mRNA_P-littoralis_Contig748.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig748.11.1
Unique NamemRNA_P-littoralis_Contig748.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig748.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig748contigP-littoralis_Contig748:51004..55619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size675
Hectar predicted targeting categoryother localisation
Exons2
Cds size423
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791542.9523766-UTR-P-littoralis_Contig748:51003..512541680791542.9523766-UTR-P-littoralis_Contig748:51003..51254Pylaiella littoralis U1_48UTRP-littoralis_Contig748 51004..51254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791542.966226-CDS-P-littoralis_Contig748:51254..514161680791542.966226-CDS-P-littoralis_Contig748:51254..51416Pylaiella littoralis U1_48CDSP-littoralis_Contig748 51255..51416 -
1680791542.9768019-CDS-P-littoralis_Contig748:55358..556191680791542.9768019-CDS-P-littoralis_Contig748:55358..55619Pylaiella littoralis U1_48CDSP-littoralis_Contig748 55359..55619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig748.11.1prot_P-littoralis_Contig748.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig748 51255..55619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig748.11.1

>prot_P-littoralis_Contig748.11.1 ID=prot_P-littoralis_Contig748.11.1|Name=mRNA_P-littoralis_Contig748.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
DDDATTPSPVLQTPTTTDDDGPNACGATEEFQISSPAIPEAVGCYQATSV
SFSYPNSTIEVWTADGTASSGQVWVLGNADDGAGDADGWTSLSIFDLSCS
LLGRFCSKVEPLSLVVETPKRLARRYSSSSSCPHVCLVFT*
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mRNA from alignment at P-littoralis_Contig748:51004..55619-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig748.11.1 ID=mRNA_P-littoralis_Contig748.11.1|Name=mRNA_P-littoralis_Contig748.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4616bp|location=Sequence derived from alignment at P-littoralis_Contig748:51004..55619- (Pylaiella littoralis U1_48)
GACGATGACGCGACGACTCCGTCTCCTGTACTCCAAACGCCAACAACGAC
AGACGACGATGGCCCTAACGCTTGCGGGGCTACCGAAGAGTTCCAGATTT
CGTCACCGGCGATCCCGGAGGCGGTGGGGTGTTACCAGGCGACAAGCGTT
TCGTTCTCCTACCCGAATTCCACCATCGAGGTGTGGACCGCCGACGGAAC
TGCCTCCTCTGGGCAGGTCTGGGTACTCGGTAACGCCGACGATGGGGCTG
GAGATGCCGATGTGAGTGTGCCTATCATATCATACGTCATTGGTTGGCTT
CCAGGTTGTTGATCTGATTGAGTGCTCGGGGGCAGACATGCTGCACAGCA
GGAAGGCGCCATGTTGTTTTTTGCGTCATGGCCGAATCGATTGATAGTTG
CCGACACAATCTTCGGTCTCTTTGGCCAAATGTTCGTCCTTTTCGGGTGC
GCACTGATGGGCGTCTGTTCTGTGTCTAGTCGAGCAGCGCTTTGGCACCA
