mRNA_P-littoralis_Contig75.145.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.145.1
Unique NamemRNA_P-littoralis_Contig75.145.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig75.145.1 vs. uniprot
Match: A0A6H5JMD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMD5_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 1.510e-66
Identity = 124/167 (74.25%), Postives = 133/167 (79.64%), Query Frame = 2 
Query:  149 MCTLNVNAPIFQPSRQVFQ----PIFNFGEQAYVRIVDSDEYRQELLFNDFNREEVADEDLFNPAVYPVSAADHEELAAAESFNMEMAELAELEHQHELRSLLIARITAIQQGTTGNQRPAKIASLNNAMF--MPRGAPASGLKGKRLNPTKKCPHNINQPQETGRY 631
            M TLN NAP F PS  V Q    PIFN G  + V I+DSDEYR E L N FNRE VADEDLFNPAVYPVSAADHEEL AAE+FN EMAEL  LEHQ ELRSLL ARI+A+QQGT+G QRPAKIAS+N+AMF  + RGAPASGLKGKR NP KKCPHNINQP ETGRY
Sbjct:    1 MFTLNANAPSFVPSNPVHQQMVRPIFNSGVPSCVLILDSDEYRSEFLVNTFNREAVADEDLFNPAVYPVSAADHEELTAAENFNREMAELEALEHQEELRSLLQARISALQQGTSGKQRPAKIASMNSAMFSGLSRGAPASGLKGKRFNPAKKCPHNINQPLETGRY 167
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMD5_9PHAE1.510e-6674.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:454778..460914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2658
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006490.1
Cds size489
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.145.1prot_P-littoralis_Contig75.145.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 454926..458893 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791550.784132-UTR-P-littoralis_Contig75:454777..4549251680791550.784132-UTR-P-littoralis_Contig75:454777..454925Pylaiella littoralis U1_48UTRP-littoralis_Contig75 454778..454925 +
1680791550.857328-UTR-P-littoralis_Contig75:458893..4609141680791550.857328-UTR-P-littoralis_Contig75:458893..460914Pylaiella littoralis U1_48UTRP-littoralis_Contig75 458894..460914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791550.794975-CDS-P-littoralis_Contig75:454925..4550951680791550.794975-CDS-P-littoralis_Contig75:454925..455095Pylaiella littoralis U1_48CDSP-littoralis_Contig75 454926..455095 +
