mRNA_P-littoralis_Contig75.139.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.139.1
Unique NamemRNA_P-littoralis_Contig75.139.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig75.139.1 vs. uniprot
Match: D8LF11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF11_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 4.970e-75
Identity = 165/300 (55.00%), Postives = 198/300 (66.00%), Query Frame = 3 
Query:    3 MISLRAMRGTRIIQRCLPHCRREGSAAYFALRTPPPVAHNGSRRSTASIGSWTSGPGSR-SIAVSGSSIDDFRVATSSSA-TAVVLHQRRHLSGRSGEGVRGRRP-TDKRKTSSDSAKDSDGKAT-----YTFLGQDDLGQLSSESKGKPKTDTAESKVQASGKDGEEDVDSANVTMWQRWKNTRAKMKLLWKQYGLVWIGTFTVLYIGMLGGVYVVLDTGLVASDVDTSAAIRMVADQLGAQNNPTVMWLQMTIETNPKANTLLKAVIVNEFLEFPRDIVAIAATPSIARAIGRAPPKS 878
            M++LR  RG  + QR L    R   +A  + +   P A N +  S AS GS +S    R S  VS    +D R   S     AV L   +HLS  SG G R +R   DKR+ S+                YTFL +DDLG+LS+E K   KTDTA      + +  EE VD+ NVT+WQRWK  RAKMKLLWKQYGLVWIGT+TVLY G L G+YVVLDTGLVASDVDTS AI+++AD +GAQ+NP+V WLQ TI+TNPKANTLLKAVIVNE +E+PRDIVAIAATPSIARA+GRAPPK+
Sbjct:    5 MVALR--RGAGVFQRGLRQQSRPRGSACLSQQAKVPRACN-TAVSVASFGSRSSPTAGRWSACVSVHRNEDLRPLVSPVVPVAVALRSVQHLSS-SGRGGREKRGGADKRRRSNTXXXXXXXXXXXXXXEYTFLEKDDLGRLSNEPKSGLKTDTA------AARGAEEKVDATNVTLWQRWKQARAKMKLLWKQYGLVWIGTYTVLYFGGLAGIYVVLDTGLVASDVDTSHAIQVLADYIGAQDNPSVTWLQNTIKTNPKANTLLKAVIVNELIEYPRDIVAIAATPSIARALGRAPPKA 294
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BLAST of mRNA_P-littoralis_Contig75.139.1 vs. uniprot
Match: M4BYX8_HYAAE (DUF1279 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYX8_HYAAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.320e-6
Identity = 41/121 (33.88%), Postives = 65/121 (53.72%), Query Frame = 3 
Query:  537 KMKLLWKQYGLVWIGTFTVLYIGMLGGVYVVLDTGLVASDVDTSAAIRMVADQ--LGAQNNPTVMWLQ-------MTIE-TNPKANTLLKAVIVNEFLEFPRDIVAIAATPSIARAIGRAP 869
            ++K LW++YG V +GT+  LY  +LG +Y+ +D G V +D   ++  +   +   L +  N  V W +       + +E  N K  + L A I  +F E  R  + +AATP IAR +GRAP
Sbjct:   92 RLKDLWRKYGAVAMGTYFSLYGAVLGSIYLAIDQGWVHTDTGRNSNDKPSDENFDLVSTTNKFVKWAEDLGIAQYLEVERVNAKTGSFLLAWIATKFTEPLRLALTVAATPRIARFLGRAP 212
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BLAST of mRNA_P-littoralis_Contig75.139.1 vs. uniprot
Match: A0A8K1C653_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C653_PYTOL)

HSP 1 Score: 58.5 bits (140), Expect = 3.520e-6
Identity = 43/138 (31.16%), Postives = 70/138 (50.72%), Query Frame = 3 
