mRNA_P-littoralis_Contig746.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig746.21.1
Unique NamemRNA_P-littoralis_Contig746.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig746.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig746contigP-littoralis_Contig746:75574..77071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size827
Hectar predicted targeting categoryother localisation
Exons2
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791541.5086322-UTR-P-littoralis_Contig746:75573..757021680791541.5086322-UTR-P-littoralis_Contig746:75573..75702Pylaiella littoralis U1_48UTRP-littoralis_Contig746 75574..75702 -
1680791541.5268824-UTR-P-littoralis_Contig746:76375..765131680791541.5268824-UTR-P-littoralis_Contig746:76375..76513Pylaiella littoralis U1_48UTRP-littoralis_Contig746 76376..76513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791541.541482-CDS-P-littoralis_Contig746:76513..770711680791541.541482-CDS-P-littoralis_Contig746:76513..77071Pylaiella littoralis U1_48CDSP-littoralis_Contig746 76514..77071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig746.21.1prot_P-littoralis_Contig746.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig746 76514..77071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig746.21.1

>prot_P-littoralis_Contig746.21.1 ID=prot_P-littoralis_Contig746.21.1|Name=mRNA_P-littoralis_Contig746.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=186bp
PLLAPLWSYRWTSHHFPSHCKVFPSHSQASPSSRTLHRTHHPFASPPTHR
RGPTSTGLDRFTLSSAGLTRVRLGVTAGARCCRSCASLPLHRTWTPPLFR
EVHFSRPRDFKIWNTDVSGGHETIVRASKVPPPTCVFATKGRELSLIIKQ
ASVIPHPSRSPHQAFRERTLVGRCFHGCRTQRALP*
back to top

mRNA from alignment at P-littoralis_Contig746:75574..77071-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig746.21.1 ID=mRNA_P-littoralis_Contig746.21.1|Name=mRNA_P-littoralis_Contig746.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1498bp|location=Sequence derived from alignment at P-littoralis_Contig746:75574..77071- (Pylaiella littoralis U1_48)
CCACTCCTGGCCCCCCTCTGGTCCTACCGCTGGACTTCCCACCATTTCCC
TTCTCATTGCAAGGTTTTCCCTTCTCATTCCCAGGCTTCGCCGTCTTCTC
GCACCTTGCACCGGACGCACCATCCCTTCGCTTCGCCCCCAACCCACCGC
CGTGGCCCCACCTCCACCGGGCTTGACCGATTTACCCTTTCTTCCGCCGG
CCTCACTCGCGTTCGGCTCGGCGTCACCGCGGGCGCACGCTGCTGCCGCA
GCTGCGCCAGCCTTCCGCTCCACCGCACCTGGACTCCCCCCTTGTTTCGA
GAGGTACACTTTAGTCGACCACGGGATTTTAAAATATGGAACACCGACGT
CTCTGGAGGACATGAAACGATCGTACGGGCATCGAAGGTACCACCTCCAA
CATGTGTTTTTGCAACAAAGGGTCGCGAATTGAGTCTCATTATCAAACAG
GCTTCTGTCATCCCACACCCAAGTCGAAGTCCTCACCAAGCGTTCCGCGA
AAGAACCCTTGTCGGCCGCTGCTTCCACGGCTGCAGAACCCAACGTGCTT
TGCCATAGCCGAGTATCGTAAAAACGGCAGAGTAGATCGGTCCAGGCTGT
GACATGAACATGACAGCGGATGGTCGAAAGCTGCGTTATAAAGCCTCGGT
TACTACAAGACGCTTTTCGCTGTAATCGCAGCCTCTCCCCTACACCGGTA
ATTTAAATTTGGGGAATTTCATCATTTTCGTCACCGGTGCTGCTGTGAAT
TTTGTGCCTACCTGACGGGGGGAGTGTTTCAGTACAAGTGCTTGGGGCGT
TTTTTGTCCCCGATCGTAGACCTCACTCAGGTAAATGGTAAACCTTTTAC
CCGATGGCTAACCAAGCTACTCCGTCATGCTTGGCGCCGACTCGGACAAA
GTCGTGGGTTCGCTCCGACGCTGCTGGAGTTTTCGTCATACGTGCCAGCG
GCCACCATTACCATAAGTCATCTGCTCCAAGGGCTGACTTGGGTGGGCTG
CGCCTTCCTGCCTCCTTTGGTGGGTTTGGACTCCCTGCTTTGACTTCGGA
TGACTTCGGGGATCACTGCCGACACGGGTCGCACATGCCGTAAGCGCTTC
ACCTGACTCATCTGCTCGCCGCTGTTCATCCCCTTCGCCGTCTTCTCCCG
TGGTTATTTTGTCTTTTTCACCGCCCTGGTCTTTGCCGGCCGCCATTGCT
ACGGACACCACCGCCGCCGTTCCTGCCGCCTGTCAGTCTCGGTATCTGCC
ACACTATAATTTGTCTCCTTGGTGCAGCCACGGTGGGTGAAAGTCTTGCT
GAGGACGTCCACCACCCCGTTTTGATGTGTTTCAAGCAGTACTCCGGTGC
CTGCCACGCCATAGCTCGGCCGCTTGGTGCAGCCACGGTGGACCCCGTGC
ACTTCTTGCTGATGACGTCCACCATCCCGTCTGTGGCGTGTGCAAAGCGG
AACCCACCGTCTCGGTACCTGCCACATCATACCTTGGCTGCTTGGTGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig746:75574..77071-

>mRNA_P-littoralis_Contig746.21.1 ID=mRNA_P-littoralis_Contig746.21.1|Name=mRNA_P-littoralis_Contig746.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig746:75574..77071- (Pylaiella littoralis U1_48)
CCACTCCTGGCCCCCCTCTGGTCCTACCGCTGGACTTCCCACCATTTCCC
TTCTCATTGCAAGGTTTTCCCTTCTCATTCCCAGGCTTCGCCGTCTTCTC
GCACCTTGCACCGGACGCACCATCCCTTCGCTTCGCCCCCAACCCACCGC
CGTGGCCCCACCTCCACCGGGCTTGACCGATTTACCCTTTCTTCCGCCGG
CCTCACTCGCGTTCGGCTCGGCGTCACCGCGGGCGCACGCTGCTGCCGCA
GCTGCGCCAGCCTTCCGCTCCACCGCACCTGGACTCCCCCCTTGTTTCGA
GAGGTACACTTTAGTCGACCACGGGATTTTAAAATATGGAACACCGACGT
CTCTGGAGGACATGAAACGATCGTACGGGCATCGAAGGTACCACCTCCAA
CATGTGTTTTTGCAACAAAGGGTCGCGAATTGAGTCTCATTATCAAACAG
GCTTCTGTCATCCCACACCCAAGTCGAAGTCCTCACCAAGCGTTCCGCGA
AAGAACCCTTGTCGGCCGCTGCTTCCACGGCTGCAGAACCCAACGTGCTT
TGCCATAG
back to top