1680791550.804576-CDS-P-littoralis_Contig75:455333..4553681680791550.804576-CDS-P-littoralis_Contig75:455333..455368Pylaiella littoralis U1_48CDSP-littoralis_Contig75 455334..455368 +
1680791550.8221376-CDS-P-littoralis_Contig75:455644..4557521680791550.8221376-CDS-P-littoralis_Contig75:455644..455752Pylaiella littoralis U1_48CDSP-littoralis_Contig75 455645..455752 +
1680791550.8365862-CDS-P-littoralis_Contig75:456440..4565411680791550.8365862-CDS-P-littoralis_Contig75:456440..456541Pylaiella littoralis U1_48CDSP-littoralis_Contig75 456441..456541 +
1680791550.847405-CDS-P-littoralis_Contig75:458818..4588931680791550.847405-CDS-P-littoralis_Contig75:458818..458893Pylaiella littoralis U1_48CDSP-littoralis_Contig75 458819..458893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.145.1

>prot_P-littoralis_Contig75.145.1 ID=prot_P-littoralis_Contig75.145.1|Name=mRNA_P-littoralis_Contig75.145.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=163bp
MCTLNVNAPIFQPSRQVFQPIFNFGEQAYVRIVDSDEYRQELLFNDFNRE
EVADEDLFNPAVYPVSAADHEELAAAESFNMEMAELAELEHQHELRSLLI
ARITAIQQGTTGNQRPAKIASLNNAMFMPRGAPASGLKGKRLNPTKKCPH
NINQPQETGRYN*
back to top

mRNA from alignment at P-littoralis_Contig75:454778..460914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.145.1 ID=mRNA_P-littoralis_Contig75.145.1|Name=mRNA_P-littoralis_Contig75.145.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6137bp|location=Sequence derived from alignment at P-littoralis_Contig75:454778..460914+ (Pylaiella littoralis U1_48)
GTTCTCTGCCTGCCCAGTCTCTCTCACAGAACAACACTCAACTCTCCTCA
ACGGCCTTTCCATCCACTTCCATACCGTCTGAGCCTTCACCGCCCCGACA
TACCCACGCTATACAAGTTCGAGAACACTGCAAACGGCCGTTCCAATCAT
GTGCACGCTCAACGTCAACGCGCCAATCTTTCAACCGAGCCGGCAAGTAT
TCCAGCCGATCTTCAACTTCGGAGAGCAAGCCTATGTGCGCATAGTCGAT
TCTGACGAGTACCGCCAAGAGCTCCTGTTCAATGACTTCAATCGCGAGGA
GGTGGCAGATGAAGACTTGTGAGTAGTACCCTAATCTCTCCGGTCTGCGA
TTGCTTCTCATCGTCTCCGCTGCAGCTGTGTCTCTCCAGACGCGCTGCAC
ATCTCATGCCCCATCGAGAAAGTGAAAAGTTCTTTGTTTCTATTTATACT
GCTGTGACATAAAAAATACAAAATGATTTCACATATATTTTGTACCCCCT
GGGGACTGATTTTGTTTTTGTCTTCGTGGCATCTCCTGCTCTTGAAAAAT
CGACAGGTTCAATCCAGCAGTGTACCCCGTCTCCGCAGCAGGTGAGCCTT
GTCGTTTGGTGTTGCCTCCACTACAGTACCCACCTGTTGTTTTCCGCCGG
GGCGGTAATCGGCAGATGCAACCATCAGCAATGCAGTCGTTCATTCTTGG