Query:  507 MWQRWKNTRAKMKLLWKQYGLVWIGTFTVLYIGMLGGVYVVLDTGLVAS---------DVDTSAAIRMVADQLGAQNNPTVMWLQ-MTI-------ETNPKANTLLKAVIVNEFLEFPRDIVAIAATPSIARAIGRAP 869
            M ++ K+  +K+K LW+QYG+V +GT+  +Y  +LG +YV ++ G V++         + + +A   +V        N  V W + M I         N K  + + A +  +F E  R  V +A TP IAR +GRAP
Sbjct:   85 MVEKGKSGWSKLKELWRQYGMVAVGTYFSMYFTVLGSIYVAIEQGWVSTKRTSRSEGENGEANADFNVVT-----ATNKVVTWAEDMGIAKHLDLQRVNAKTGSFVIAWVATKFTEPLRLAVTLAITPRIARLVGRAP 217
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LF11_ECTSI4.970e-7555.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
M4BYX8_HYAAE2.320e-633.88DUF1279 domain-containing protein n=1 Tax=Hyaloper... [more]
A0A8K1C653_PYTOL3.520e-631.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:443189..447966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra77259
PFAMsDUF1279
Model size1310
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorymitochondrion
Exons5
Evalue3.77e-08
EggNOG OGs2CK7H@1|root,2S0QZ@2759|Eukaryota,3QC55@4776|Peronosporales
Ec32 ortholog descriptionDomain of unknown function DUF1279
Ec32 orthologEc-21_006290.1
DescriptionProtein of unknown function (DUF1279)
Cds size879
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.139.1prot_P-littoralis_Contig75.139.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 443618..447964 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791550.6593394-UTR-P-littoralis_Contig75:443188..4436171680791550.6593394-UTR-P-littoralis_Contig75:443188..443617Pylaiella littoralis U1_48UTRP-littoralis_Contig75 443189..443617 -
1680791550.7506099-UTR-P-littoralis_Contig75:447964..4479661680791550.7506099-UTR-P-littoralis_Contig75:447964..447966Pylaiella littoralis U1_48UTRP-littoralis_Contig75 447965..447966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791550.680896-CDS-P-littoralis_Contig75:443617..4438421680791550.680896-CDS-P-littoralis_Contig75:443617..443842Pylaiella littoralis U1_48CDSP-littoralis_Contig75 443618..443842 -
1680791550.69184-CDS-P-littoralis_Contig75:444398..4445461680791550.69184-CDS-P-littoralis_Contig75:444398..444546Pylaiella littoralis U1_48CDSP-littoralis_Contig75 444399..444546 -
1680791550.714561-CDS-P-littoralis_Contig75:444750..4448391680791550.714561-CDS-P-littoralis_Contig75:444750..444839Pylaiella littoralis U1_48CDSP-littoralis_Contig75 444751..444839 -
1680791550.7261875-CDS-P-littoralis_Contig75:446562..4468271680791550.7261875-CDS-P-littoralis_Contig75:446562..446827Pylaiella littoralis U1_48CDSP-littoralis_Contig75 446563..446827 -
