mRNA_P-littoralis_Contig75.112.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.112.1
Unique NamemRNA_P-littoralis_Contig75.112.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:356996..358020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size462
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_006200.1
Cds size462
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791549.3581636-CDS-P-littoralis_Contig75:356995..3571291680791549.3581636-CDS-P-littoralis_Contig75:356995..357129Pylaiella littoralis U1_48CDSP-littoralis_Contig75 356996..357129 +
1680791549.373969-CDS-P-littoralis_Contig75:357366..3575521680791549.373969-CDS-P-littoralis_Contig75:357366..357552Pylaiella littoralis U1_48CDSP-littoralis_Contig75 357367..357552 +
1680791549.3845723-CDS-P-littoralis_Contig75:357878..3580201680791549.3845723-CDS-P-littoralis_Contig75:357878..358020Pylaiella littoralis U1_48CDSP-littoralis_Contig75 357879..358020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.112.1prot_P-littoralis_Contig75.112.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 356996..358020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.112.1

>prot_P-littoralis_Contig75.112.1 ID=prot_P-littoralis_Contig75.112.1|Name=mRNA_P-littoralis_Contig75.112.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
MYSLRTQEKLDAERSQNSSRQILWKNLNDKRKSGRMVRRIYSKTREEMAE
SCRIRCREWIDNASKDVKSWVREPQPSVFQHTFRDRQPEAEIGPSNGHVS
GRKYVPRLAFTGGGELDKEKTADLMETLLEPSRMRGNDPTALQNPCRPSV
IITD
back to top

mRNA from alignment at P-littoralis_Contig75:356996..358020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.112.1 ID=mRNA_P-littoralis_Contig75.112.1|Name=mRNA_P-littoralis_Contig75.112.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1025bp|location=Sequence derived from alignment at P-littoralis_Contig75:356996..358020+ (Pylaiella littoralis U1_48)
ATGTATTCTTTGAGAACCCAGGAGAAGCTGGATGCTGAACGCAGCCAAAA
TTCATCGCGTCAAATTCTATGGAAGAACCTGAACGACAAGAGGAAGTCCG
GCCGCATGGTGCGCCGAATCTACAGCAAGACTAGGTGTGAAGTGTGGTTG
CACCTGTTGCATCACTCAGCGGTCAAATGGGGATTTATATCTATGTGGAT
TTCGGATGACCACCTTAGTTCCAGAATGAGGTTGTGCATTTGGTTGCAAG
ACATCGCCATGAAACCAGAGTCTCACCAAAAGCTACGGCCACCTTCACGT
GTGCCCCCATGCAATAATTTCTCACGTCCCACGTTTCAACGATCTCGGTT
GGGTTGAGTGCTCGTGAATAGGGAAGAAATGGCGGAGTCTTGCCGAATAA
GGTGCCGTGAGTGGATTGATAACGCCAGCAAAGACGTGAAGAGCTGGGTG
AGAGAACCGCAGCCGTCGGTGTTCCAGCATACCTTCCGCGACAGGCAGCC
AGAGGCGGAGATCGGCCCATCGAACGGGCATGTATCGGGCCGTAAATACG
TACCAAGGTGATTTGTGCTCCCTGTGTTATATCGGAACAACGTGGTCTTG
CTTGGTCGAAGAAGCAACAGGCGCATCGGCTGTCTCGTACTGTCTCGTAC
TGCTGTACTCGCACACACAACTCGAACTTGTATGATAAGTTGATTTTGAG
TTATTTGGAGGGCGCCGTGGACTCTCTTTAATTTATAGCATACAGGTGAG
ATGTGGACGAACACCGATCCATGAGGTAAAGATAGCTATAAAACACACGT
CGCGATGAGCAGTACCTATTCGAGGATACTCCTCACCCAAAACCAAGAGA
CTGCACTGGTATATGGATGCCTCTCTTGCGCAGATTGGCCTTTACCGGAG
GCGGTGAACTTGACAAGGAGAAAACAGCAGACCTAATGGAGACGCTATTG
GAACCGAGCCGGATGCGGGGCAACGATCCGACCGCGTTGCAGAACCCTTG
CCGTCCTTCAGTGATCATCACCGAT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig75:356996..358020+

>mRNA_P-littoralis_Contig75.112.1 ID=mRNA_P-littoralis_Contig75.112.1|Name=mRNA_P-littoralis_Contig75.112.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig75:356996..358020+ (Pylaiella littoralis U1_48)
ATGTATTCTTTGAGAACCCAGGAGAAGCTGGATGCTGAACGCAGCCAAAA
TTCATCGCGTCAAATTCTATGGAAGAACCTGAACGACAAGAGGAAGTCCG
GCCGCATGGTGCGCCGAATCTACAGCAAGACTAGGGAAGAAATGGCGGAG
TCTTGCCGAATAAGGTGCCGTGAGTGGATTGATAACGCCAGCAAAGACGT
GAAGAGCTGGGTGAGAGAACCGCAGCCGTCGGTGTTCCAGCATACCTTCC
GCGACAGGCAGCCAGAGGCGGAGATCGGCCCATCGAACGGGCATGTATCG
GGCCGTAAATACGTACCAAGATTGGCCTTTACCGGAGGCGGTGAACTTGA
CAAGGAGAAAACAGCAGACCTAATGGAGACGCTATTGGAACCGAGCCGGA
TGCGGGGCAACGATCCGACCGCGTTGCAGAACCCTTGCCGTCCTTCAGTG
ATCATCACCGAT
back to top