mRNA_P-littoralis_Contig75.136.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.136.2
Unique NamemRNA_P-littoralis_Contig75.136.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig75.136.2 vs. uniprot
Match: D8LF10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF10_ECTSI)

HSP 1 Score: 735 bits (1897), Expect = 6.510e-254
Identity = 447/705 (63.40%), Postives = 508/705 (72.06%), Query Frame = 1 
Query:  127 MEWRDLEVWRRQRSYVGAELRKDAPDHVARLGLATSFVFVAGMAEGARVSALKGDLKFPIRYAVYNVIPSFVGGKVPASSVAAAMASPPPLRACTRAAAHAANLRALRTAVAGYTVLSIVFQVALAGGKGTDAYQQAVAEGFEVPSMSTSDFSGSDGSAGGVVRLCGARGLEPALKAAVAGRGGYRTPILPVVISGVGSGPSGHTSSDGNLISRAASSLPAGALSAVVERSPRPCYHRIDHDRLFCREAWQPVAAEAAEVGVNSNDREIVLVLEADSLSSDVPQTLMSSPVKVAAVAGLCRGGGSGAGGGLGKDEAVWGLAMLRKVLEENR-ERDGGRVAGVLLAERRLIDVEGSTT--VSINARAALLLSVLSWAQQCSAE--FVAHGAGASSDGHIPSAGDETGASTAETTATMTPEDDTAGRAVARHVAEVEPAVVNTADGV---DEELGADGEAVGENTS---------GAEEHATP-PDGEPRVASANTAARILGGLEHIGRGVRVVIAPIGQLRSAIGRPLGVLSAWVKEKGRR-VALPDAGVAANRVLFYDTDDNESFRWLAAQMLKTGWTVKRIGSEPLPKMPAAISDVPVLVHHCSDEKTLTAAAGHLSRDDNGPPVCAVVHGWDCGVEARRLLLGTR-------GGVSGVP-AEVICTAEVGEDLFQFVRWQLLSGATTEQVQKGLDDLFAPFHE 2160
            M WRD+EVWRRQR YV AE+RKDAPDH+ARLGLATSFVFV GMAEGA VSALKGDLKFP RYA+YN IPSFVGGKVPASSVA+AMA+PPP+RAC RAAAHAANLRALRTAVAGYTVLS+VFQVALAGG+G +AYQQAVA+G EVPS S S F   DGSAGGVVRLCGARGLEPAL A +AGRGGYRTPILPVV+SG   G  GH S        A+S L  GALSAV + SPRPCY+RI  DR+FCREAWQPV +  AE G  S+ REIVLV+EAD++SSD PQTLMS P +V            G  G LG+D+AVWGLAMLR+ LEE R ER  GR+A VLLAERRL+  EGSTT  VSI+ARAALLLSVLSWA+QC  +   +A  A AS      SA  E     AE  A +  + D AG   A   A+     ++T +G    DEELGAD  AV E            G +  AT   D + +  SA+TAAR+L  LE +GRGVRV  A +GQ+RS +GR LG +SAW+ E GRR    PDAG+  NRVL YDTDD+ESFRWLAA+MLK GW ++R  SE L       + VPVLVH CSDEKTLTAAAGH+ +  N   VCAVVH WDCGVEARRLL+G R       G  +  P AEVICTAEVGEDLFQFVRWQLLSGATTEQVQ+GLDDLF  F+E
Sbjct:    1 MAWRDVEVWRRQRPYVNAEIRKDAPDHLARLGLATSFVFVVGMAEGATVSALKGDLKFPTRYAIYNTIPSFVGGKVPASSVASAMATPPPVRACPRAAAHAANLRALRTAVAGYTVLSVVFQVALAGGRGMEAYQQAVADGLEVPSWSASGFG--DGSAGGVVRLCGARGLEPALVAPMAGRGGYRTPILPVVVSG---GGFGHRSGGWRSSDPASSFLSEGALSAVAKVSPRPCYYRIGGDRVFCREAWQPVVSALAEAGATSDSREIVLVMEADAVSSDAPQTLMSPPREV-----------KGGEGRLGEDQAVWGLAMLRRALEERRRERGAGRLASVLLAERRLVCAEGSTTTTVSIDARAALLLSVLSWAEQCHGDDDALADEANASPGNSGSSADGEPAGFVAEPIA-LGEDRDPAGLTTAAAAADK----LDTTEGFVAPDEELGADTAAVAEXXXXXXXXXXXXGVDGDATARADDDEQGPSASTAARVLVVLEGVGRGVRVAAARLGQVRSTMGRSLGAVSAWLVENGRRRPTTPDAGI--NRVLVYDTDDDESFRWLAAKMLKVGWAIERQTSERLRNE----AGVPVLVHSCSDEKTLTAAAGHVVKGAN---VCAVVHSWDCGVEARRLLVGARETVLPDEGRAARQPCAEVICTAEVGEDLFQFVRWQLLSGATTEQVQQGLDDLFGAFYE 675
