mRNA_P-littoralis_Contig75.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig75.69.1
Unique NamemRNA_P-littoralis_Contig75.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig75.69.1 vs. uniprot
Match: A0A6H5K5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M0_9PHAE)

HSP 1 Score: 272 bits (695), Expect = 2.480e-90
Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = 2
Query:  182 MSAAGSASQGTKRKNFNVLEREEVLRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLDKLGLKAH-SKAGGRGA 610
            MSAAGSASQGTKRKNFN LEREEV+RHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNL+KLGLKAH S +GGRGA
Sbjct:    1 MSAAGSASQGTKRKNFNALEREEVIRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLEKLGLKAHYSASGGRGA 144          
BLAST of mRNA_P-littoralis_Contig75.69.1 vs. uniprot
Match: A0A6H5KRW0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW0_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 2.210e-63
Identity = 102/136 (75.00%), Postives = 118/136 (86.76%), Query Frame = 2
Query:  182 MSAAGSASQGTKRKNFNVLEREEVLRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLDKLGLKAHS 589
            MSAAGSASQG KRKNFNV EREEV+R+LLA+SEDGV +HG+Y  AAEKYGC W+TIK +W KHE+RE +GDPS YIGN+RKG+SG KGID+E+LR RL +IPLNERTTQRRLAAALGIP+ TL  NL  LGL+AHS
Sbjct:    1 MSAAGSASQGLKRKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLRAHS 136          
BLAST of mRNA_P-littoralis_Contig75.69.1 vs. uniprot
Match: A0A6H5KLV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV4_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 6.050e-60
Identity = 100/134 (74.63%), Postives = 116/134 (86.57%), Query Frame = 2
Query:  182 MSAAGSASQGTKRKNFNVLEREEVLRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLDKLGLKA 583
            MSAAGSASQG KRKNFNV EREEV+R+LLA+SEDGV +HG+Y  AAEKYGC W+TIK +W KHE+RE +GDPS YIGN+RKG+SG KGID+E+LR RL +IPLNERTTQRRLAAALGIP+ TL  NL  LGL+A
Sbjct:    1 MSAAGSASQGLKRKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLRA 134          
BLAST of mRNA_P-littoralis_Contig75.69.1 vs. uniprot
Match: A0A6H5L9I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.260e-49
Identity = 86/138 (62.32%), Postives = 107/138 (77.54%), Query Frame = 2
Query:  182 MSAAGSASQGTKRKNFNVLEREEVLRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLDKLGLKAHSKA 595
            MSAAGSASQ  KRKNFN  E+EEV+RHLL  S++GVL +GA++ AAEK+GC W+T K +W +++ +  AG  S  + N R GNSGRKG+ +E+LR RLRDIPLN+RTTQRRLAAAL IP  TL +NL  LGL+AHS A
Sbjct:    1 MSAAGSASQVAKRKNFNNSEKEEVIRHLLTGSKNGVLPYGAFKAAAEKFGCHWETNKRLWRRYDTQHKAGVSSPQLANRRNGNSGRKGVPIEELRERLRDIPLNDRTTQRRLAAALEIPLTTLHKNLKALGLRAHSNA 138          
BLAST of mRNA_P-littoralis_Contig75.69.1 vs. uniprot
Match: A0A6H5KHK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK2_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 5.180e-49
Identity = 88/138 (63.77%), Postives = 107/138 (77.54%), Query Frame = 2
Query:  182 MSAAGSASQGTKRKNFNVLEREEVLRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLDKLGLKAHSKA 595
            M AAGSASQ  KRKNFN  E EEV+R+LL  S++GVLR+GA++EA EK+G  W+TIK +W +++ +  AG  S  I N RKGNSGR+GI LE+L+ R RDIPLNERTTQRRLAAAL IP+ TL RNL  LGL+AHS A
Sbjct:    1 MPAAGSASQVAKRKNFNEEETEEVIRYLLPGSKNGVLRYGAFKEAGEKFGWYWETIKRLWMRYDTQHKAGVASPQIDNRRKGNSGRQGIPLEELKERPRDIPLNERTTQRRLAAALVIPKSTLHRNLKALGLRAHSNA 138          
BLAST of mRNA_P-littoralis_Contig75.69.1 vs. uniprot
Match: A0A6H5KBK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.990e-23
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 2
