mRNA_P-littoralis_Contig119.97.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig119.97.1
Unique NamemRNA_P-littoralis_Contig119.97.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig119.97.1 vs. uniprot
Match: A0A6H5JSS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSS0_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.980e-6
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1 
Query: 1012 EAGREISDIDRRLGELHDFLRRAKEGG-VGAGA-LPLPP 1122
            EAGREISDIDRRLGELH+FL+RAKEGG VGAG  L LPP
Sbjct:  632 EAGREISDIDRRLGELHEFLKRAKEGGGVGAGLPLALPP 670
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BLAST of mRNA_P-littoralis_Contig119.97.1 vs. uniprot
Match: D7G256_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G256_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 7.040e-5
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 1 
Query: 1012 EAGREISDIDRRLGELHDFLRRAKEGGVGAGA 1107
            EAGREISDIDRRLGELH+FL+RAKEGG G GA
Sbjct:  483 EAGREISDIDRRLGELHEFLKRAKEGG-GVGA 513
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig119.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSS0_9PHAE2.980e-684.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G256_ECTSI7.040e-587.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig119contigP-littoralis_Contig119:492234..494904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2011
Hectar predicted targeting categoryother localisation
Exons3
Cds size1044
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789498.442707-UTR-P-littoralis_Contig119:492233..4926871680789498.442707-UTR-P-littoralis_Contig119:492233..492687Pylaiella littoralis U1_48UTRP-littoralis_Contig119 492234..492687 -
1680789498.4863183-UTR-P-littoralis_Contig119:494391..4949041680789498.4863183-UTR-P-littoralis_Contig119:494391..494904Pylaiella littoralis U1_48UTRP-littoralis_Contig119 494392..494904 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789498.4514234-CDS-P-littoralis_Contig119:492687..4933201680789498.4514234-CDS-P-littoralis_Contig119:492687..493320Pylaiella littoralis U1_48CDSP-littoralis_Contig119 492688..493320 -
1680789498.4601512-CDS-P-littoralis_Contig119:493401..4936111680789498.4601512-CDS-P-littoralis_Contig119:493401..493611Pylaiella littoralis U1_48CDSP-littoralis_Contig119 493402..493611 -
1680789498.4749575-CDS-P-littoralis_Contig119:494190..4943911680789498.4749575-CDS-P-littoralis_Contig119:494190..494391Pylaiella littoralis U1_48CDSP-littoralis_Contig119 494191..494391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig119.97.1prot_P-littoralis_Contig119.97.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig119 492688..494391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig119.97.1

>prot_P-littoralis_Contig119.97.1 ID=prot_P-littoralis_Contig119.97.1|Name=mRNA_P-littoralis_Contig119.97.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=348bp
MSSDHDRDKGRDRDRDRDRDQGGVRNSGFLASSGGSLGGSSSVRSSGTRR
RVELRTPAEEEEEAVRKSQEMRSSLSTLRRSSDNNVGVGVGGGGGIGASM
RSSFRRENGSAGRRRERVTSGVDEPGTTMAAAAAAAAQQQQQQQQQQQQH
RRRSTTGNNSADTEDTEAGREISDIDRRLGELHDFLRRAKEGGVGAGALP
LPPPRSSSPFIATQESETSRYWSSSLVAPPPAASAAAPAADTSPPPAAAA
AATAAAVPSGGDKASLEPPESAATASLLEPRKQRQEESALPPQSPLPAAA
AAGEPSIFMSSNGRDSPQAMMASAGAGGGGARSSSGGDDGVQSWRQG*
