mRNA_P-littoralis_Contig749.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig749.11.1
Unique NamemRNA_P-littoralis_Contig749.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig749.11.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.490e-9
Identity = 40/101 (39.60%), Postives = 50/101 (49.50%), Query Frame = 1
Query:   13 GDCCTATCVKKGFDDCSDGNTYCVDERYRY--------DCDFGDLSETDRGDGYCDLQLNTVYCDYDGGDCCVSTCVSGFYTCSKSEDDFPNCQEPNSDGF 291
            GDCC  +CV     +C      C+D             DCD G L     GDG+CD +LNT  C +DGGDCCV +C      CS S+ D   C +PN+D F
Sbjct:  175 GDCCECSCVDGHDYECGSNGFSCLDPACFDPALVAEFPDCDAGWLG---LGDGFCDSELNTASCGWDGGDCCVCSCNGT--ACSISDFD---CFDPNADEF 267          
BLAST of mRNA_P-littoralis_Contig749.11.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.190e-8
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1
Query:  139 GDGYCDLQLNTVYCDYDGGDCCVSTCVSGFYTCSKSEDDFPNCQEPN 279
            GDG+CD   N   CD+DGGDCC  TCVSG+YTC     D   C++P+
Sbjct:  319 GDGHCDYYNNNEECDWDGGDCCACTCVSGYYTCGYYTFD---CEDPS 362          
BLAST of mRNA_P-littoralis_Contig749.11.1 vs. uniprot
Match: A0A1Z9M6D6_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=bacterium TMED198 TaxID=1986779 RepID=A0A1Z9M6D6_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.050e-7
Identity = 36/97 (37.11%), Postives = 46/97 (47.42%), Query Frame = 1
Query:    7 CVGDCCTATCVKKGFDDCSDG----NTYCVDERY-RYDC--DFGDLSETDRGDGYCDLQLNTVYCDYDGGDCCVSTCVSGFYTCSKSEDDFPNCQEP 276
            C G+C       +G   C DG    N  C +  +   DC  D  D +    GDGYCD   N   C++DGGDCC S+C  G +TCS     F  C +P
Sbjct:  206 CWGNCAEGYEQWQGDGVCDDGQYGVNFLCPEWNFDNGDCIPDANDCNSDMSGDGYCDHVNNNPACEFDGGDCCASSCSDGEFTCSDWVCSFDACHDP 302          
BLAST of mRNA_P-littoralis_Contig749.11.1 vs. uniprot
Match: A0A7S1TXY0_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXY0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.900e-7
Identity = 29/58 (50.00%), Postives = 34/58 (58.62%), Query Frame = 1
Query:  115 GDLSETDRGDGYCDLQLNTVYCDYDGGDCCVSTCVSGF-YTCSKSEDDFPNCQEPNSD 285
            G L ET   DGYCD ++NT  C +DGGDCC  TCVSG  +TC  +     NC  P  D
Sbjct:  489 GGLFETYTADGYCDPEMNTDACGWDGGDCCEQTCVSGSPFTCGVNGY---NCVNPTGD 543          
BLAST of mRNA_P-littoralis_Contig749.11.1 vs. uniprot
Match: A0A6H5JTB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB5_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 8.100e-7
Identity = 38/101 (37.62%), Postives = 47/101 (46.53%), Query Frame = 1
Query:   13 GDCCTATCVKKGFD------DCSDGN----TYCVDERYRYDCDFGDLSETDRGDGYCDLQLNTVYCDYDGGDCCVSTCVSGFYTCSKSEDDFPNCQEPNSD 285
            GDCC  TC+   +       DC D +    T  V   Y Y C+   LS     DG+CD   N   C +DGGDCCV +CV   YTC  +  D   C   +SD
Sbjct:  126 GDCCEETCIDSTYKCGISGYDCWDPDQERKTTEVSPDYTYLCNDIWLS-----DGHCDDDNNVEECSFDGGDCCVDSCVDAKYTCGVTYRD--QCDPQSSD 219          
BLAST of mRNA_P-littoralis_Contig749.11.1 vs. uniprot
Match: A0A7S1VAU7_9EUKA (Hypothetical protein n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1VAU7_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 5.900e-6
Identity = 37/97 (38.14%), Postives = 45/97 (46.39%), Query Frame = 1
Query:   49 FDDCSDGNTYCVDERYRYDCDFG----DLSETDRGDGYCDLQLNTVYCDYDGGDCCVSTCVSGFYTCSKSEDDFPNCQEPNS---------DGFTLA 300