1680791550.736643-CDS-P-littoralis_Contig75:447812..4479641680791550.736643-CDS-P-littoralis_Contig75:447812..447964Pylaiella littoralis U1_48CDSP-littoralis_Contig75 447813..447964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.139.1

>prot_P-littoralis_Contig75.139.1 ID=prot_P-littoralis_Contig75.139.1|Name=mRNA_P-littoralis_Contig75.139.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=293bp
MISLRAMRGTRIIQRCLPHCRREGSAAYFALRTPPPVAHNGSRRSTASIG
SWTSGPGSRSIAVSGSSIDDFRVATSSSATAVVLHQRRHLSGRSGEGVRG
RRPTDKRKTSSDSAKDSDGKATYTFLGQDDLGQLSSESKGKPKTDTAESK
VQASGKDGEEDVDSANVTMWQRWKNTRAKMKLLWKQYGLVWIGTFTVLYI
GMLGGVYVVLDTGLVASDVDTSAAIRMVADQLGAQNNPTVMWLQMTIETN
PKANTLLKAVIVNEFLEFPRDIVAIAATPSIARAIGRAPPKS*
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mRNA from alignment at P-littoralis_Contig75:443189..447966-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.139.1 ID=mRNA_P-littoralis_Contig75.139.1|Name=mRNA_P-littoralis_Contig75.139.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4778bp|location=Sequence derived from alignment at P-littoralis_Contig75:443189..447966- (Pylaiella littoralis U1_48)
CAATGATTTCTCTCCGAGCGATGCGAGGTACTCGTATTATACAGCGATGT
CTCCCGCACTGCCGAAGGGAAGGTTCTGCCGCATACTTCGCCCTGCGAAC
ACCACCCCCTGTAGCCCACAACGGAAGCAGGCGCTCCACGGCTTCCATCG
GCAGGTGCGAGAGAACTACTGTTGTTGCCCTTTCGCCTCGGTTTTTCGTC
ATTAACAGCAGTACCGCATTTATCGATTACCAGTGAGGCAAACACCACAC
GTAACATGAACTTGAATCAAAACTTCTTACATATGATCTGTGTCCCGCGT
CCAAAAAGGGCTGCTCAATGTATGACAGTGCTGCTGTACGGATATTGTTG
TTTTTTCTCACATTATGACAACCCACGAGTACGTTCGGAGACGTGCGCAG
AGCGCAGAGCCTGATGGCATTTTATTTTGGTCTCGAAATTCGTCGTGAGT
GTCACATGCCATTGCTGTAAGAGCCCGTATTAACAGAAGGCCAAAAAAAC
GAAATGGCGAAAATGAAAACGAAAAAGGGCTCTGATTGGTCGGTAAAAAA
ACGAAAGAGGCGTGTTTTCGTTTCAACGTCCTCCGGGGAGGCGTTCCGTC
GTATTCGATTTCGCAAAAATTAAGTGTTTCGGACCTTTTTTTTTTACGAA
AACGCAAACGAAATGCATGGAGTTTGGTAACCTGGGAGGCTTGCCCATGA
GCCTCCCAGGCAGCGAACTCCTTCACACAGACTGCGACTGCGGTACACGG
CGGTGCAACAGGCACCAACCCGAACAGAGCGAGGCCCAATCCACACACTA
CAGCAGCGCAGCAGACAGCGCCGAGCCGTCATACCCGCCAGTCAGTGCAA
CAGACAGCACACGGCCGTCTACGATACCCACACGCTGACACGATGCATTC
CACCGCGTTATTTGAAATTGGGCCCCGCGCGTTCTGGGTTTACATCATTT
TTGGCGTTATCTCCTCCATTCCGCTGCTCCAGCTCCTCGCAGCAGAAACG
CGTTAATACCGAAATGGAGTTTTTCATTTTCTTTTCCAGAAGAACGAAGT
TATTTCGTTTTTGTTTCCCCTATTTCTTTTTTTTGGCCTTCCGTTAATCC
CCGCTCTAACCTTGGCCCCACCAATTGCCCCCCGAACAGTTGGACTTCGG
GTCCAGGTAGCAGATCGATCGCAGTCTCCGGCTCAAGTATTGACGATTTC
CGAGTAGCCACCTCGTCATCAGCGACTGCAGTAGTGCTACATCAGAGACG