[Close]
BLAST of mRNA_P-littoralis_Contig75.136.2 vs. uniprot
Match: A0A6H5K3C7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C7_9PHAE)

HSP 1 Score: 495 bits (1275), Expect = 1.250e-162
Identity = 322/572 (56.29%), Postives = 370/572 (64.69%), Query Frame = 1 
Query:  487 FQVALAGGKGTDAYQQAVAEGFEVPSMSTSDFSGSDGSAGGVVRLCGARGLEPALKAAVAGRGGYRTPILPVVISGVGSGPSGHTSSDGNLISRAASSLPAGALSAVVERSPRPCYHRIDHDRLFCREAWQPVAAEAAEVGVNSNDREIVLVLEADSLSSDVPQTLMSSPVKVAAVAGLCRGGGSGAGGGLGKDEAVWGLAMLRKVLEENRERDG-GRVAGVLLAERRLIDVEGSTTVSINARAALLLSVLSWAQQCSAEFVAHGAGASSDGHIPSAGDETGASTAETTATMTPEDDTAGRAVARHVAEVEPAVVNTADGVDEELGADGEAVGE---NTSGAEEHATP-PDGEPRVASANTAARILGGLEHIGRGVRVVIAPIGQLRSAIGRPLGVLSAWV-KEKGRRVALPDAGVAANRVLFYDTDDNESFRWLAAQMLKTGWTVKRIGSEPLPKMPAAISDVPVLVHHCSDEKTLTAAAGHLSRDDNGPPVCAVVHGWDCGVEARRLLLGTR-------GGVSGVPA-EVICTAEVGEDLFQFVRWQLLSGATTEQVQKGLDDLFAPFHE 2160
            FQVALAGG+G +AYQQAVA+G EVPS S S F   DGSAGGVVRLCGARGLEPAL A VAGRGGYRTPILPVV+SG   G   H S        A   L  GALSAV + SPRPCY+RI  DR+FC+EAWQPV +  AE G  S+ RE VLV+EAD++SSD PQ LMS P +V            G  G LG+D+AVWGLAMLR+ LEE R   G GR+A VLLAERRL+  EGS  VSI+ARAALLLSVL WA QC                    GD+   +   TTA           AVA  +   E +V        EE GAD  AV E   +T G +  AT   D + +   A+TA R+L  LE +GRGVRV  A +GQ+RSA+GR LG +SAW+ K   RR   PDA +   RVL YDT D+ESFRWLAA+MLK GWTV+R  SE L       + VPVLVH CSDEKTLTAAAGH+    NG  VCAVVH WDCGVEARRLL+  R       G  +  P+ EVICTAEVGEDLFQFVRWQLLSGATT+QVQ+GLDDLF  F+E
Sbjct:   11 FQVALAGGRGMEAYQQAVADGLEVPSFSPSGFG--DGSAGGVVRLCGARGLEPALVAPVAGRGGYRTPILPVVVSG---GGFRHRSGGWRSSDPAPCFLSEGALSAVAKVSPRPCYYRIGGDRVFCQEAWQPVVSALAEAGATSDSRERVLVMEADAVSSDAPQALMSPPREV-----------EGGEGRLGEDQAVWGLAMLRRALEERRREQGAGRLASVLLAERRLVCAEGS--VSIDARAALLLSVLCWAGQCQ-------------------GDDDALADEATTAA----------AVAGVLGTTEGSVAPG-----EESGADTAAVAEEEEDTMGVDGDATARADDDEQGRPASTAVRVLVVLERMGRGVRVAAARLGQVRSAMGRSLGAVSAWLAKNARRRPTTPDAAI--KRVLVYDTHDDESFRWLAAKMLKVGWTVERQTSERLRNE----AGVPVLVHSCSDEKTLTAAAGHVVEGANGK-VCAVVHNWDCGVEARRLLVEARETVLPNEGRAARQPSVEVICTAEVGEDLFQFVRWQLLSGATTDQVQQGLDDLFGAFYE 523
[Close]
BLAST of mRNA_P-littoralis_Contig75.136.2 vs. uniprot
Match: A0A6H5K1Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Z0_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.910e-59
Identity = 105/123 (85.37%), Postives = 114/123 (92.68%), Query Frame = 1 
Query:  127 MEWRDLEVWRRQRSYVGAELRKDAPDHVARLGLATSFVFVAGMAEGARVSALKGDLKFPIRYAVYNVIPSFVGGKVPASSVAAAMASPPPLRACTRAAAHAANLRALRTAVAGYTVLSIVFQV 495
