mRNA_P-littoralis_Contig119.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig119.8.1
Unique NamemRNA_P-littoralis_Contig119.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig119.8.1 vs. uniprot
Match: A0A6H5K7H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7H6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.750e-10
Identity = 32/79 (40.51%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    4 VYKRQFFRAALSAKIGGQFQGN-EVLPPVGDPNI-TEEELHRNFTAEQLQRGFDALHFLSSALVNSSDQAILDKHSTAK 234
            ++++ F +AA +  + GQF+G+ E   PVGDPN+ T E L R +T  ++QRG  A HF+++A+V  +D+AI+   ++AK
Sbjct:  495 LWRKSFIQAAKTIDLDGQFKGDAESSIPVGDPNLPTSELLRRGYTRAEVQRGLQAFHFITTAVVKEADKAIISNCTSAK 573          
BLAST of mRNA_P-littoralis_Contig119.8.1 vs. uniprot
Match: A0A6H5JMU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.380e-10
Identity = 32/78 (41.03%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    7 YKRQFFRAALSAKIGGQFQGN-EVLPPVGDPNITEEELHR-NFTAEQLQRGFDALHFLSSALVNSSDQAILDKHSTAK 234
            +++   +AA +A + GQ  GN E   PVG+PN+   EL+R  +T++++Q GF A HF+++A+V ++D+AI+ K  TAK
Sbjct:   23 WRKSLIQAAKTAGLDGQLIGNNERHAPVGNPNVPSSELYRLQYTSDEVQSGFQAFHFVTTAIVRAADKAIVSKCETAK 100          
BLAST of mRNA_P-littoralis_Contig119.8.1 vs. uniprot
Match: A0A6H5KNA4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 6.490e-10
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    7 YKRQFFRAALSAKIGGQFQGN-EVLPPVGDPNITEEELHR-NFTAEQLQRGFDALHFLSSALVNSSDQAILDKHSTAK 234
            +++   +AA +  + GQ  GN E   PVG+PN+   EL+R  +T++++QRG  A HF+++A+V  +D+AI++K  TAK
Sbjct:  178 WRKSLIQAAKTVGLDGQLIGNNERHAPVGNPNVPSSELYRLQYTSDEVQRGLQAFHFVTTAIVREADKAIVNKCETAK 255          
BLAST of mRNA_P-littoralis_Contig119.8.1 vs. uniprot
Match: A0A6H5K2R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R0_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.550e-9
Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    7 YKRQFFRAALSAKIGGQFQG-NEVLPPVGDPNITEEELHR-NFTAEQLQRGFDALHFLSSALVNSSDQAILDKHSTAK 234
            +++   +AA +  + GQ  G NE   PVG+PN+   EL+R  +T++++QRG  A HF+++A+V  +D AI++K  TAK
Sbjct:  132 WRKSLIQAAKTVGLDGQVIGYNERHAPVGNPNVPSSELYRLQYTSDEVQRGLQAFHFVTTAIVREADMAIVNKCETAK 209          
BLAST of mRNA_P-littoralis_Contig119.8.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.550e-9
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    7 YKRQFFRAALSAKIGGQFQGN-EVLPPVGDPNITEEEL-HRNFTAEQLQRGFDALHFLSSALVNSSDQAILDKHSTAK 234
            +++ F +AA +  + GQF G  E   PVGDPN+   EL HR  T  ++QRG  A HF+++A+V  +D+AI+   ++AK
Sbjct:  179 WRKSFIKAAKTIDLDGQFIGGAESNIPVGDPNLPPSELLHRGHTRAEVQRGLQAFHFITTAVVKEADKAIISNCTSAK 256          
BLAST of mRNA_P-littoralis_Contig119.8.1 vs. uniprot
Match: A0A6H5KX24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX24_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.560e-9
Identity = 32/77 (41.56%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   10 KRQFFRAALSAKIGGQFQGN-EVLPPVGDPNITEEELHR-NFTAEQLQRGFDALHFLSSALVNSSDQAILDKHSTAK 234
            ++   +AA +A + GQ  GN E   PVG+PN+   EL+R  +T++ +QRG  A HF+++A+V  +D+AI++K  TAK
Sbjct:   24 RKSLIQAAKTAGLDGQLIGNNERHAPVGNPNVPSSELYRLQYTSDVVQRGLQAFHFVTTAIVREADKAIVNKCETAK 100          
BLAST of mRNA_P-littoralis_Contig119.8.1 vs. uniprot
Match: A0A6H5JVJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVJ7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.990e-9
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   34 LSAKIGGQFQGN-EVLPPVGDPNITEEELHR-NFTAEQLQRGFDALHFLSSALVNSSDQAILDKHSTAK 234
             S+++ GQ  GN E   PVG+PN+   EL+R  +T+E++QRG  A HF+S+A+V  +D+AI++K  TA+
Sbjct:   94 FSSRLDGQLIGNNERHAPVGNPNVRSSELYRLEYTSEEVQRGLQAFHFVSTAIVREADKAIVNKCETAE 162          
BLAST of mRNA_P-littoralis_Contig119.8.1 vs. uniprot
Match: A0A6H5JEF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF0_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.040e-9
Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   10 KRQFFRAALSAKIGGQFQGN-EVLPPVGDPNI-TEEELHRNFTAEQLQRGFDALHFLSSALVNSSDQAILDKHSTAK 234
            ++ F +AA +  + GQF G+ E   PVGDPN+ T E L R +T  ++QRG  A HF+++A+V  +D+AI+   ++AK