TTGTCTTTTCGCGCGATGATATCTCGTATATACCAAAATTGCAACCGGTC
TCATCTCATAACATGACTGCATCAAATTCTCCGACAAATCCGCCTCTCAC
GTTCCTCGCCGCCGTCCCCGCGTCATGCCCCCCTGCCCCCCCCCCCCGCG
ACCTTGCTCTGCTCCAGACCACGAAGAACTAGCCGCCGCTGAAAGTTTCA
ACATGGAAATGGCCGAGCTGGCTGAGCTGGAGCACCAGCACGAGCTTCGC
TCTCTTCTGATTGCGCGTATCACTGGTGAGGATATCTTGACTTACTGTGT
TTTTGTATAGAAGATCCATTCCTCCGCAGAAATATCCAAAAAATGGAAAA
TCCGACGTTGTCGCTTTTTGATTTTGCACTGATGCCTGTGACTACATGAT
CGGATCATATCACACAGCAGTGTCAGCGCTGCAGTTCACGGCAGGCTGGC
GTACCTTTGTTAGGGCAGCTATAAGTCGGGCGTGCAGAAGATTTTGCATC
GTACTATCATATGGTACCTGTATAGGCATGCCCATCGTGTGAAATAAGAC
GGATCTTCACGTGTGCTCCCTCGCTGAACCTTCAATTTTGTCGGGGCAAT
AAAAGAAAAAATACTACCTGGTACGTTATATTCCCATGCTGTTGCCGTAT
TGGCGTTGCTCTTGCCGCATTTCCTCAAACATCAAACGCTGGATTTTCCG
CCCTGCCTCGCAACAACGATATGCTACTTGTATGCAGGCGCACACGGCTT
TTGCAACACCGAGCCTTGTGCCGCTTTCTTTTTATCACCGGCACTCTGTT
CTGCTGTGGTCTCACCTGTTTATCTAACATTTCACACTGTACGTATGTAT
CACAAGAACTTTTTCCTTTCCCTGCTGTGCATTACTCCGGAGTAATTGTT
TTTCCCATCCCTGTTGTGCATGAAAAAATACTCCGTACTTCGTACAACTT
GGCATGTTTCCAGCTATCCAGCAAGGAACAACCGGCAACCAGCGTCCGGC
GAAAATCGCTTCCTTAAACAACGCCATGTTCATGCCCAGAGGCGCACCGG
CATCAGGGCTCAAGGTTAGCACAAGAAACGCACCGCCCGTGACTTAAGCT
GTTTTCGGTGCATATATATTTTTTCCCGACCGCACTTCTTTGCTGCTCCT
GTGCTCTCAGGCGGTTTCTTGTCGGGCCGGATTTTTATTCGTTGTTTGAT
AGATTCAGATTTTTTTTTGAAATCAGGCTTCTTATTATAGGCTCGGAAAA
CACCTTTTTCCGAACTACATTTTCCGAACAAAATTTTCCAAACAGCTTTT
AATCGGATTTCAGCCGGAAAATCGGACATTTTCCGGACGCTGGATCAGTT
CGGAAAATACGATCGGAAAATATATAAAAAAAGAAAATGTGTGAAGTTAT
CTCTCTGTGTGTGGACAAAAAAAACGATATTAATCACAACAGAGCATCAG
AGGAGGAGAACTGCTGCTACTTTTTTCTGTTTTGTTGCAGCTTCTGCTCC
TGCTGCTGCTGCTGCTACTACTGCTTGCTTCTGTCCATACATGTGTCCAC
CATCTTTCTGTGTACGCTTGCCGTGTCATCATCCATTCCATCGTGTCATC
GTGTTCATCAGCAACCAAAACCAACCGTATGTAGCAGCAGAATCATCAGC
ACAGCAGCAGCAGGAGGAGGAGTATCAAAGCTTCCTCTGAGCGAGACCAG
TTTGCATCTTCGCTCGTAACTCCCCAATGAATGAAGCCACAGCGATGACA
AACCCATCTTCCGTGAGCTGTGCGTATGGCTCCCCTCGTGTGGTAATCGT
TTGGGTGAGGATCACACTGGCATGGGGTGAGGATCACACTGGCATGTTCG
CGAAATGGTCATCGCTCGTGGCTGTGGCATGTTGTTGTGTTGTAAAAAAG
AACCCGAGCTGTCATCTCCTTTCTCTACTGCTGTACAACTATATACATAC
AGCAGTATAGAATAATGCTGCTGTACAGCAGACCGGCTGACACATCTTTC
TCAATTTGTTTCGCATGAGTTGGTCATGAGCAAACCTACGTTGCGAATGT
ACGGATGTAACCCGAACACAAGCGATCACGACATGAGAAGGATCATATGC