            M WRD+EVWRRQR YV AE+RKDAPDH+ARLGLATSFVFV GMAEGA VS +KGDLKFP RYA+YN IPSFVGGKVPASSVA+AMA+PPP+RAC RAAAHAANLRALRTAVAGYTVLS+VFQV
Sbjct:    1 MAWRDVEVWRRQRPYVNAEIRKDAPDHLARLGLATSFVFVVGMAEGATVSTVKGDLKFPTRYAIYNTIPSFVGGKVPASSVASAMATPPPVRACPRAAAHAANLRALRTAVAGYTVLSVVFQV 123
[Close]
BLAST of mRNA_P-littoralis_Contig75.136.2 vs. uniprot
Match: A0A836CIR3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.780e-7
Identity = 73/221 (33.03%), Postives = 102/221 (46.15%), Query Frame = 1 
Query:  217 LGLATSFVFVAGMAEGARVSALKGDLKFPIRYAVYNVIPSFVGGKVPASSVAAAMASPPPLRACTRAAAHAANL-------RALRTAVAGYTVLSIVFQVALAGGKGTDAYQQAVAEGFEVPSMSTSDFSGSDGSAGGVVRLCGARGLEPALKAAVAGRGGYRTPILPVVISGVGSGPSGHTSSDGNLISRAASSLPAGALSAVVERSPRPCYHRIDHDRL 858
            LG A +F    G  EGA  +A    +KF   YA  N++PSFVG K+ AS+VAA +     + A T   AH  N        RA+RT VA +T +S+V ++A   G   D   + V  G  +  ++ S F   D S    VRLC + G   A+      +GG     LPV++SG      G    +G L+ R    +  GA  A      RP Y R+  D +
Sbjct:   14 LGSAAAFTLAVGTLEGACAAAPAARVKFAPAYAAANMLPSFVGQKISASTVAALLR----MDAATALLAHTPNAALQMAVCRAVRTGVAAFTGVSVVLKMAQRAGCERDRQLELVRSGAAL--VNPSRFV--DASGVQRVRLCDSSGFARAVT-----QGG----ALPVLVSG--GQRRGACDQEGELVQR----VQGGAAVAG-----RPFYRRVRVDEV 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.136.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LF10_ECTSI6.510e-25463.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3C7_9PHAE1.250e-16256.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1Z0_9PHAE1.910e-5985.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CIR3_9STRA1.780e-733.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:436030..443256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2795
Hectar predicted targeting categoryother localisation
Exons9
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006280.1
Cds size2055
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.136.2prot_P-littoralis_Contig75.136.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 436156..442642 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791550.5026963-UTR-P-littoralis_Contig75:436029..4361551680791550.5026963-UTR-P-littoralis_Contig75:436029..436155Pylaiella littoralis U1_48UTRP-littoralis_Contig75 436030..436155 +
1680791550.6210923-UTR-P-littoralis_Contig75:442642..4432561680791550.6210923-UTR-P-littoralis_Contig75:442642..443256Pylaiella littoralis U1_48UTRP-littoralis_Contig75 442643..443256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791550.5147877-CDS-P-littoralis_Contig75:436155..4361761680791550.5147877-CDS-P-littoralis_Contig75:436155..436176Pylaiella littoralis U1_48CDSP-littoralis_Contig75 436156..436176 +