ACACTTGTCTGGCCGCTCAGGGGAAGGGGTAAGAGGTCGAAGACCCACGG
ACAAGAGAAAGACCTCATCGGATAGCGCGAAGGATAGCGATGGGAAGGCG
ACTTACACCTTCCTTGGGCAGGATGATCTCGGTCAACTGTCAAGCGAGTC
GAAGGTTAGCGAAGGTTGATAAGTCATGAAGAGTTTCCTGTTCTAGCCGA
TGAGCGTGTTCCGCTCATCAGCGCAATTACGCCGCATTTTCCGAGTTCCG
TCGTTGGTGGTATGCTATATGCTATGGTAGATGACTATAGGAGCCGGAGG
CTTGGAAGGCAACTCTAGTTCGACCGCACAACCAGGGTGTTGCCGGGTTT
CAAAGTATGGAAGGGTTAGGTACGAGTGAGGGGACGCTTGTTTCGGTCCC
TTCTTCGCGCTGCTGACATGCACACACGACACAGGACAACACCGACAGCT
GAGAACAGACGTGCAATCTTCTTGTATAGCCTCACACCATCCCTAGCAAG
GAAGGAGTCGAAGAAGGAACGGGAACTGGAGACTATGAGTTAAAATCGCG
TCATGCTGTCATCAGTTGCAACCCGGGGCTGCTTCGTCAAAATTCCTTTT
GCCCTCCATGCCAACAGCGCCTGCTCCTCACACAGCGTGCACAGCTGTGG
GTGCACCCACAGCAGCAGCTATTGTGTACATCTGGCTATCCCAAGCAACA
ACCCCCATCCAATTCCATGACCTGTACGCTGAGCATGACAAAATATTCGG
ACTCGGAAAATGTCCCGACGCGCGGTCGTATCGAGTGTACCAGGTAGGTT
GTGAGATGCGCTGGCTGGGAATCCTGGCTGTATTTTTATTTTTTTCAAAA
CGTTTCTTTTTCTGTGGGAAAAAATACAGCAGAACAGCAGCAGCAGTGTT
TTTCCTGCTTCATTCGCACTGTGCTGCAGGTGACCGCGGGTCGGGACATT
TTCCGAGTCCGAATATTTTGTCATGCTCAGCGTACAGGTCATGAAATTGG
ATGGGGGTTGTTGCTTGGGATAGCCAGATGTACACAGTAGCTGCTGCTGT
GGGTGCACCCACAGCTGTGCACGCTGTGTGAGGAGCAGGCGCTGTTGGCA
TGGAGGGCAAACGGAATTTTGACGAAGCAACCCCGGGTTGCAACTGATGA
CAGCATGACGCGATTTTAACTCAAAGTCCCCAGATTCCACTTCCTTCTTC
GACTCCTTCCTTTCTAGGGATGGTGTGAGGCTATGCAAGAAGATTGCGCG
TCAGTTCAAGTCCAGCTGTCAGTGTTGTCCTGTGTCGTGTGTGCATGTCA
GCAGCGCGAAGAAAGGGCGGCTTTCAACGTCCCCGTACCCACACGAAGAC
CTCCCATCTTTTGAATCCCGGCAACACCCCAGCGTGGGAGGCTACCTCCA
AGAATCATTGAAACATGTGTCCATAAAAAATAAAATGATTTAGAGTTGCC
TTCCAAGCCTCCGGCTTTATAGTCATCTACCATAGGCGGTATGTTGAGTG
GACCTTGCGCCTTGCGCCTTCCTTTTGCATCTACCTTTGGGAAAACCATT
ATTGCACAAGCTAAAGATCACACACAACTACCGTCAAGAAGCTTGGGAGA
GACTCATCAACATGTCATGTCTTCATCCTGACCAAGGAAGGTGTAAGCCG
CCTTCTCGATATCCTTTCCTATCCGATGTGATTGATTTTTTCACAGCCTC
ATGTTACGATCATGGACCAACGACGTTAAAATCTCGGCTACATACAATAC
AGACGAGGGTCAGACTGCTTTGACCTTGCCATCACCTGGTTTTCTGCGTT
GTCGTTGCCTTTCTTTCATGTTGTCCTTTTACGCCGTTGAGTCTACCCGC
TACATTTTTCCGAACAACCCAACGCAGGGTAAGCCCAAGACGGACACGGC
GGAAAGTAAGGTGCAAGCTAGTGGGAAGGACGGGGAAGAAGATGTCGACT
CCGCGAACGTGACCATGTGCGTTCCGTGATCCGAATGTCTCACAAATTAC
AGATTGGTCATTCCATGTGTGGGTGTGTTTGGCAACGGCGTGCTGGGGTA
TATCACAATATTTCTTGATCAGTTGAGCGTGAAGGCATACCGTGATTTTA
TTTTCTGAGCCTGGGAGTGATTTTGAGTGATGGTCGTGCTGTTGTGTCTT
ATTTCTTGCACTGAGAGCAGGTGGCAGCGCTGGAAGAACACGAGGGCCAA
GATGAAATTGCTGTGGAAACAGTATGGGCTTGTTTGGATCGGGACTTTCA
CTGTTCTCTATATCGGAATGCTCGGAGGGGTCTACGTCGTCTTGGACACT
GGCTTGGTAGCGTCGGATGTGAGTTCAAACGCCCAGCAGGGGACAGTAAT
TAGCCGTAGCGCTGAAGTAATTGATGGTGCGGCAATGACAGCGCTGGGCG
