mRNA_P-littoralis_Contig746.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig746.34.1
Unique NamemRNA_P-littoralis_Contig746.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig746.34.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 7.880e-24
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAEPNFSALANLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARLYLGIEATSCQAE NFSALA+LIG LRCNMLPSKVERMMFIRLN
Sbjct:  555 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLN 607
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BLAST of mRNA_P-littoralis_Contig746.34.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 7.990e-24
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAEPNFSALANLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARLYLGIEATSCQAE NFSALA+LIG LRCNMLPSKVERMMFIRLN
Sbjct:  750 MPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLN 802
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BLAST of mRNA_P-littoralis_Contig746.34.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.470e-22
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAEPNFSALANLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARL+LGIEA+SCQAE NFSAL++LIGHLRCNML  KVERMM IRLN
Sbjct:  173 MPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLN 225
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BLAST of mRNA_P-littoralis_Contig746.34.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.030e-21
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAEPNFSALANLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARL+LGIEATSCQAE NFSALA+LIG+LRCNMLP +VERMM IRLN
Sbjct:  447 MPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLN 499
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BLAST of mRNA_P-littoralis_Contig746.34.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 7.550e-21
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAEPNFSALANLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARL+LGIEA+SCQAE NFSAL++LIGHLRCNML  KVERMM IRLN
Sbjct:  738 MPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLN 790
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BLAST of mRNA_P-littoralis_Contig746.34.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.450e-20
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAEPNFSALANLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARL+LGIEATSCQAE NFSALA+LIG  RCNML  +VERMM +RLN
Sbjct:  168 MPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVRLN 220
[Close]
BLAST of mRNA_P-littoralis_Contig746.34.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.460e-20
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAEPNFSALANLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARL+LGIEATSCQAE NFSALA+LIG LRCNML  KVERMM IRLN
Sbjct:  433 MPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLN 485
[Close]
BLAST of mRNA_P-littoralis_Contig746.34.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.930e-20
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAEPNFSALANLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARLYLGIEATSCQAE NFSA ++LIG LRC +LPSK ER MFIRLN
Sbjct:  344 MPYLAFIARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLN 396
[Close]
BLAST of mRNA_P-littoralis_Contig746.34.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.070e-19
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAEPNFSALANLIGHLRCNMLPSKVERMMFIRLN 159
            MPYLAFIARL+LGIEATSCQAE NFSALA+LIG L CNML  +VERMM +RLN
Sbjct:  551 MPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLN 603
[Close]
BLAST of mRNA_P-littoralis_Contig746.34.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.040e-16
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 MPYLAFIARLYLGIEATSCQAEPNFSALANLIGHLRCNMLPSKVERMMFIRLN 159
            +P+LA IARL+ GIE+TSCQAE NFSALA LIG LR +MLP KVER+MF+RLN
Sbjct:  411 LPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLN 463
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig746.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE7.880e-2494.34Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE7.990e-2494.34Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KJT6_9PHAE8.470e-2284.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE2.030e-2186.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE7.550e-2184.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7P7_9PHAE1.450e-2081.13Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE2.460e-2086.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE6.930e-2083.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE8.070e-1981.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE4.040e-1673.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig746contigP-littoralis_Contig746:121603..121761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog6087.XP_004207076.1
PFAMsDimer_Tnp_hAT,zf-BED
Model size159
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.000398
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,39UGB@33154|Opisthokonta
DescriptionBED zinc finger
Cds size159
COG categoryKL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791542.0170102-CDS-P-littoralis_Contig746:121602..1217611680791542.0170102-CDS-P-littoralis_Contig746:121602..121761Pylaiella littoralis U1_48CDSP-littoralis_Contig746 121603..121761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig746.34.1prot_P-littoralis_Contig746.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig746 121603..121761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig746.34.1

>prot_P-littoralis_Contig746.34.1 ID=prot_P-littoralis_Contig746.34.1|Name=mRNA_P-littoralis_Contig746.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MPYLAFIARLYLGIEATSCQAEPNFSALANLIGHLRCNMLPSKVERMMFI
RLN
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mRNA from alignment at P-littoralis_Contig746:121603..121761-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig746.34.1 ID=mRNA_P-littoralis_Contig746.34.1|Name=mRNA_P-littoralis_Contig746.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig746:121603..121761- (Pylaiella littoralis U1_48)
ATGCCCTACCTAGCGTTCATCGCTCGGTTGTACCTCGGGATCGAGGCCAC
CAGCTGTCAGGCGGAACCCAATTTCTCAGCGCTCGCCAACCTGATTGGCC
ACCTACGCTGCAACATGCTTCCAAGCAAGGTGGAGCGCATGATGTTCATC
AGGCTGAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig746:121603..121761-

>mRNA_P-littoralis_Contig746.34.1 ID=mRNA_P-littoralis_Contig746.34.1|Name=mRNA_P-littoralis_Contig746.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig746:121603..121761- (Pylaiella littoralis U1_48)
ATGCCCTACCTAGCGTTCATCGCTCGGTTGTACCTCGGGATCGAGGCCAC
CAGCTGTCAGGCGGAACCCAATTTCTCAGCGCTCGCCAACCTGATTGGCC
ACCTACGCTGCAACATGCTTCCAAGCAAGGTGGAGCGCATGATGTTCATC
AGGCTGAAC
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