ACAGCTCACGGAAGATGCCTTCGTTATTGCTGTGTCTTCATTCGTTCGAA
AGTTACGAGCGGCGATGCAAACGGGTTTCAGCGCAACAAACACCACCATG
CGGTCCTTCGATGCAGATACATACTCTGGAGCCGACTCTTCAACCACCTA
CTTAAAAAACATATAACCGAAAATCCGAACACCTATTTACCTATAAGAAC
AGAGAATCGGCAACCGTTGGCCGGACAAAGTTCGTTCGGATTCTATCAAA
AAATGAAAAAAAAATCCGGCCCTACAAGAAACCGCCTCATTGCACACACA
ACTGCTCTGTTACGGATGCTGTCACATCATGTGTGTAGTTGTGTAGTTAA
GGCGGCACTGATCTTGATGCCGTTACATCATGTGTGTAGTTGTGTGGTAA
AGGCGGCACTGATCTTGGGCTGTTATTATGCATAGGATTTGGTCATACAT
GAGGAACGCAACACATACTGTTGTAAACTACTCCCAGTACGAAGTATCAA
TGTCGTTCGCGCCCGCTGCAACACAATACAAGCAAACATTCTTTGCGCGG
GGCAGGACACGTCTGCGAGCCCCAAAAACGCCAATAGAGGTTAAGGTTTA
GGTTTTCTACGTGCTGCTGTAGCGTCGTGTGTCATGCATTTTTTTTGGTT
TCGGTAGAATGACTGTGTGCCCTTCACTCCCGTGAAAATTCCCGACGGCA
AATTGGCATACACACAAGCATGGGGACCCTACATGGTAAAACCAGCTAGT
CTAGTCTTCGGCGAGAGTGTCACCACGGCAATCGCCTTGGGTAGTGTCGT
CCTTCCTGCACTTAACACGTGCGCCTCTTTCACGATCAATTCCTGCGCTT
CTCATTCGTATGTACACCGAGAAAGGCATGCACCGCAGTGGGAAGTGGAG
AAAAAAAAACTCCCGTGTTGACTTGCCCATGTGTGACCCCGGCTGGAGCG
TCTGCCTGCTTTCATGTATTCCGAAAGGGACGTACTTCCGAGTATCATAG
AGTGGCGTCCAGAATGGATGGGACGAGAACACACACGCACACACACACTG
ATGCCGGAAGGTGTAGACTGGCGTTCATAAAATAGGTGGAATGCCAACAC
ACACACTTTTGAGTCATGGAAAAACGCGTTGATAACTCTTCTTGCCCCAA
CGGCTGAACTGTTTTTCCTGCTCTTTCTGTGGCGTTGCCCTACTGCTGTA
CCCCCGTCTCTCGTCTTATTTCTGCTACTGTACGTGGACAGGGAAAACGT
CTCAACCCCACGAAGAAGTGCCCGCACAACATCAACCAGCCACAGGAAAC
CGGCCGGTACAACTAGGAGTCGCGTCGAACAAGCATACAAGGTTCAAGAG
TGCATAAAAAAAAGAAGAGAGGCTTCCTGTACAACGTAATCTCCCAATGC
TACTGGGCCGAGGCCGTGCCACTTCTTTGTTAGGCACTTGACGGCTGTAG
TTTAGCGCTTACGCGCGTCGGCAACGATTAGCTAGCCACGCCGATGCCTC
TTTGACTAAATTGGTGGATGTGACATACTCCAGGATAGGCGAAGTCAAGG
CTCGCGAGTGTTGGTTGCCACCCCCTCTCCTCTGTCCAAAAATCCTACAG
CTGTATTCACATATCGACAGAAACCTGGCGAGGTGTACTGGTAGGCTACT
GTAGGCCAGATATTTACGTTGCTGTAACGTGCCGGTTTAATTTGTGTGCC
AACCAGGAGGGTATTCTGTATTATGTTCACCTAATTACGTGTGGCACAAT
ATTACTTATTAAATAATGATAGGGAAGGAGGCGTAAAAAAAAAAAAAAAG
CCGGCGGCGGTAGTAGCGTAATAGCTCTGGCGCCTATGGTGTGTAAATGA
GGGAGTAAACTTTCTTGCTTCGGCTACTCGAAGTGATCTACTCGAAGTAC
ACAGTGTGAAGTACACAGTGTGAAGGACACAAAACATATGGATTATTTAA
CATGCCTAGTACAAAAAGAGACATAGGGGGAGGGGGGGGGTTTGCCCGGA
GCTGACATAAAAAAATGTACATTTTATAGTATTGTGTTGCACATTTTAAG
