCACCACCCACCGCTGCTATTATCCGAGCACTTGCTACGAGTATC
TACAGCCTCATGTACAACATCAGTTTCTGTGCGGCAGACGAAATTCCTGA
CGATATTCTGCCATTTGTCTGGCCTGCCTTTAATGCTTCTTCAAACCAGA
GTGGCAAAAAAAAAGAAGATCAAGGAGGAGCACAAACGAAGACAAGCAAA
TCCCTTCACGGGCGAGGGAGGCCCGCAAAAACGATGGGCTTGGGCTGACG
AAGTCAAACCAGGTGAGTGTTCAGCAGGCTCTTTGTTCCCGTTCCTCTAA
GGACGTCTTCTCTTTGTTGAGCCTTTGGTTGGAGAAGCTCCCAAGCACCA
GCAGTTACGTCCATCACGAGACATTTTGAGAGTGTTGCCTCGTTTTGCTC
GAAACATTAACCTCCCAAACTTACACTCGTATATGGCGATTGTGTTCTTT
GAAAAACCGGGCGTGGTGGGCGATTACGTGATTACCGCTTCCCCAGAGAA
GCCCCATGCCTTCTTCGGTTGTGCGCATGACTATCCTTTGTTCCAGTAGA
TTCAGCGTGTGTTTGGAGTCTTGCTTGCTCAAGCTCTTTTCATTGCCTAC
AATTCAAATGTGCTCACGGCCTTCCCGCGGTTTGTTGCTCACAAGTTATT
AACGAACTATCGAAACGATATGAAACAGAGAATCGAGTATCATGACGAAT
GCTAGCAAGCCGGCGCGAGAGTGTCCTTGAGTTTCATGCCATGCCTGCGA
AGGGAGGCGTCGATTTCGCTCGCACGGCAATACAGCCGTTACATACCAGA
TTTGCCTCTAATCTTTTGAAATTTACCCCGACATGTCTGTGCCGTCCGAC
CCACCCTATCCCGTATTTCCATGAATAGTACGATTTGACGACGAGGGACT
GCCGATCTACACGTGGGACTCGCTTCGAATCGGCCAAGGCGGGGGCACCG
CGTCGTGTCCGTTTGACTGTGACTGCTGCTTTTGAGCACCAGTCGCGACG
CAACGTGTCCTCACAGCAGTTTTCTTGGACGTATCTCGGAACTTGTGATA
CCTTCAGGAAGCACCCATATTTGGTTGGGGTGGTAATAGCGTCAAGGTTA
CGATCGGCTTCGTGTTTCGTTTGTTCTAACATACTGCTGGTAGTGTGGGA
TAGCAGCTTGTGATGGGAATGTGACACCTCATGTTCGCGACTTTCACACG
AGGGCAAGGAGCATCCCCCCCCACCCAATTGCCCGACCACAGGAAGTCAC
AATCCTCAGCAATTTTCAATACGGTACTGCTGTCAGGGTGCACGGAAATT
GCGACGTTGAAAGTCTTCCATCTATTGGCAAATTCGGGTGGGAAGTGGAA
ATGTTTCGAAAAGCGATTTCGAACAGGGCTGTTAGCCCCGACGATCTAAT
TCGAACGTGTTTTTGACGAGTCGAGGTCGTCACGAAGTGTTGTTACGCTT
GGATTTTCAGTACTTCAGCACACGAACAAGTTGTCCATCGTCCGAGACAT
ATTTTGATGACACTTGTCTCTGCCCCGAGCAACCTACGCAATTTTTTAGC
TCTTGTAAGAATGCTGTCGTCGGCTATCACGACGGGGTCCGCCTTCAAAC
GCGGGTGTCCGTTCGCCCAAGCACACGCTCGACGTTCCCGCCAATTTCGT
TCTCTCTCAATCGGGCCATCCCGGCCGTCACAGACCTCTCACTGGGCTCG
CACACCCTTAACTTTGTGTTTTCCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig75:474701..480375+

>mRNA_P-littoralis_Contig75.153.1 ID=mRNA_P-littoralis_Contig75.153.1|Name=mRNA_P-littoralis_Contig75.153.1|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig75:474701..480375+ (Pylaiella littoralis U1_48)
ATGGTTCCGCACTCTGGCCAAAGGCCAGCAGGTCAAGCATCTACTGCATC
TACGATTGGGCTCAAACGTAGGGCACCAACAACCATAGGCAAGGGCGTCG
CCTCCGCAGACCCAGCAAGGTTAAATCGAAAGGCAACTCAGGGACAGACC
GCCGTCAAGACCAAGCCTCCGAGACAGGGTGGTACGACTGGATTGAATGG
GGTTGCGGCGAAGGATGGGAAGCTAGCGGAGGATAGGAAACAGAAGGGCA
ACGGGAAGGGGAAGGGGAAGAACGACATAGACGACATCTTTGCTGGCGTG
AAGCGATTGAAGGAGGAGAAGGCGGAGGAGGACGCAGAAAGAGTGGCAAA
AAAAAAGAAGATCAAGGAGGAGCACAAACGAAGACAAGCAAATCCCTTCA
CGGGCGAGGGAGGCCCGCAAAAACGATGGGCTTGGGCTGACGAAGTCAAA
CCAGTACGATTTGACGACGAGGGACTGCCGATCTACACGTGGGACTCGCT
TCGAATCGGCCAAGGCGGGGGCACCGCGTCGTGTCCGTTTGACTGTGACT
GCTGCTTTTGA
back to top