1680791550.5281708-CDS-P-littoralis_Contig75:436741..4368081680791550.5281708-CDS-P-littoralis_Contig75:436741..436808Pylaiella littoralis U1_48CDSP-littoralis_Contig75 436742..436808 +
1680791550.5442555-CDS-P-littoralis_Contig75:437087..4371811680791550.5442555-CDS-P-littoralis_Contig75:437087..437181Pylaiella littoralis U1_48CDSP-littoralis_Contig75 437088..437181 +
1680791550.5540688-CDS-P-littoralis_Contig75:437587..4377711680791550.5540688-CDS-P-littoralis_Contig75:437587..437771Pylaiella littoralis U1_48CDSP-littoralis_Contig75 437588..437771 +
1680791550.5636802-CDS-P-littoralis_Contig75:438014..4381211680791550.5636802-CDS-P-littoralis_Contig75:438014..438121Pylaiella littoralis U1_48CDSP-littoralis_Contig75 438015..438121 +
1680791550.5735407-CDS-P-littoralis_Contig75:438403..4395861680791550.5735407-CDS-P-littoralis_Contig75:438403..439586Pylaiella littoralis U1_48CDSP-littoralis_Contig75 438404..439586 +
1680791550.5841444-CDS-P-littoralis_Contig75:439970..4401241680791550.5841444-CDS-P-littoralis_Contig75:439970..440124Pylaiella littoralis U1_48CDSP-littoralis_Contig75 439971..440124 +
1680791550.599595-CDS-P-littoralis_Contig75:442050..4422011680791550.599595-CDS-P-littoralis_Contig75:442050..442201Pylaiella littoralis U1_48CDSP-littoralis_Contig75 442051..442201 +
1680791550.6101573-CDS-P-littoralis_Contig75:442548..4426421680791550.6101573-CDS-P-littoralis_Contig75:442548..442642Pylaiella littoralis U1_48CDSP-littoralis_Contig75 442549..442642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.136.2

>prot_P-littoralis_Contig75.136.2 ID=prot_P-littoralis_Contig75.136.2|Name=mRNA_P-littoralis_Contig75.136.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=685bp
MEWRDLEVWRRQRSYVGAELRKDAPDHVARLGLATSFVFVAGMAEGARVS
ALKGDLKFPIRYAVYNVIPSFVGGKVPASSVAAAMASPPPLRACTRAAAH
AANLRALRTAVAGYTVLSIVFQVALAGGKGTDAYQQAVAEGFEVPSMSTS
DFSGSDGSAGGVVRLCGARGLEPALKAAVAGRGGYRTPILPVVISGVGSG
PSGHTSSDGNLISRAASSLPAGALSAVVERSPRPCYHRIDHDRLFCREAW
QPVAAEAAEVGVNSNDREIVLVLEADSLSSDVPQTLMSSPVKVAAVAGLC
RGGGSGAGGGLGKDEAVWGLAMLRKVLEENRERDGGRVAGVLLAERRLID
VEGSTTVSINARAALLLSVLSWAQQCSAEFVAHGAGASSDGHIPSAGDET
GASTAETTATMTPEDDTAGRAVARHVAEVEPAVVNTADGVDEELGADGEA
VGENTSGAEEHATPPDGEPRVASANTAARILGGLEHIGRGVRVVIAPIGQ
LRSAIGRPLGVLSAWVKEKGRRVALPDAGVAANRVLFYDTDDNESFRWLA
AQMLKTGWTVKRIGSEPLPKMPAAISDVPVLVHHCSDEKTLTAAAGHLSR
DDNGPPVCAVVHGWDCGVEARRLLLGTRGGVSGVPAEVICTAEVGEDLFQ
FVRWQLLSGATTEQVQKGLDDLFAPFHEVGAVKI*
back to top