AATTTATTTTAACGTCGAAGAAGCAGGGTATAGACATGGTGCGCCTCGAT
TCCAAAATAATCGTGGGAAAGCGATGGGTACGTGTGGGGGAAAGGTGTTG
AGAATCCACGTACTTCGTATGATCCATCGCCGAAGGCCGTTATTCAGCAA
TCATCACTTTCCCGTTTATCTGACAGTTGTGTTGTTACAGAGGGTTTCCG
TTGTGAGTTGCTGTTGCGTGGTTGAGTAGTGAGCGTGTCATACCCTCTTG
CCACGTGCCATTGGTTCAAGGTTCAGCGCTGCTTGTACCCGAGGCAGCGG
CGGTACATAACAAATAGTACCATCAGCAACCTGCACGTGGCTTGTATTTG
CGTCCAAAAGGCGACTTGCGTAAGGGTAAAGGTGCAGGAAGAAGGCGAAA
TAATAGGATTTAAGTTTGGAAGTTCATGTTGTATTGCGGGATATAATAAG
TAGGACAGCAGTGTAGATGGGTGTACCCCCCCCCGTGCATTACGATCCGG
TGTGGAACATTCATATGGAGTACATCTTAGTGATAGCGGCAAATAGCGTT
GTGCTTTGCGGTCACCGTGGTACCATTGTGCTTCGAAATAACCACCCGCG
CCGAACCATTGCTTGAAAAGCCGTCAGTTCTGTCTGCGCTTGTGAGTTCA
TGCAGCAGAGATCATCAAGTAAGAGAGCGCTGTATTGTGTGCATGGAAGT
GGGGAAGGATGGGCTTTTGTCTTTGCTGCACACATGTGCGTTGATAGCAT
GCCTTGTGGCGTATTTACGATGTACTCCGCCAGCCCCCAGTATAGTGGCT
CATGCTTTTTGAGTCAGTCGTGCCGCCACAAATGCGAGTCGGAAACGTGA
AGCGTACACGAGCGCGCGTTGCACGATTCTTGGTGCTGTATAGCTTGTAT
CTGGCGTTGCGACGTGCAAAAATGACCCCATTGTCGTGCAGCAGGATGTA
GGATGTGTCCAGCTTGCAGTGTCGTAGGTTTGTTGAGTCGGTTATTGGCG
TGTACAGTAGGAGAATACCGGTATTACCGGCGCATAGATTTCTTTCGTTT
GGTCTTCTTAAAAGAATGTTTGCAAAATGTTTTAACTCATGTTTCGGACA
ATCCCGTGATTCACCCCTCCTTGGCGCACCTGGCACTCAGCTTACAGCTT
ACAGGGTTGGTTGGCGAGATTGATTTATAAGCGATTGACCAAAGTGCAAG
CAACAATACGTGACCCCTTTGAGTTTTTCGGTCAGTCGTCCCTCCCAAGA
GGTATCGGCTTGTCGTACCCGGCAGTCGTCAGCGGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig75:454778..460914+

>mRNA_P-littoralis_Contig75.145.1 ID=mRNA_P-littoralis_Contig75.145.1|Name=mRNA_P-littoralis_Contig75.145.1|organism=Pylaiella littoralis U1_48|type=CDS|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig75:454778..460914+ (Pylaiella littoralis U1_48)
ATGTGCACGCTCAACGTCAACGCGCCAATCTTTCAACCGAGCCGGCAAGT
ATTCCAGCCGATCTTCAACTTCGGAGAGCAAGCCTATGTGCGCATAGTCG
ATTCTGACGAGTACCGCCAAGAGCTCCTGTTCAATGACTTCAATCGCGAG
GAGGTGGCAGATGAAGACTTGTTCAATCCAGCAGTGTACCCCGTCTCCGC
AGCAGACCACGAAGAACTAGCCGCCGCTGAAAGTTTCAACATGGAAATGG
CCGAGCTGGCTGAGCTGGAGCACCAGCACGAGCTTCGCTCTCTTCTGATT
GCGCGTATCACTGCTATCCAGCAAGGAACAACCGGCAACCAGCGTCCGGC
GAAAATCGCTTCCTTAAACAACGCCATGTTCATGCCCAGAGGCGCACCGG
CATCAGGGCTCAAGGGAAAACGTCTCAACCCCACGAAGAAGTGCCCGCAC
AACATCAACCAGCCACAGGAAACCGGCCGGTACAACTAG
back to top