mRNA_P-littoralis_Contig746.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig746.13.1
Unique NamemRNA_P-littoralis_Contig746.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig746.13.1 vs. uniprot
Match: D7G1R5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R5_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 6.750e-11
Identity = 53/124 (42.74%), Postives = 72/124 (58.06%), Query Frame = 2 
Query:   11 LAMGLSMLNICDDKVCLESSLAR--RTMHRDVQGRLTFALAAAA---TAPKPPKSTTELVDDALSQCMEQFMFLGERTPDEEEAIFSDKLAARTDLIRAMTALEEDAKWRRTKEVRSVLADVKR 367
            LAM +  L I D  V  +S LAR   T   + +GRL+ ALA      +   P  S TE++D AL+ CMEQ +FL ERT       FSD +A R DL RAM AL ++ K +R  E+R++L DV++
Sbjct:  402 LAMAIQALKIADRAVD-DSRLARSPETTSDNEKGRLSTALAEFTEKMSKAAPRTSATEMMDAALAACMEQLLFLEERTXXXXXXAFSDDVAVRADLGRAMMALNDEKKKKREAEIRAILGDVRK 524
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BLAST of mRNA_P-littoralis_Contig746.13.1 vs. uniprot
Match: A0A6H5K0M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0M8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 9.870e-10
Identity = 52/125 (41.60%), Postives = 72/125 (57.60%), Query Frame = 2 
Query:   11 LAMGLSMLNICDDKVCLESSLAR--RTMHRDVQGRLTFALAAAA---TAPKPPKSTTELVDDALSQCMEQFMFLGERTPDEEEAIFSDKLAARTDLIRAMTALE-EDAKWRRTKEVRSVLADVKR 367
            LAM +  L I + +   +S LA    TM  + Q RL  ALA      +   P  S TE++D AL+ CMEQ +FL ERT  E+E  FSD++A R DL RAM AL  E  K +R  E+R+++  V++
Sbjct:   82 LAMAIQALTIAN-RAADDSRLASSPETMSGNKQERLATALAEYTEEMSMAAPRTSATEMIDAALAACMEQLLFLEERTFAEKETAFSDEVAVRADLGRAMMALNHEKRKRKREAEIRAIIGHVRK 205
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BLAST of mRNA_P-littoralis_Contig746.13.1 vs. uniprot
Match: A0A6H5K947_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K947_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.020e-9
Identity = 52/125 (41.60%), Postives = 72/125 (57.60%), Query Frame = 2 
Query:   11 LAMGLSMLNICDDKVCLESSLAR--RTMHRDVQGRLTFALAAAA---TAPKPPKSTTELVDDALSQCMEQFMFLGERTPDEEEAIFSDKLAARTDLIRAMTALE-EDAKWRRTKEVRSVLADVKR 367
            LAM +  L I + +   +S LA    TM  + Q RL  ALA      +   P  S TE++D AL+ CMEQ +FL ERT  E+E  FSD++A R DL RAM AL  E  K +R  E+R+++  V++
Sbjct:   84 LAMAIQALTIAN-RAADDSRLASSPETMSGNKQERLATALAEYTEEMSMAAPRTSATEMIDAALAACMEQLLFLEERTFAEKETAFSDEVAVRADLGRAMMALNHEKRKRKREAEIRAIIGHVRK 207
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig746.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1R5_ECTSI6.750e-1142.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0M8_9PHAE9.870e-1041.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K947_9PHAE1.020e-941.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig746contigP-littoralis_Contig746:48346..49925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1530
Hectar predicted targeting categoryother localisation
Exons2
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791541.630684-UTR-P-littoralis_Contig746:48345..493941680791541.630684-UTR-P-littoralis_Contig746:48345..49394Pylaiella littoralis U1_48UTRP-littoralis_Contig746 48346..49394 -
1680791541.660433-UTR-P-littoralis_Contig746:49909..499251680791541.660433-UTR-P-littoralis_Contig746:49909..49925Pylaiella littoralis U1_48UTRP-littoralis_Contig746 49910..49925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791541.6412737-CDS-P-littoralis_Contig746:49394..495091680791541.6412737-CDS-P-littoralis_Contig746:49394..49509Pylaiella littoralis U1_48CDSP-littoralis_Contig746 49395..49509 -