Query:  347 IKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLDKLGLKAHSKA 595
             K +W ++E +  AG     IGN RKGNSGRKGI +++LR RLRDIPLN+RTTQRRLAAALGI   TLF NL  LGL+AHSKA
Sbjct:   17 FKRLWVRYEAQRKAGVARPKIGNLRKGNSGRKGIPIQELRERLRDIPLNDRTTQRRLAAALGIATTTLFDNLKALGLRAHSKA 99          
BLAST of mRNA_P-littoralis_Contig75.69.1 vs. uniprot
Match: A0A6H5JEL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL2_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 4.560e-21
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 2
Query:  365 KHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLDKLGLKAHSKA 595
            +++ +  AG  S  I N RKGNSGRKGI LE+L+ RLRDIPLN+RTTQRRLAAALGIP+ TL RNL  LGL+AHS A
Sbjct:    2 RYDTQHKAGVASPQIENRRKGNSGRKGIPLEELKERLRDIPLNDRTTQRRLAAALGIPKSTLHRNLKVLGLRAHSNA 78          
BLAST of mRNA_P-littoralis_Contig75.69.1 vs. uniprot
Match: A0A6H5JAZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.590e-18
Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  365 KHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLDKLGLKAHSKA 595
            ++  +  AG  S  I N R GNSGRKGI LE+LR RLRDIPLN RTTQRRLAAALGIP+ TL RN   LGL+AHS A
Sbjct:    2 RYYTQHKAGVASPKIENRRMGNSGRKGIPLEELRERLRDIPLN-RTTQRRLAAALGIPKSTLHRNPKALGLRAHSNA 77          
BLAST of mRNA_P-littoralis_Contig75.69.1 vs. uniprot
Match: A0A6A4ZZT7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZZT7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.810e-12
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 2
Query:  221 KNFNVLEREEVLRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGR-KGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLDKLGLKAHS 589
            K+ N  ER +    LLA S++GVLR+GA+   A+ +GCSW+TI  +WA        G  +A      KGNSG  +    E++   ++ +  ++R T R L     IP+ TL  ++ +  LKA S
Sbjct:   24 KHLNDAERRQAYEMLLAGSDNGVLRYGAFAFTAQHFGCSWRTISRLWASARLSIRDGSLTAVTSTKIKGNSGTTRKRSKEEIELAIKSVAQHDRQTLRSLEVHSSIPKTTLINHMKESKLKAKS 147          
BLAST of mRNA_P-littoralis_Contig75.69.1 vs. uniprot
Match: A0A485KPF4_9STRA (Aste57867_10038 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPF4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.250e-10
Identity = 45/130 (34.62%), Postives = 68/130 (52.31%), Query Frame = 2
Query:  218 RKNFNVLEREEVLRHLLANSEDGVLRH---GAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRK-GIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLDKLGLKAHSKA 595
            R++    ERE ++R +L  S    +     G  Q  A+KY C   T++ V A       AGD +  IGN +KG  GRK     E ++ +L ++PL+ERTT R ++   GIP  +L R L +   +AHS +
Sbjct:    3 RRDLTNEEREAIIREVLLKSNGSYMTRLPKGFGQSLADKYLCGVSTVRKVIALARHSFDAGDMTVCIGNKKKGKVGRKMSYTKEQIKNKLLEVPLSERTTLRSISEKTGIPLGSLHRYLKQGLFRAHSSS 132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig75.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5K5M0_9PHAE2.480e-9095.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRW0_9PHAE2.210e-6375.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLV4_9PHAE6.050e-6074.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9I0_9PHAE1.260e-4962.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHK2_9PHAE5.180e-4963.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBK8_9PHAE1.990e-2365.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEL2_9PHAE4.560e-2167.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAZ0_9PHAE2.590e-1866.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4ZZT7_9STRA3.810e-1234.68Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A485KPF4_9STRA3.250e-1034.62Aste57867_10038 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig75contigP-littoralis_Contig75:265461..266175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4787.PITG_01792T0