            FD C DG     ++  R   D G     + +   GDG+CDL  N V C +DGGDCCV TC+ G   C  S D  P C  P+          DGF  A
Sbjct: 1263 FDVCGDGVCGASEDVTRCAADCGCNAPGVDKATVGDGFCDL-ANNVPCCWDGGDCCVETCLPGAVGCKGSADALP-CISPSMACVPDDDCPDGFVTA 1357          
BLAST of mRNA_P-littoralis_Contig749.11.1 vs. uniprot
Match: A0A2E8RYL9_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E8RYL9_9DELT)

HSP 1 Score: 52.0 bits (123), Expect = 1.990e-5
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1
Query:  139 GDGYCDLQLNTVYCDYDGGDCCVSTCVSGFYTCSKSEDDFPNCQEPNS 282
            GDG+CD   N+  CD+DGGDCC +TCVS  Y C     D   C++P +
Sbjct:  693 GDGWCDPGNNSASCDWDGGDCCETTCVSEEYPCGVEGYD---CEDPEA 737          
BLAST of mRNA_P-littoralis_Contig749.11.1 vs. uniprot
Match: A0A7S1UGT3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGT3_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.270e-5
Identity = 18/28 (64.29%), Postives = 23/28 (82.14%), Query Frame = 1
Query:  139 GDGYCDLQLNTVYCDYDGGDCCVSTCVS 222
            GDG+CD  LN+V+C+YDGGDCC  TC +
Sbjct:    6 GDGFCDAALNSVHCNYDGGDCCNGTCTA 33          
BLAST of mRNA_P-littoralis_Contig749.11.1 vs. uniprot
Match: A0A7S1XPW9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPW9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 7.110e-5
Identity = 37/112 (33.04%), Postives = 48/112 (42.86%), Query Frame = 1
Query:   13 GDCCTATCVKKGFD-DCSDGNTY------------CVDERYRYDCDFGD-----LSETDR----GDGYCDLQLNTVYCDYDGGDCCVSTCVSGF-YTCSKSEDDFPNCQEPN 279
            GDCC  TC+       C+  N Y            C+D       +F D      S+ D      DG+CD   NT +CD+DGGDCC +TC     Y C   E    NC++ N
Sbjct:  399 GDCCENTCIDPADGGSCAPDNYYACMDPDSEDFISCLDRMVSLQDEFWDSLAVHYSDEDLITFPSDGFCDFVANTPFCDWDGGDCCETTCNPTLNYHCDTWEG---NCRDEN 507          
BLAST of mRNA_P-littoralis_Contig749.11.1 vs. uniprot
Match: D7FX76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX76_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 8.620e-5
Identity = 33/79 (41.77%), Postives = 37/79 (46.84%), Query Frame = 1
Query:   13 GDCCTATC-----VKKGFDDCSDGNTYCVDERYRYDCDFG------DLSETDRGDGYCDLQLNTVYCDYDGGDCCVSTC 216
            GDCC  TC     V+       DG   C D     DC+        D++  D  DGYCD  LNT  C YDGGDCC  TC
Sbjct:  186 GDCCACTCGVDADVEHECGLLGDGYD-CRDPDVPDDCNLANFAQCEDMNGYDWQDGYCDDDLNTPECGYDGGDCCRCTC 263          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig749.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G5Y7_ECTSI2.490e-939.60Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5JVP4_9PHAE5.190e-853.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Z9M6D6_9BACT1.050e-737.11Por_Secre_tail domain-containing protein n=1 Tax=b... [more]
A0A7S1TXY0_9STRA4.900e-750.00Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A6H5JTB5_9PHAE8.100e-737.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1VAU7_9EUKA5.900e-638.14Hypothetical protein n=1 Tax=Sexangularia sp. CB-2... [more]
A0A2E8RYL9_9DELT1.990e-547.92Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A7S1UGT3_9STRA2.270e-564.29Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1XPW9_9STRA7.110e-533.04Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
D7FX76_ECTSI8.620e-541.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig749contigP-littoralis_Contig749:49788..51008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G5Y7