mRNA from alignment at P-littoralis_Contig75:436030..443256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.136.2 ID=mRNA_P-littoralis_Contig75.136.2|Name=mRNA_P-littoralis_Contig75.136.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=7227bp|location=Sequence derived from alignment at P-littoralis_Contig75:436030..443256+ (Pylaiella littoralis U1_48)
CGCACGAACACGAGCAGAGAAGAGGGCTTCTTTGAGGCGTGTAGCTCTCT
ACACTTCTCGGCTGTAGAACGCTCGCGGAAAGGGACAACAGGGAGACAGA
CGTGGGCCAGGAGAGCGGGCATTCTTATGGAATGGCGAGACCTTGAGGTA
CCCGCCATGACACATTTTCTTATATACTTGAAGTAATGACATTCGCATTA
TACCCATCATTCAGTCTTTGTTTGTCTACGATGTTGACTTCTGAGCATGA
TACAATGACAGATATCATATCATACGATATGATCCTACAAGTAGTCGCCA
ATTGCTCATGTATCATAGCAGTCCAGCAGCGGTTGCATCTCTGCCTGCTG
CCCGTCTGCCACCCTGGATACTTCTATGCACACACTGCTATTTGATGTCC
ATGAACATGAAAACTAAGCCTTGCAATGGCTTGTAACGTTTTTACGTCCT
GACCGCCTAGTCTACATCCGAAGTACGAAGTACTTCGTAGGACCCTTTCA
TGTGTCATATGATAGTATGTCACAAACTAGGGCTCAGCACTTTTTGTGAC
CACGGGCTAGATTTTGGCGATGAGCAAATGTGAGAATCAACAAACATCCG
ATGAGCTGATGGACAACCTTCGAGTGTACCGGAGTGAGGTTATCCCATGG
GATGAAATGAGGCGATAGTTTAACCTCCACCGCTACGCCTCCTATGCATG
TGTGCTCTCTAGGTATGGCGAAGACAGCGGTCGTACGTAGGGGCGGAGCT
TCGGAAGGACGCCCCAGACCACGTGGCTCGTGAGTGTGCAAGGCACTTGA
TGTTCGTTCAAACCATAAGCCCATCTAATGACACAGCAGACGCTTACCAT
ACGCCCATCTAATAACACAGCAGATGCTTGAATGTCGCGGTCAAAGGGGT
CATTCTCATGGCGAACCCTCCAGCGCCTTTCCAGAATAATCAGGAGCTTA
CGCCCAACCTGGCCGCTGCTTTGGTTAATCCTTACACGGAAATTGAACGG
CGGCCTTTCGAAGGAGTGTTTGGTATACCGCCAATGCACACCGACTCCCT
TTGAGCAGGTCTTGGCCTCGCCACCAGCTTCGTGTTCGTGGCAGGCATGG
CGGAGGGCGCTAGGGTCTCTGCCCTGAAAGGGGATCTTAAGTTTCCAATC
AGGTACTGCTGTAACGTGTATTACCGGAACCCTCGTCTTCGTTGCCCTGC
TACCTTCTCAAACCAGTGTTAAGCAATGTCTGATGTGTACCGAATTGTGC
GTTTACTGCAGCTGTTGTTCAACCGCTGTTTATCGTTGCACGGCGGTGGA
GCAAGTGTTGTATTACCGAGGGGGCGATGCGGGCGTTCAAGGTGCAAACC
ACCGTCGGACTATATCGTTTGGGTGTACTTCATATCATGCTTAGTACCAC
GCAATACGAACGCCTCGTACCACACAGCTTTTTACAGACAGGATGCCTTC
AGTTCAACGGGGTCAACCTTTCGTACCCTGCAACCCCTGCCGTAGCATCA
AGGTCGTCCATGTTTCATTCAATGCTGACAGCGCCCGTCCTCCGCTCCAT
TGCCCCAGGTATGCAGTGTATAACGTCATCCCTAGCTTCGTGGGAGGAAA
GGTGCCAGCGTCGAGCGTGGCTGCTGCCATGGCCAGCCCCCCGCCCCTTC
GAGCGTGCACGAGGGCAGCCGCGCACGCCGCGAACCTGCGGGCCTTGCGA
ACGGCCGTTGCTGGGTACACGGTACTCAGTATTGTGTTTCAGGTGCGCAT
ACCGACTCGCGTTTGCCCGACTGCAGCAGCTTTTTGTGCTCACCGTCTTG
CCGATCGGCCATTTGTTTTGTATGTGGAGCTTTGAGTAGACAAATCGTGT
TTGTAGTGCAAGATGCATCACACACCGTGAGGTGCGTTTGAACGCTGCTG
TCTTTTATGGGACACTAACCGGCCTACACCAGTCGCCTTCGATTGATCTA
CGCGATGCTGCGGTGGCATCGAATCTTTCCTCCAGGTCGCCCTCGCGGGA
GGCAAGGGAACGGACGCCTACCAACAGGCGGTGGCTGAGGGGTTCGAGGT
GCCGAGTATGTCTACCAGTGATTTCAGCGGGAGCGATGGGAGGTATGTAC
GACCCCTGAGAAACAAATCTGCACGCCGTGCGTTCTTTTCATACGTTTGC
CGTGGCGTTGATCGCAGCTTTCGGTTGACTTTCTTGAGCGTGGCCTAATC