Sbjct:  181 RKSFIQAAKTIDLDGQFIGDAESSIPVGDPNLPTSELLRRGYTRAEVQRGLQAFHFITTAVVKEADKAIISNCTSAK 257          
BLAST of mRNA_P-littoralis_Contig119.8.1 vs. uniprot
Match: A0A6H5JVR2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.110e-9
Identity = 30/78 (38.46%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    7 YKRQFFRAALSAKIGGQFQGN-EVLPPVGDPNITEEELHR-NFTAEQLQRGFDALHFLSSALVNSSDQAILDKHSTAK 234
            +++   +AA +  + GQ  GN E   PVG+PN+   EL+R  +T++++QRG  A HF+++A+V  +D+ I++K  TAK
Sbjct:  192 WRKSLIQAAKTVGLDGQLIGNNERHAPVGNPNVPSSELYRLQYTSDEVQRGLQAFHFVTTAIVREADKGIMNKCETAK 269          
BLAST of mRNA_P-littoralis_Contig119.8.1 vs. uniprot
Match: A0A6H5L8L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8L1_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.300e-9
Identity = 29/79 (36.71%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    4 VYKRQFFRAALSAKIGGQFQGNEVL-PPVGDPNITEEELHR-NFTAEQLQRGFDALHFLSSALVNSSDQAILDKHSTAK 234
            +++    +AA +  + GQ  GN     PVG+PN+   EL+R  +T++++QRG  A HF+++A++  +D+AI++K  TAK
Sbjct:  123 LWRTSLMQAAKTVGLDGQLIGNTGRHAPVGNPNVPSSELYRLQYTSDEVQRGLQAFHFVTTAIIREADKAIVNKCETAK 201          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig119.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7H6_9PHAE1.750e-1040.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMU6_9PHAE2.380e-1041.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNA4_9PHAE6.490e-1039.74Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K2R0_9PHAE1.550e-939.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3E0_9PHAE1.550e-941.03Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KX24_9PHAE1.560e-941.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVJ7_9PHAE1.990e-944.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF0_9PHAE2.040e-941.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVR2_9PHAE2.110e-938.46Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L8L1_9PHAE3.300e-936.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig119contigP-littoralis_Contig119:59512..59748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size239
Hectar predicted targeting categoryother localisation
Exons1
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789498.6880283-CDS-P-littoralis_Contig119:59511..597481680789498.6880283-CDS-P-littoralis_Contig119:59511..59748Pylaiella littoralis U1_48CDSP-littoralis_Contig119 59512..59748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig119.8.1prot_P-littoralis_Contig119.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig119 59512..59748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig119.8.1

>prot_P-littoralis_Contig119.8.1 ID=prot_P-littoralis_Contig119.8.1|Name=mRNA_P-littoralis_Contig119.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=79bp
PVYKRQFFRAALSAKIGGQFQGNEVLPPVGDPNITEEELHRNFTAEQLQR
GFDALHFLSSALVNSSDQAILDKHSTAKA
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mRNA from alignment at P-littoralis_Contig119:59512..59748+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig119.8.1 ID=mRNA_P-littoralis_Contig119.8.1|Name=mRNA_P-littoralis_Contig119.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=237bp|location=Sequence derived from alignment at P-littoralis_Contig119:59512..59748+ (Pylaiella littoralis U1_48)
CCCGTGTACAAGAGGCAGTTCTTCCGAGCCGCTTTGTCTGCTAAAATTGG AGGGCAGTTTCAAGGGAACGAAGTGCTCCCTCCAGTCGGCGATCCTAATA TTACAGAGGAAGAGCTGCACCGAAACTTCACCGCAGAGCAGTTGCAGAGA GGATTTGATGCTTTACACTTTCTTTCTTCAGCTTTGGTGAACAGCTCCGA TCAAGCAATACTCGACAAGCACTCAACTGCAAAGGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig119:59512..59748+

>mRNA_P-littoralis_Contig119.8.1 ID=mRNA_P-littoralis_Contig119.8.1|Name=mRNA_P-littoralis_Contig119.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=237bp|location=Sequence derived from alignment at P-littoralis_Contig119:59512..59748+ (Pylaiella littoralis U1_48)
CCCGTGTACAAGAGGCAGTTCTTCCGAGCCGCTTTGTCTGCTAAAATTGG
AGGGCAGTTTCAAGGGAACGAAGTGCTCCCTCCAGTCGGCGATCCTAATA
TTACAGAGGAAGAGCTGCACCGAAACTTCACCGCAGAGCAGTTGCAGAGA
GGATTTGATGCTTTACACTTTCTTTCTTCAGCTTTGGTGAACAGCTCCGA
TCAAGCAATACTCGACAAGCACTCAACTGCAAAGGCT
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