mRNA_P-littoralis_Contig749.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig749.13.1
Unique NamemRNA_P-littoralis_Contig749.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig749.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig749contigP-littoralis_Contig749:70420..71377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size317
Hectar predicted targeting categoryother localisation
Exons3
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791543.6166446-CDS-P-littoralis_Contig749:70421..705031680791543.6166446-CDS-P-littoralis_Contig749:70421..70503Pylaiella littoralis U1_48CDSP-littoralis_Contig749 70422..70503 -
1680791543.6285496-CDS-P-littoralis_Contig749:70922..710091680791543.6285496-CDS-P-littoralis_Contig749:70922..71009Pylaiella littoralis U1_48CDSP-littoralis_Contig749 70923..71009 -
1680791543.640679-CDS-P-littoralis_Contig749:71231..713771680791543.640679-CDS-P-littoralis_Contig749:71231..71377Pylaiella littoralis U1_48CDSP-littoralis_Contig749 71232..71377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig749.13.1prot_P-littoralis_Contig749.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig749 70422..71377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig749.13.1

>prot_P-littoralis_Contig749.13.1 ID=prot_P-littoralis_Contig749.13.1|Name=mRNA_P-littoralis_Contig749.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
QDGSTKVTTEAVHPFHAFKNVQYQLDWTPTPKRRLKRRKDIYNVIGGDRR
LDLDMTKCGDSKYFDSYLDPFNIEVRDGCVEWAYDYDLFNFNYAKDCSLK
VHIVQ
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mRNA from alignment at P-littoralis_Contig749:70420..71377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig749.13.1 ID=mRNA_P-littoralis_Contig749.13.1|Name=mRNA_P-littoralis_Contig749.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=958bp|location=Sequence derived from alignment at P-littoralis_Contig749:70420..71377- (Pylaiella littoralis U1_48)
CAGGATGGGTCTACCAAGGTTACGACAGAGGCAGTGCACCCTTTCCACGC
CTTCAAAAATGTTCAATACCAGCTTGATTGGACCCCAACCCCGAAGAGAC
GGCTGAAGCGCCGGAAAGATATTTACAATGTTATTGGTGGTGACAGGTGA
CTTCTTGATAAGATGTACGCCAAGCCGACAGATACCTTCAGCTGGTGGCA
GCGTCGTTGGAAAACGGAGTGCTGCACTCGTGAACCACGCTAGTAACGAC
TTTTGGTTTCCACAATCGAACAGGCCGCACCATGTCCATCGCCGAGACGC
ATGCGACGTATCGATCTACTTACCAACTTCACCGAATAAATCCGCTGTTC
TTTTCATTGGCTCGTCAGGCGTCTGGACCTGGATATGACAAAGTGCGGGG
ATAGCAAGTACTTTGATTCCTATCTTGACCCGTTCAATATTGAGGTCCGC
GATGGGTGAGTCAAGTGGGACCCAAGCCGCCCCCACTAGCATCGGACGTT
TCGCATTGTGTTGCTTTCCGTGGTCTGTCCACTACATGGGAAAAGTTCTT
GTAACTCACTCCTCTTCGCAGAGTGAAGGAACCGTGACCCCGACACATTA
TCCGACGGTCGGCCTAACACTCGGCTTAAACCTGTGGTATTCCGGATACA
ATCGCTTCGAGGCATCTTTAACTAGCATGAAGTTTCGCCGGGCATTGCTG
CTAAGATTGGCGGTGTGTTGGGAATCGTTGGATGATTCGATGATGTTGTT
TTCTAATCGATCGACAATACACGTTCTGCAAAGCGACGGGGCCCTCAATG
ATTTCTGCGTTTGCGCGGTTTGCTCACCAAACTCCAATATGCGGTTTACA
CTCCTCGACCCCTGCATACTACAGTTGCGTCGAGTGGGCGTACGACTATG
ATCTTTTCAACTTTAACTACGCGAAGGACTGCTCCTTGAAAGTCCACATA
GTTCAAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig749:70420..71377-

>mRNA_P-littoralis_Contig749.13.1 ID=mRNA_P-littoralis_Contig749.13.1|Name=mRNA_P-littoralis_Contig749.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig749:70420..71377- (Pylaiella littoralis U1_48)
CAGGATGGGTCTACCAAGGTTACGACAGAGGCAGTGCACCCTTTCCACGC
CTTCAAAAATGTTCAATACCAGCTTGATTGGACCCCAACCCCGAAGAGAC
GGCTGAAGCGCCGGAAAGATATTTACAATGTTATTGGTGGTGACAGGCGT
CTGGACCTGGATATGACAAAGTGCGGGGATAGCAAGTACTTTGATTCCTA
TCTTGACCCGTTCAATATTGAGGTCCGCGATGGTTGCGTCGAGTGGGCGT
ACGACTATGATCTTTTCAACTTTAACTACGCGAAGGACTGCTCCTTGAAA
GTCCACATAGTTCAA
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