Model size715
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.17e-12
EggNOG OGs2CZ3T@1|root,2S88G@2759|Eukaryota,3QCT3@4776|Peronosporales
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791547.5529625-UTR-P-littoralis_Contig75:265460..2656411680791547.5529625-UTR-P-littoralis_Contig75:265460..265641Pylaiella littoralis U1_48UTRP-littoralis_Contig75 265461..265641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791547.5638673-CDS-P-littoralis_Contig75:265641..2661751680791547.5638673-CDS-P-littoralis_Contig75:265641..266175Pylaiella littoralis U1_48CDSP-littoralis_Contig75 265642..266175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig75.69.1prot_P-littoralis_Contig75.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig75 265642..266175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig75.69.1

>prot_P-littoralis_Contig75.69.1 ID=prot_P-littoralis_Contig75.69.1|Name=mRNA_P-littoralis_Contig75.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp
MSAAGSASQGTKRKNFNVLEREEVLRHLLANSEDGVLRHGAYQEAAEKYG
CSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRD
IPLNERTTQRRLAAALGIPQPTLFRNLDKLGLKAHSKAGGRGAAADGGGV
AAGGRGAAAAGGRGAAAGGRGAAAGGRG
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mRNA from alignment at P-littoralis_Contig75:265461..266175+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig75.69.1 ID=mRNA_P-littoralis_Contig75.69.1|Name=mRNA_P-littoralis_Contig75.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=715bp|location=Sequence derived from alignment at P-littoralis_Contig75:265461..266175+ (Pylaiella littoralis U1_48)
GCAGAACTCTTTCCCGAACCGTTTCTTTTGTTGGTTCCACCGCACTGCTG CGCAGCGCGCAGAACCGGGGTCTTTCTGAACACACACCAGCAAGGTGCAG CCCACAGCACCAGACCGCGCCCGATCTCACCACCCCAACTTTGTAGCTCC GGTCAAACACCTTCCCAACTGCTGTTGAGCCATGTCCGCTGCTGGGAGTG CCTCTCAAGGGACGAAACGCAAGAATTTCAACGTTTTGGAGAGAGAAGAG GTGCTTCGCCACCTTCTCGCCAACAGCGAAGACGGGGTACTGCGGCACGG TGCGTATCAGGAAGCCGCGGAGAAGTACGGGTGCAGCTGGAAGACGATAA AGGGAGTGTGGGCGAAGCATGAGCAGCGGGAGGCAGCTGGAGACCCCAGT GCGTACATCGGGAACAACCGCAAGGGCAACAGCGGCAGAAAGGGCATCGA CCTGGAGGACCTGCGTACCCGCCTGCGGGACATTCCGCTGAATGAACGCA CCACACAGCGCCGCTTGGCCGCCGCCCTCGGGATTCCCCAGCCAACGCTG TTCCGCAACCTCGATAAACTTGGCTTGAAAGCACACTCCAAAGCAGGCGG AAGAGGGGCTGCTGCAGACGGAGGAGGGGTTGCTGCAGGCGGACGAGGGG CTGCTGCAGCAGGCGGACGAGGGGCGGCTGCAGGGGGGCGAGGGGCTGCT GCAGGCGGACGAGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig75:265461..266175+

>mRNA_P-littoralis_Contig75.69.1 ID=mRNA_P-littoralis_Contig75.69.1|Name=mRNA_P-littoralis_Contig75.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig75:265461..266175+ (Pylaiella littoralis U1_48)
ATGTCCGCTGCTGGGAGTGCCTCTCAAGGGACGAAACGCAAGAATTTCAA
CGTTTTGGAGAGAGAAGAGGTGCTTCGCCACCTTCTCGCCAACAGCGAAG
ACGGGGTACTGCGGCACGGTGCGTATCAGGAAGCCGCGGAGAAGTACGGG
TGCAGCTGGAAGACGATAAAGGGAGTGTGGGCGAAGCATGAGCAGCGGGA
GGCAGCTGGAGACCCCAGTGCGTACATCGGGAACAACCGCAAGGGCAACA
GCGGCAGAAAGGGCATCGACCTGGAGGACCTGCGTACCCGCCTGCGGGAC
ATTCCGCTGAATGAACGCACCACACAGCGCCGCTTGGCCGCCGCCCTCGG
GATTCCCCAGCCAACGCTGTTCCGCAACCTCGATAAACTTGGCTTGAAAG
CACACTCCAAAGCAGGCGGAAGAGGGGCTGCTGCAGACGGAGGAGGGGTT
GCTGCAGGCGGACGAGGGGCTGCTGCAGCAGGCGGACGAGGGGCGGCTGC
AGGGGGGCGAGGGGCTGCTGCAGGCGGACGAGGG
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