AATCGTCTTCTAGAGTACCTGTACGTAGTCGTGGCTAGACGATGTACCTC
GCCTGTATGTTGCCGATTCCTCTGCGATTTCCCACCACTGCCATTTCCCA
CCACTTCGCGTCTTACTCGTGCTCCTCGTCGTGACGGTACGTCCTTCACT
TCTTGTCCCATGGACACCACCCAGCGCGGGAGGCGTGGTGCGGCTGTGTG
GGGCCAGGGGATTAGAACCCGCATTAAAAGCGGCGGTGGCAGGTCGGGGG
GGATACCGGACACCCATCCTACCGGTAGTAATTTCGGGCGTTGGGTCTGG
CCCATCGGGACATACCAGCAGCGATGGAAATCTGATCAGCCGAGCGGCGT
CTTCTCTGCCCGCGGGGGCGCTTTCGGCCGTCGTAGAGCGCTCCCCTCGC
CCTTGCTACCACCGAATAGACCATGACCGGCTGTTCTGCCGTGAAGCGTG
GCAACCGGTTGCGGCAGAGGCTGCCGAGGTGGGGGTTAACTCGAATGACC
GTGAAATAGTACTAGTTTTAGAGGCGGACAGTTTGTCTTCCGATGTCCCT
CAGACTCTCATGTCGTCTCCTGTAAAAGTGGCGGCGGTGGCAGGGTTATG
CCGCGGTGGTGGGAGCGGTGCTGGCGGCGGGCTGGGAAAAGATGAGGCAG
TATGGGGATTAGCGATGCTACGGAAAGTGCTTGAGGAGAACAGAGAGCGG
GATGGTGGAAGGGTGGCGGGTGTGCTACTGGCGGAAAGACGCTTGATCGA
CGTGGAGGGGTCGACGACGGTGAGCATAAACGCGAGGGCAGCGCTGCTGT
TGTCGGTGTTGTCTTGGGCGCAGCAGTGCTCGGCGGAATTCGTTGCGCAT
GGCGCTGGAGCATCATCAGACGGTCATATACCATCTGCAGGCGATGAAAC
GGGGGCGAGCACTGCCGAGACGACAGCCACAATGACCCCAGAAGATGACA
CCGCAGGCCGGGCTGTAGCGAGACATGTTGCGGAAGTAGAACCCGCCGTG
GTAAACACGGCAGATGGCGTTGATGAGGAGCTGGGGGCTGATGGTGAGGC
TGTTGGGGAGAATACCTCTGGAGCTGAAGAGCATGCTACCCCACCAGACG
GCGAGCCACGAGTGGCATCAGCCAACACGGCGGCGAGGATTCTGGGGGGG
CTCGAGCACATAGGACGCGGTGTTCGGGTTGTCATTGCGCCGATTGGACA
GCTCCGGTCCGCGATAGGTCGCCCGCTAGGCGTTTTGTCAGCGTGGGTCA
AGGAGAAAGGGAGAAGAGTCGCCCTCCCTGATGCGGGAGTGGCAGCAAAC
CGGGTGTTGTTCTACGACACAGATGACAATGAATCTTTCCGTTGGCTAGC
TGCGCAGGTAATTTTCGAGAGGGGGACCGTTTGCCTCAACGTTTCAAGAG
GGAGCTCGCAGAGAAGTTGCACCCATGAGGTGCTGTATGTTTTTCCCGTA
CCCGGGCGCTTGTATCATATAATGTTTCCACATGATCTCCATCACTGGAG
GATGCATGTTTTTTTACACCACTGCTGTGTGTGCATGTGTATCTGTTTTT
TTCATTCGTAGTTCGTCATTCAACAACGTTATTTTTTGGGCTTGGTATGT
GTGCTCAACAACTCTTAGCTTTTGCCTGTTTCTCGGCCACGTTAACGTGA
CCACGGTCGTGTATCACTCCTTCAAGTTTTGTAACGCTCTCGATGTACTG
CCCTCGGGTACCCTTGTGCTGAACGCCTACATTTTTGACAGATGCTCAAG
ACGGGTTGGACAGTGAAGAGGATAGGCTCTGAGCCGCTTCCGAAGATGCC
CGCTGCTATTTCTGACGTCCCCGTTTTAGTACACCACTGCAGCGATGAGA
AAACGCTGACCGCTGCTGCTGGGCACCTTTCTCGAGACGACAACGGTAAG
CTTGCCCGCCCGGCCGCCCATTTCTTTCCGTGTTTGCAGTGCCTTTATCC
CATCAGGACGAGCTTCGTCGGCGTTGCCTGTCTTGGGCGATCTATTATTT
TTTGGGAGGTATTTTCACATGTCGAGGTTACCAAGGCGTTCTGGAAGTTG
GGGCAGGCAGTACCAGTTCGGATACTGCGAGGAACAAGGTTGTGGGCGAG
TGGTGTGCATGACGGACCTGAGGCGATACGCAGGTCTTCCGGCGAAGTAA
TTATTGATGGTTAACTCATGCGATGAAGTTGGGGCAGTAGGAGCGAAAGA
TTTGAAAAAGGGAATATTCTGTGAGTAACTGCACGAAGCAAGCGGACATA
AAACGAATGCTTAATGTACAGTAAAGGGGTGCGAATAAAGGCAGAAATGC
ACTACCCCAAAGACTTGCACAACAAAGTTGAAGAGATTGCTGAGACCGAG
ATGTGGGGGCACAGATAGATGCTGTGTACCTTCCGCCTCATGCGGTGGAG
AGCGGGACACAACACGATAAACGGACATTTTTGTGACATTTTAACATGCG