AAGATCTACTTGCTGTTGTGAAAACTGACGGTGCGTGTACGTTGGTCCCC
TCAATGGTGGAGGAATAGGCTTTTAACCGAAAAGTTCTGGGTTCAAGTCC
CAGGTGACCCAAGTAAAGAATAATAAATTTAAAGTTTTATTATTTTATTC
TCTGTAAGATATATTTAGTATCTCTAGTCATGCCCTCCCCTCGAAAGTGC
GAGAGACATCAGCCTGCGTACCCCTGCCATCTCCGCCGTGACCGTTGGCA
CATACGCGCGCTACGAACAAGACGCACGTTATCGTCTTGAAAAAAACTCT
GTTTTGGATCACGGGCGCGTCACGCGCGCCGTGAGCTCACGGTGAATGCC
TGCGATGGCGTGATTGACAGCACTTCGTTTGCGAACACATGTTGATGGAT
GCGACAACATCTCCTTGAACGAGTTGCCGTTCCCAGTCAATGATTGCTCG
GTTGGCGTTTTGCTCTTTCGGCAGGTGGACACGTCTGCTGCGATTCGAAT
GGTGGCAGATCAACTTGGCGCTCAAAACAACCCCACCGTGATGTGGCTGC
AAATGACCATCGAGACGAACCCGAAGGCTAACACGCTCCTCAAAGCCGTG
ATTGTCAATGAGTTCTTAGAGTTCCCCCGAGACATCGTGGCGATAGCTGC
CACGCCGTCCATCGCTCGAGCCATAGGTAGAGCTCCACCCAAGAGCTGAG
AATGCGTTTTTTGTCCTGGACATCTGGAGGGACGCAAGCGTTGGTGCTCT
CTCTTTCGTTTTGGCCCCTTCGGAACTATGCGAGCATTTCATTCGAGGCA
TGCCTTTGAAAGTTGCGTGGGTCGCTTTCGGAGACCTGAAAGAGCGCGTC
ATAAGCCTGGTGAAAAGAAAAAAAGCACCGAGCATTCTCAAGCGTGTTCC
GTGCTGTTGCTCGGGCCTCGTGCCATTGATAGTCGAGGTGTGCGCCTTGA
GAATGAATGTGAAGCTTTTGATGTGTCCGGTGCGATTCACGCCTGCAGGT
CATGCTCGAAAAACAAAACTATGCACTCCGCAAGTACAGTGGTGATATGC
GTGAATGTTGCGACAGACATCCAAACATTTCAAATTCCCAGATGTTGCTT
TTGCTCATCCGGCACGCGCCGAATGATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig75:443189..447966-

>mRNA_P-littoralis_Contig75.139.1 ID=mRNA_P-littoralis_Contig75.139.1|Name=mRNA_P-littoralis_Contig75.139.1|organism=Pylaiella littoralis U1_48|type=CDS|length=879bp|location=Sequence derived from alignment at P-littoralis_Contig75:443189..447966- (Pylaiella littoralis U1_48)
ATGATTTCTCTCCGAGCGATGCGAGGTACTCGTATTATACAGCGATGTCT
CCCGCACTGCCGAAGGGAAGGTTCTGCCGCATACTTCGCCCTGCGAACAC
CACCCCCTGTAGCCCACAACGGAAGCAGGCGCTCCACGGCTTCCATCGGC
AGTTGGACTTCGGGTCCAGGTAGCAGATCGATCGCAGTCTCCGGCTCAAG
TATTGACGATTTCCGAGTAGCCACCTCGTCATCAGCGACTGCAGTAGTGC
TACATCAGAGACGACACTTGTCTGGCCGCTCAGGGGAAGGGGTAAGAGGT
CGAAGACCCACGGACAAGAGAAAGACCTCATCGGATAGCGCGAAGGATAG
CGATGGGAAGGCGACTTACACCTTCCTTGGGCAGGATGATCTCGGTCAAC
TGTCAAGCGAGTCGAAGGGTAAGCCCAAGACGGACACGGCGGAAAGTAAG
GTGCAAGCTAGTGGGAAGGACGGGGAAGAAGATGTCGACTCCGCGAACGT
GACCATGTGGCAGCGCTGGAAGAACACGAGGGCCAAGATGAAATTGCTGT
GGAAACAGTATGGGCTTGTTTGGATCGGGACTTTCACTGTTCTCTATATC
GGAATGCTCGGAGGGGTCTACGTCGTCTTGGACACTGGCTTGGTAGCGTC
GGATGTGGACACGTCTGCTGCGATTCGAATGGTGGCAGATCAACTTGGCG
CTCAAAACAACCCCACCGTGATGTGGCTGCAAATGACCATCGAGACGAAC
CCGAAGGCTAACACGCTCCTCAAAGCCGTGATTGTCAATGAGTTCTTAGA
GTTCCCCCGAGACATCGTGGCGATAGCTGCCACGCCGTCCATCGCTCGAG
CCATAGGTAGAGCTCCACCCAAGAGCTGA
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