TCCTGCCTTTGGTACACGTTTGCTATACACAGTACATCCCAAGCCTGTGT
ACCCCGAGCGGTTTCGACGGATACTCGAAAAAAATGTGAATGTGGCGAGA
TCGATCGGGTCAAACGTATGTGCAAGTTTCGACACAGGAATTCATATTCT
GCAAGCGCTATCTGGCCGACTCGTTTGCGGGTATTCAAAATCCGATACAT
TCGGTGGCGAGGAAGTATGCCGGAGGAGCTATTGTGTACCCTTCTCGCGA
TACACTGGAGGAAGGCACCGCCGAAGGAGGGTAGGAAAGATCATTAAGGA
ATACCGTCAGTATGGCCCCGGCTGTGCGGATCCAGTTCAACCAGAGAGAG
GCTGAAAGGAGAAAGAGGCATGAGCGTAGGCATTGGCTTGAAATCATGGA
CTGGATTGGATTCACACAGTCAATACATAAAATGAATGACAAATACTACC
ACCCCCAACCATGTGCTTGACTATCATGTTTGAGGTCGACCAGCTCTGTG
TCCGTGTTCGTTGGTGAAAATCGCAGCTCCGTCCTCCTGTGTTGGATACA
CCACGTTTGGAATGCCTTGCCTGCTTGGAGCGCCGACTGCGTCCGGTATT
GTATACATACCCGTTTGCCGCAACATTTGTACCAGATCATTTCGATCGCC
GTCTCATCACGACAATGTGCCACATGTTGGCTTGCCGCCGACTGCGTCCT
GAATTAATCGCCGTGCATCATGACACGTATCGCGGGTGGGCTTCCCGCTG
ACTGCGTCCTCGTTCATGCACTTTCATTACCGAGAAACACCCGTGGACCA
CATCGGTTGTATCACATGTTGGCTTGCCGCGACTGCGTCCTGCATTTTAC
CGTATTTTGTGCCGAAACACCCGTGGACTGCATCGAACAACCATCCTCCA
TGACATTGTACAGGTTGCCTTCCGCTGGTACATTGCGTTTGTGCCGGACG
AGGACGATGAAGACATCGAAGTCTACTGTGCATCGGCAGAGGACGCCGTC
ATGGTTCATCCGGCTCACGCCACATGGACATGTGAGACCACGATGCGGAT
GCGGTGTTTGGGTTCCTTCCAACGTGGTACAAAGTGTGGTGCAGTATGTT
GGAGATCAGAACCGTTTGATGTGAAGAAGCCAGTCACGGCAGCAAAGAGT
AGACAGCTTGGGGGCAAAGCGTAGACATGAGAGCTTGGTTGGTTGATTGA
GAGCTTTTTGGGACTCAACAACAAAGACACTATTGTTAATTTTCGGAAAT
AAATGAAGTGTTCACCCACATAATGCTCAATCAAACAAACGGCATTCGTT
TTGTGATGAACCCAGATCTAGCGCTCTCTACCATGCGGCACATTTGTTTA
TCTAGAGACGCTTGTCCGACACCAGCAAAAAAAGTTCGACGATAGTAGCC
AAAACGATCAGAGTGGACGACGCAACGAAAACCCCGCTAAAACCCTCGTA
CGATGGGCGTCCAGTTTGATTGCCACACAGACGGTTCAATCGATTTGATT
TGCTCTCTGCCCCCGTACCTCTCCTTGATGCGTCCACGTAGCGGCCAATC
ACATGGCCATGGATGTATTGTACAACAATCGGTTTGTTTTAGTGAATGTC
TGCGTCTCAGCTGCATGTAGTTTCTAGGCTTACTTCTTGATGATATTGCT
TCGGCGCCAACATCTTCGGTTCGCGAAGATGGAGGAGAACGGGCGAAGCA
TTGTGAAATCATCAACAGTGCCTACTTTTCCATTTGCAATTTACTCGTGA
GAGTGTTGACGATGGTTGGTTGGTTGTGGTTTTGACGTGATTTGGCGGAA
CACGGTCGTGCAAACAATCTGTATGTTCTTGAACGGTTGGAAACACAGAT
ACGATGAATATATACTTCGTATATATATACTTCGAGTATATGTACGAAGT
ATATAGGCTTGGCTTTGTTTTTGTTTAACTTTCGGATACCCCACGGATGC
ATCGATGGCAGCTTCTTGGCGTTCTTCGCTCTGCACCTCAGTTTTATATT
GAGCTTTTCACAACTCCGTTGACAATCTCATAAAGTTTGACTCTTAAATG
AAGTATCTGATGGACGCCCCCAAAATATTACCACAAAATGTCATACGCAG
AATAAAACCTCAAACGCAGAACAGAACACTGACCACACTCCTCCACCACC
GATCACCCGTTAGCCACGAAGCATACGCCCCCCAGCCTCTCCCGCACTAT
GTGTGTACGACTAAGTGGTTGTAATCCCATCTATTCTGGAGTCCAGTCTA
CCTCGAAAAAATTGCCGTCAAATACTTCTGAATCAGTACATTTTTTCCGG
GTGTTTTGTGTGCTGCTGAAAATGTACTGTCTATGCTTGTTTGGGTCGCC
ATGTAATATATTTTCGACGCAGGTGTAAATATTTCGGTGTTGACATGTGT