1680791541.650767-CDS-P-littoralis_Contig746:49559..499091680791541.650767-CDS-P-littoralis_Contig746:49559..49909Pylaiella littoralis U1_48CDSP-littoralis_Contig746 49560..49909 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig746.13.1prot_P-littoralis_Contig746.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig746 49395..49909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig746.13.1

>prot_P-littoralis_Contig746.13.1 ID=prot_P-littoralis_Contig746.13.1|Name=mRNA_P-littoralis_Contig746.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MGLSMLNICDDKVCLESSLARRTMHRDVQGRLTFALAAAATAPKPPKSTT
ELVDDALSQCMEQFMFLGERTPDEEEAIFSDKLAARTDLIRAMTALEEDA
KWRRTKEVRSVLADVKRAKRAARMGPLVPEEELESWGVVDLVMDTCLANS
AAIG*
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mRNA from alignment at P-littoralis_Contig746:48346..49925-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig746.13.1 ID=mRNA_P-littoralis_Contig746.13.1|Name=mRNA_P-littoralis_Contig746.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1580bp|location=Sequence derived from alignment at P-littoralis_Contig746:48346..49925- (Pylaiella littoralis U1_48)
GGAAAGCATACTTGCTATGGGCTTGTCGATGCTGAACATTTGCGATGACA
AGGTCTGCTTGGAGTCAAGCCTCGCACGGCGGACGATGCACCGTGATGTG
CAGGGGCGACTCACCTTCGCTCTGGCAGCGGCAGCTACCGCCCCGAAGCC
GCCGAAGTCTACCACAGAACTGGTGGACGATGCGCTGTCACAGTGCATGG
AGCAGTTTATGTTCCTAGGCGAGCGCACACCGGACGAAGAGGAGGCCATT
TTCAGCGATAAGCTGGCCGCGCGCACCGACCTCATCAGGGCGATGACAGC
CCTCGAGGAAGATGCGAAGTGGAGGAGGACGAAGGAGGTACGGTCGGTGC
TCGCAGACGTTAAGCGGCGAAGGATGCGCCGAATTCGATCGGGGGCCCTG
TCGAAGGGCAGGGAAGGGCGAAACGCGCCGCGCGCATGGGACCACTTGTC
CCTGAGGAAGAGCTGGAGAGCTGGGGAGTTGTTGACCTTGTGATGGACAC
TTGTCTCGCTAATAGCGCTGCGATTGGGTGAGGTGTGCCCACCCCGCCGT
CACCAACAACCTGTCGGGGTGTCACGTTGACTGTAAAAAAGAGAGGAATG
CTTTGGTTGTTTGGGTCGTCGTAGGCTTGGCTTGACAATGTGTTGCAGGA
AGTCTATTCAGAGGAGAGCGAGGGGTAGGTTGTTCCTGCTGGCGCATGCC
AAGGTGTACAAGAATTCCGTTACAGTACTAGAGTCTTCTCCCCCCGCCCC
CCACACACACGCGTACCGGTTGATAATGCTCGATGTCGACGTAGCTGTAT
CGAAGAGGGAGTTTCCAATACCAAATGATGTGCTTTCGGACAGCTCCAAA
GTAAATATTTGTAACGCCGTCCCTGTCGACGCTGACGCCCCCCAAAATTG
ACCCAGCACAAAACGAAGGTTGAAAGAGGAAACGTTTCGAATATATGTGA
GTGTTTTGGCGGGCGCCAGTAAGGGCGAGGTGTAAGAGGCGGTTGACGTG
TATACTTTTTCCAACCACCCTTTGTTGTTAAGAGAATACGACCTCAACAA
GGTGCCGTAGGGAAAAGAAGGAGGTTGCCCTTTTTGGTGTCGGTGCAAAC
AAACGTGGCTTGGTGTTGGCCGAACGGCCGAACAGAAATTGCTGTATTTA
TTTTATTTTATTTTATTTTATTTTACCGCTCCGACAGCAGCGCTGTTGTT
GCTTTGCTCGTTTTTCAAATGGCTGGCCTTTCTTTTTTAAGTGACCACCT
AGAAGCGTCGTTATGAGCGTGTTTATGTTTCCCTTTGTTTGTCCTCTGCG
TAGTTAGGTGTATAATTCGTGCTGATGACGCGTTGTCCTCTGTCTGTTGA
TGGCGTTGCCCTCATGGAGGGGAGTGTGGGCAGGGTCGTGATGGAAGGGC
GGGCGCTCGTTGTCGTACGTACGAAGTACTGACTCTAGCCGCTTGCGTAA
GTAAGTGTAGACCACGCCCCACAATAATCACAGGTTCCGTCTGTCAGGTG
TTCGGATCGACGTCACGTAGTAGTCACCTTGCGTCTCAGGGTAATATTCC
GTTTTTTTACGACACCCTGGAGGTGCTCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig746:48346..49925-

>mRNA_P-littoralis_Contig746.13.1 ID=mRNA_P-littoralis_Contig746.13.1|Name=mRNA_P-littoralis_Contig746.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig746:48346..49925- (Pylaiella littoralis U1_48)
ATGGGCTTGTCGATGCTGAACATTTGCGATGACAAGGTCTGCTTGGAGTC
AAGCCTCGCACGGCGGACGATGCACCGTGATGTGCAGGGGCGACTCACCT
TCGCTCTGGCAGCGGCAGCTACCGCCCCGAAGCCGCCGAAGTCTACCACA
GAACTGGTGGACGATGCGCTGTCACAGTGCATGGAGCAGTTTATGTTCCT
AGGCGAGCGCACACCGGACGAAGAGGAGGCCATTTTCAGCGATAAGCTGG
CCGCGCGCACCGACCTCATCAGGGCGATGACAGCCCTCGAGGAAGATGCG
AAGTGGAGGAGGACGAAGGAGGTACGGTCGGTGCTCGCAGACGTTAAGCG
GGCGAAACGCGCCGCGCGCATGGGACCACTTGTCCCTGAGGAAGAGCTGG
AGAGCTGGGGAGTTGTTGACCTTGTGATGGACACTTGTCTCGCTAATAGC
GCTGCGATTGGGTGA
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