CCGGAACAAACTGCAGATCAAAAGCGGACATATTTGATGGGCCAGAATGT
TAAGGCAGGACTTTTGGGGACGCCGGGCATCTTTCTCTTGGGCTCCGTGG
TAGTACTTTTGGCTCCACCGTAAGTTTTCTTTTCCTAACGTGTCAGACTT
CTAGATAAAAAATCCTGGCTGGTGCCCCCCCCTGACTGCTGTACACTCCC
TATCCACCCTCTCCCATTCCGCCTTAGGAGGCACAAACCTCTATTGGTTT
TTAGAGATCTCACGGCAGCTTCAACTCCTGTGTGGATGAAAACTGTGTGC
CCGACGCTGCAAATGCCTTGTAGCGCGAGATCGAGGTGCTCAGAATTGAC
ATTTTTAGCACCATCTTGCCGGGTTTTGGGCAAAACACCGCAGAAACTGT
GCTTCAGCTACGGACAGAGCAAGCTCGCCACAAGCAACCACACTGCTTCA
AATTGCCACAGTCTACTGATGTGGTGTGTGAGTGGCGTCTCATGCCTTGA
CAGCAGCAGCAGGCAACCAGGAACCCTTCTGGAGGTATCCGTGAGACCTG
TATCTGAGTGCCTGCAGTAGTCCGAAATTACGCCAAAATGGGAGATCTGC
GGGTGCGTTTGCGCGATAGTACCGTTCTCCGCATGTGTACCCCCGACTGA
CAAACGGATTTGACGCGAATTTAGCTGGCTTATCGGGCAACCTCCAAGGG
AAAAATCCTATTGAGATTTTTGATGGGACACAGTTCCAAAATTCTATCTA
CGGCGCAAAAAGCTACTAACAAGACGTATTTTCTGGTATTTGAACCCCCT
GCAAATAACGCTGCATTTTGGCTAATTCCTGATACTATTTTCAAGTCATT
TGGTTCCCTGCTGCAAAACGCCACTCCTTTCAACTCCTCTTTTATCTCAT
ACCGAACATAGTGCTGCCTCAAGAGAAGCAAAGAAAAACGCAACGTACAG
GTAGATCTGAGAGAGGTGAGGGAATGGATAGATAGATGCTGTGCACCCTG
CGCCGATGCTCTTGAACGGCGCCACAGAACCGTACAGTACGAGATTCGGT
ATGCACGTCGAAGGCGTTTGCGTGCACGGACTCTCAAGATGTTACGCCAA
GCTGCAGCCCCGTTGTCGAGAACGGCATTTCCGGGAGGAAAACGCGAAGG
CAGGAGCTTATTTTTGAGGTTGACATACTTCGAATTTAGAAATACGAGAG
CTTCGAGGATCGCTTGGGAACTTGGTGTTGTGTTGATTACGACTGTGAGG
GGCTGTTGTTTACAATGTTGGCTTCGGACAAGCGGTTGAGACTGTGCGAT
CTGACGGTGTCCGAGCGATGTAGCAACGGCACTTGTTTGTCAACCCTGCC
TGATTGACTGCCACCACCCAGGGCCTCCGGTGTGTGCTGTGGTGCACGGC
TGGGACTGCGGCGTAGAGGCGAGGCGTTTATTGCTCGGAACTCGAGGAGG
GGTATCTGGTGTACCAGCGGAAGTAATTTGCACAGCGGAGGTGGGAGAGG
ACCTGTTCCAGTTCGTAAGATGGTGAGTGCAGAGCATGTTGTGCATTTGT
GTGGCCATCGTGCGCGGAACCCTTGGAGATATGTCGGAAATTCAACGTTT
TTTGGTGTTTCCATGCCCAGGAGTCGAACGTTTTGCAGCCCCGGTTATTT
GTGGTGGGCGATGGGGGTTGGGGTAGGACACACAAATTTGAGGTGCATCT
TTTGGATCGTTTCATATTTGACCACAACTTGCAAGCTCGTGGGAGTTGGA
TGACGCAGTACGTTATTTGCTGTTCGTGATATTCTTCCGCGAGTTTGTTG
TCCCCTCATATTAGCCGTCGCTGGTCGTGTTTTCTCTGGTGCCCCGGCAA
TCTTTGCGCGCACCTGCAGGCAGCTGTTGTCAGGAGCCACGACCGAGCAG
GTACAGAAGGGGCTAGATGATCTTTTTGCCCCCTTCCACGAAGTGGGAGC
GGTTAAGATTTAGACGCCGAAAGGTAAACTTGCTACAAACCCTCGGAAAA
TCATGTGGGACGAATCGTGGGGGTTGTTTGGGTATCGTGTCTTCACAGCC
GCGGCTTAAGTGAAGGGTTGCTTTGGGCTGCTCGTCAGCAGCTTTTTGTT
GTTTGCCTGAGAGACGTTCAAGGCGTTGGGTCACAAAGAGCCAGGAGACA
CAAGTGCCAAATAGAGTCACAGTTACCGGTAGGGTCATTCAGATGGATTA
GCGCAACGGATCATCGTTGCATGCGTGTGGTCCGCCGGAGATTTTTGCTG
CATGCAGCATGCAGCATCGAGAATTTCGTCGAATTCCAAAGTGAAAATTA
CAAACGTTGAAGTGATGTATCACCGTACTGCGGAACACTCCCTGTACGTG
CGGAACATCTACGGTGCAGTGTTGCGTTTGGCTTCCTCAATGCGCCCAAA
AAAGTGTACTGTAGCTGTCTCGAGGGGCTGTGCACGTTTGAAGGCGAAAG
CTCCGTCGAGGCATGTTCTGTTGTCGAGGTCTCCTAATGGCAATATCCAT