PFAMsBeta_helix,Chlam_PMP
Model size322
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.07e-10
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791544.0393622-CDS-P-littoralis_Contig749:49787..499151680791544.0393622-CDS-P-littoralis_Contig749:49787..49915Pylaiella littoralis U1_48CDSP-littoralis_Contig749 49788..49915 -
1680791544.0515594-CDS-P-littoralis_Contig749:50815..510081680791544.0515594-CDS-P-littoralis_Contig749:50815..51008Pylaiella littoralis U1_48CDSP-littoralis_Contig749 50816..51008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig749.11.1prot_P-littoralis_Contig749.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig749 49788..51008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig749.11.1

>prot_P-littoralis_Contig749.11.1 ID=prot_P-littoralis_Contig749.11.1|Name=mRNA_P-littoralis_Contig749.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
MFCVGDCCTATCVKKGFDDCSDGNTYCVDERYRYDCDFGDLSETDRGDGY
CDLQLNTVYCDYDGGDCCVSTCVSGFYTCSKSEDDFPNCQEPNSDGFTLA
PSLFPLL
back to top

mRNA from alignment at P-littoralis_Contig749:49788..51008-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig749.11.1 ID=mRNA_P-littoralis_Contig749.11.1|Name=mRNA_P-littoralis_Contig749.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1221bp|location=Sequence derived from alignment at P-littoralis_Contig749:49788..51008- (Pylaiella littoralis U1_48)
ATGTTTTGCGTAGGCGACTGTTGCACGGCAACATGTGTAAAAAAAGGTTT CGACGATTGCAGTGATGGGAACACGTACTGCGTGGACGAGCGCTACCGGT ATGACTGCGATTTTGGCGATCTGAGCGAAACCGACCGCGGCGATGGCTAC TGCGACCTCCAGCTAAACACGGTGTACTGCGATTACGACGGCGGTGAGCG CGTTTGGCTTGATGTCCGCACCGGGTGGGGCTCGCCGGGTACCGCTCGAA ACATTGAAACGGAGGCTGTGCATACCGAATCCGAGAGACGTCTTGAGATG TATTGGACTATATCTCAAGATTCTCTCTTCGACAAGAAACAAGGCGGAGG GGGGGGGGGCACGTGATCATTGCTCGCCGTAGTCTTTGGGAGGGTAATAA TGCATCTCAATTGAGGTAGAGCACCGCTCTCATTCCTAGAAGCAGCGCCA GAGTCTCGACATGTTTTCTCGCGATTAAAGTACGCGTCGAACAAACCTTA CTTGTCGTTATCTTTCTGCTTGCACTATTCGCCTTTCAGAGTCAGGGCCT TCCTTTCTGGCCAAGCGTCAATTCTTTAACGCTCCTGGTTCTCCAACAAA ATGGTTTTCGTACATTTCTCCCGTGATGTTTGTGTTCGGCTCCCAGCATG CTGCCTCTTCATTTTACATATTCCCATGGTATGGTCTCAATCAATCGTTT TTTTTTTTTCATTTCTGTAGGCTAACCGAATGTCCATGGCCCCTTGCAAG CTCTATTCCCTCATGCAGGAATGACGATTTTTGGTAACATTTTGGCGTCC TTTTCGCGTATTCCGACGTGGTCTTTCGAGATTTGGCCTTGTTTTCGCAT CCCCTGTTGTAGACTCTTGTACATCTACTGTAGAACCATACACATATTTC TCTCTTCTACCGTTGAGTACAACAGGAGAGGGGGTGGGGGGCCTCGGAAG GAAAATCCCATCTCCCATGTGGCATAGTAGGTCTGAAGTCCACGAGGATA ACCCTTGAGAGAGAATAGTCACACACAAAATCTTGCAACTATATGATACA ACCGCGGTATAAAGTTCGCCTCCAACGCTCGCCATAATTACAGGTGACTG CTGCGTTTCGACGTGTGTTTCGGGCTTCTACACCTGCTCCAAGTCGGAGG ACGACTTCCCGAACTGCCAAGAACCTAACTCCGACGGGTTCACGCTTGCC CCGAGCCTCTTTCCGCTGCTA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig749:49788..51008-

>mRNA_P-littoralis_Contig749.11.1 ID=mRNA_P-littoralis_Contig749.11.1|Name=mRNA_P-littoralis_Contig749.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig749:49788..51008- (Pylaiella littoralis U1_48)
ATGTTTTGCGTAGGCGACTGTTGCACGGCAACATGTGTAAAAAAAGGTTT
CGACGATTGCAGTGATGGGAACACGTACTGCGTGGACGAGCGCTACCGGT
ATGACTGCGATTTTGGCGATCTGAGCGAAACCGACCGCGGCGATGGCTAC
TGCGACCTCCAGCTAAACACGGTGTACTGCGATTACGACGGCGGTGACTG
CTGCGTTTCGACGTGTGTTTCGGGCTTCTACACCTGCTCCAAGTCGGAGG
ACGACTTCCCGAACTGCCAAGAACCTAACTCCGACGGGTTCACGCTTGCC
CCGAGCCTCTTTCCGCTGCTA
back to top