ACATATACATGTGGGCGCATCAGCCGTGGTTTGCCACGAAGGGTCACGGT
CAACATAGTTGTTTGTGTTTGTTTTGGTGTGTGTCCGGTTGGTTGGTTGT
CATATATCAATATCATAGTAATCCAAGACGACTGATTCCTGTTGGCTGCA
ATACGTAGGGTCGCCGTATATAAGTAGGTACACCGAGATGACTGATACCT
GTTGACTCCGACTACCTCCGCGCCTCCCTCTCTCGCCACCATCATCGCTG
ATTGGTTCACCCTCCTCTTGGGGTGATCTCGATGGGCTTGCCGATCGACC
ACCACGGGTACAAAGCCCCGACAACTATCACACCTCACTTTTTGTTCGTC
CACTTCTACGAACTTCTGCCCCCCCCCGCCCGTACTTACATCGCTTTCCC
TCGTTTCTCCAGGTATATACTCCGGAGTATATACATAAATAGCTGAAAAA
AACCGTCGGTGCCGACGAGGAACGTATCGCGTGGAGCTTCATCACTGGCG
GTGGAATTATGTTTCTGCCACTTATCCGTACAAACGTTCTCCCTGTTGTG
GTAGCCGCCCGCGTCACCCTCCAAACAAAGGGCGCTCGAATCTTTCGCTT
CTTGAGGAGTGTTTGCTTATAACTCGATGTTTTTACTACGATCGACCTTT
TTTTCTGTTTGTTTCGTTCTGTTCCGTTCTATTTCGCTTCACCAACAACG
TCCTGGCCTCTTGGATATTACTAGTTAACATTCGAGAAGGGCCCTGCCCA
TCTGAGACTGGAATGGAGAGATGTAATCATTCCCCGGCAATGTTTCCTCA
CAGTCCGAGAGGGCCGGGGGTTAAAAACACATATCAGATCAAGGTACCAG
GTATAGAAAAACAATGCTTGGTAGCCCCCCACCGAAATATTCCCAGCTCT
GTCAGCTCCAACATATTTTTTGCACCTGTTCTATACATTTCACGCACCAT
ACCACCCACACCACACCACACCACGCCCCACTACACCACACCACACCACA
CCTCACCACACCACACCACACCCATGCCTGCGGGTGGGCCTGTTCGGTTG
CAAACCCCCTTGATCATAAATAGGCGACGTGGACGGCACCGGCTTCGGAG
ACATAACGGATGTGGACTTCTCGGTGGCGTGCGGATGCGGCGGAACTCCC
TCGCCCGCCGGGGCGAATCCAGCGGATACCACTGGCGCAGTTAACACTCG
GACTGTATCTTGGTCGATCGTGGTTGGTGCCGCCGGCCTGGTAAATCTCG
GCATTGCCCTCGCATTGGGAGAGGGGTGAAGATGGTGCGCTCATATAACA
GAGGGGTGGACATCTCTTTCGATTTTCGACTTGAGTTGCTCGTTGCTCGG
TCGGTTTTGTTCGAAAGTGGAGCCTCTCTCTCTCGTGGTGGAAACGCCAA
AACGGTTGGCGCGCCGCTACAGTAGTTCGTCCTCATGTCCACATGTATGT
CTCGTGTTCACGTGACGATCGCTTGGTCGTTGGGGAGTATAAACAGAAGG
GAGAAGGAGGAGATCGTCGGGTGGGTCGGCGGTGGCGGGTTGCGCGTGTG
TTCTTCCTCCACCAGCATCAAGCAAAGAGTGCGCATGCGGCTAGCCTTAC
AGGTGGGGTTGCCACCCCTGTATGCTTGTCGCCACATACATACATGGAGG
ACTCATATCTGAAGGTCTCGCCCCTTCGTGGTTTTGGTGGTGTTGATATT
TATTTATTTTGTTCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig748:51004..55619-

>mRNA_P-littoralis_Contig748.11.1 ID=mRNA_P-littoralis_Contig748.11.1|Name=mRNA_P-littoralis_Contig748.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig748:51004..55619- (Pylaiella littoralis U1_48)
GACGATGACGCGACGACTCCGTCTCCTGTACTCCAAACGCCAACAACGAC
AGACGACGATGGCCCTAACGCTTGCGGGGCTACCGAAGAGTTCCAGATTT
CGTCACCGGCGATCCCGGAGGCGGTGGGGTGTTACCAGGCGACAAGCGTT
TCGTTCTCCTACCCGAATTCCACCATCGAGGTGTGGACCGCCGACGGAAC
TGCCTCCTCTGGGCAGGTCTGGGTACTCGGTAACGCCGACGATGGGGCTG
GAGATGCCGATGGGTGGACATCTCTTTCGATTTTCGACTTGAGTTGCTCG
TTGCTCGGTCGGTTTTGTTCGAAAGTGGAGCCTCTCTCTCTCGTGGTGGA
AACGCCAAAACGGTTGGCGCGCCGCTACAGTAGTTCGTCCTCATGTCCAC
ATGTATGTCTCGTGTTCACGTGA
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