TCACCACGTTATCATTCGGCGCGTGCCGGATGAGCAAAAGCAACATCTGG
GAATTTGAAATGTTTGGATGTCTGTCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig75:436030..443256+

>mRNA_P-littoralis_Contig75.136.2 ID=mRNA_P-littoralis_Contig75.136.2|Name=mRNA_P-littoralis_Contig75.136.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2055bp|location=Sequence derived from alignment at P-littoralis_Contig75:436030..443256+ (Pylaiella littoralis U1_48)
ATGGAATGGCGAGACCTTGAGGTATGGCGAAGACAGCGGTCGTACGTAGG
GGCGGAGCTTCGGAAGGACGCCCCAGACCACGTGGCTCGTCTTGGCCTCG
CCACCAGCTTCGTGTTCGTGGCAGGCATGGCGGAGGGCGCTAGGGTCTCT
GCCCTGAAAGGGGATCTTAAGTTTCCAATCAGGTATGCAGTGTATAACGT
CATCCCTAGCTTCGTGGGAGGAAAGGTGCCAGCGTCGAGCGTGGCTGCTG
CCATGGCCAGCCCCCCGCCCCTTCGAGCGTGCACGAGGGCAGCCGCGCAC
GCCGCGAACCTGCGGGCCTTGCGAACGGCCGTTGCTGGGTACACGGTACT
CAGTATTGTGTTTCAGGTCGCCCTCGCGGGAGGCAAGGGAACGGACGCCT
ACCAACAGGCGGTGGCTGAGGGGTTCGAGGTGCCGAGTATGTCTACCAGT
GATTTCAGCGGGAGCGATGGGAGCGCGGGAGGCGTGGTGCGGCTGTGTGG
GGCCAGGGGATTAGAACCCGCATTAAAAGCGGCGGTGGCAGGTCGGGGGG
GATACCGGACACCCATCCTACCGGTAGTAATTTCGGGCGTTGGGTCTGGC
CCATCGGGACATACCAGCAGCGATGGAAATCTGATCAGCCGAGCGGCGTC
TTCTCTGCCCGCGGGGGCGCTTTCGGCCGTCGTAGAGCGCTCCCCTCGCC
CTTGCTACCACCGAATAGACCATGACCGGCTGTTCTGCCGTGAAGCGTGG
CAACCGGTTGCGGCAGAGGCTGCCGAGGTGGGGGTTAACTCGAATGACCG
TGAAATAGTACTAGTTTTAGAGGCGGACAGTTTGTCTTCCGATGTCCCTC
AGACTCTCATGTCGTCTCCTGTAAAAGTGGCGGCGGTGGCAGGGTTATGC
CGCGGTGGTGGGAGCGGTGCTGGCGGCGGGCTGGGAAAAGATGAGGCAGT
ATGGGGATTAGCGATGCTACGGAAAGTGCTTGAGGAGAACAGAGAGCGGG
ATGGTGGAAGGGTGGCGGGTGTGCTACTGGCGGAAAGACGCTTGATCGAC
GTGGAGGGGTCGACGACGGTGAGCATAAACGCGAGGGCAGCGCTGCTGTT
GTCGGTGTTGTCTTGGGCGCAGCAGTGCTCGGCGGAATTCGTTGCGCATG
GCGCTGGAGCATCATCAGACGGTCATATACCATCTGCAGGCGATGAAACG
GGGGCGAGCACTGCCGAGACGACAGCCACAATGACCCCAGAAGATGACAC
CGCAGGCCGGGCTGTAGCGAGACATGTTGCGGAAGTAGAACCCGCCGTGG
TAAACACGGCAGATGGCGTTGATGAGGAGCTGGGGGCTGATGGTGAGGCT
GTTGGGGAGAATACCTCTGGAGCTGAAGAGCATGCTACCCCACCAGACGG
CGAGCCACGAGTGGCATCAGCCAACACGGCGGCGAGGATTCTGGGGGGGC
TCGAGCACATAGGACGCGGTGTTCGGGTTGTCATTGCGCCGATTGGACAG
CTCCGGTCCGCGATAGGTCGCCCGCTAGGCGTTTTGTCAGCGTGGGTCAA
GGAGAAAGGGAGAAGAGTCGCCCTCCCTGATGCGGGAGTGGCAGCAAACC
GGGTGTTGTTCTACGACACAGATGACAATGAATCTTTCCGTTGGCTAGCT
GCGCAGATGCTCAAGACGGGTTGGACAGTGAAGAGGATAGGCTCTGAGCC
GCTTCCGAAGATGCCCGCTGCTATTTCTGACGTCCCCGTTTTAGTACACC
ACTGCAGCGATGAGAAAACGCTGACCGCTGCTGCTGGGCACCTTTCTCGA
GACGACAACGGGCCTCCGGTGTGTGCTGTGGTGCACGGCTGGGACTGCGG
CGTAGAGGCGAGGCGTTTATTGCTCGGAACTCGAGGAGGGGTATCTGGTG
TACCAGCGGAAGTAATTTGCACAGCGGAGGTGGGAGAGGACCTGTTCCAG
TTCGTAAGATGGCAGCTGTTGTCAGGAGCCACGACCGAGCAGGTACAGAA
GGGGCTAGATGATCTTTTTGCCCCCTTCCACGAAGTGGGAGCGGTTAAGA
TTTAG
back to top