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mRNA from alignment at P-littoralis_Contig119:492234..494904-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig119.97.1 ID=mRNA_P-littoralis_Contig119.97.1|Name=mRNA_P-littoralis_Contig119.97.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2671bp|location=Sequence derived from alignment at P-littoralis_Contig119:492234..494904- (Pylaiella littoralis U1_48)
GGGGGGTCAAAGGGGCGACTAGATGCCAAGCACCATGCTGGCCGCGATGA
GCAGGAGGAGGCGGAGAATGGAGAAGGCGGGGTTCGGTACCGTGGTCACC
TCCAAGACGAGAATCGAGGGCGCGCCGGCGGGTGGCACGGGAGAACGGTG
CCTGCCGTGCGCGTTCCCGGGGCGGCCGTCCCGCTTGCTGCTGCTGCCGC
CGCCGCCGCCACGCTGTCGCCCGCGTCGCAGCAGCAGCAGCAGGACGACA
GCGACACGGCGACGGAGTACCACTCGGAGGACGACGCTCGTTACGCCGGG
GATGGGAAAGGGGGTGGCGGTGGCGGCGGCGGTGGCGTTGGTGTCGGCAG
CGGCCTGGCTGCCCCGAGGCACCACGGGCAGCGAGGGGGGAGGGGCAGCG
GCGGTGGCGATGGCGGTGGTGGTGGCGACGATGGCGAAGACTTTTTCGTG
CATCGGTCCGCGGCAGCAGCAGCAGCAACGGCAGCAACAGCAGCAGCAGC
GAGAAGGAGTAGCATGAGCAGCGACCACGATCGTGATAAAGGCAGAGATC
GAGATCGAGATCGAGATCGAGATCAAGGGGGTGTGCGTAATTCAGGATTT
CTGGCAAGCTCTGGGGGGTCGTTGGGGGGCTCGTCGTCTGTGAGATCTTC
GGGGACACGCCGTCGGGTGGAACTTAGGACGCCAGCGGAGGAGGAAGAAG
AGGCTGTGCGAAAGGCAAGGAAACAAGCCCTCCATCATACTGCTGTTGTC
TGCTGTTGTTCATTGATTTCGTTTTCTATTTCTTTTGTGTATTTTTCTGC
GTTCGATTTGAAGAATGAAACATGCGTTGTTTTTTCCATGTTGCAATGAA
AATCTGCTGTAGATTGGTCTTTTGGGGGGGCGGGAGGGTGAGTAACACCT
TGTTTACACATGTTGGAAAATAATGAAATCAATTAGTCCGAGCGTTTTTA
TTCGAGCCTTTCTTTGTGTGTCACTTGATGTGATAACGTTCAATTCGTGC
GCATCTTCTTTTTTTCGAAGTACGTGTACGATAAAAAGCTGTGAGCGGCC
GTTTTTCTTTTAGCAAAGCAGCAGCGTACATGGTGAGGTGGGCATGATTG
CTTTTTTGTGCAAGACGGAACCGATGTTGCTTGTGTTCATGTCGACTGAC
GCGCAGATGTAAACTTACGTTCATGCTCAGAGTACAGTATGACTTCTGGG
TGGAATTTCGGTAGGTGATTAACGTGAACGCGCGCCGTCCCTCATCGAAA
ACCCTCCCTGCGCGCGCGCAAACGGTGTGACGCACGACAACAGTCGCAGG
AGATGAGGTCGTCGTTATCCACACTAAGGAGGAGCAGCGACAACAACGTC
GGAGTCGGGGTTGGAGGCGGCGGCGGCATCGGCGCAAGTATGAGAAGCAG
CTTCCGACGCGAAAACGGGTCGGCAGGACGAAGAAGAGAAAGAGTAACAA
GCGGGGTGGATGAACCGGGCACGACGATGGCTGCGGCGGCGGCTGCGGCT
GCGGCGGAAGAAGGAGAAGAAGAGCCAGAGCGGAATCTCCACTATTCTTT
GGAGACAGAACAGAAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAACACCGGAGGAGATCTACCACCGGAAACAAC
AGCGCGGACACGGAGGACACGGAAGCGGGCCGGGAAATTTCCGACATCGA
CCGGCGTCTCGGCGAGCTGCACGATTTTTTGAGGAGGGCCAAAGAGGGAG
GGGTGGGCGCGGGTGCCCTCCCCCTCCCGCCCCCCCGATCGTCGTCGCCC
TTTATAGCAACACAAGAATCAGAAACATCTCGTTACTGGTCTTCTTCCTT
GGTAGCTCCCCCCCCAGCTGCTTCCGCGGCGGCCCCGGCTGCTGATACTA
GCCCTCCCCCCGCCGCAGCAGCCGCCGCTACCGCCGCTGCCGTCCCTTCC
GGCGGTGACAAGGCGTCGTTGGAGCCGCCGGAGTCTGCGGCGACAGCGTC
GTTGTTGGAGCCGCGGAAACAGCGGCAAGAAGAGTCGGCGTTGCCGCCGC
AATCACCGCTGCCGGCGGCGGCGGCGGCAGGCGAGCCGTCTATTTTTATG
AGCTCGAATGGGAGGGATTCGCCGCAGGCGATGATGGCGTCGGCAGGAGC
AGGAGGAGGAGGAGCACGCAGTAGTAGTGGTGGTGATGATGGTGTACAAA
GCTGGCGGCAGGGTTAGGAAGGGAGGTGGTGCTTGGCATGCGGAGGAGGA
GGCGTAAAAAGAAGATTACTTAATGGTAAAGAATAGGGAGGGTATGTGTG
TGCTGTGACATATGAAAGCCTCTTTTTGAGATGTGTGTAACTTCATTCTT
GAGTGTGTCTCGTGTATGTATGTGTTTTGTGCGCACATGTACTTCCTCGC
GGCTGACTTTCTATTTCTTGCAAAACGCAAAGCTCGGGACCTTTTTTTTT
TCTTGTGAACCATGATACCACTTCTGCACGGTATGTACGCAGAAGATGCC
GTCCATCCATCCGCTGCTTGCTGTGGGGCAACAGTTGGTCCCAACCATAA
AGCGGCGGCGTGGCGCCGGGCGCTACAGCGCGACAGGCGTTTGGTTCTCC
CTTGTCTTGACTTTGTGTGCTTCGTAGACCCTCCACCCGTTCGTTGTGAA
TTCGGGATAAATACAAGCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig119:492234..494904-

>mRNA_P-littoralis_Contig119.97.1 ID=mRNA_P-littoralis_Contig119.97.1|Name=mRNA_P-littoralis_Contig119.97.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1044bp|location=Sequence derived from alignment at P-littoralis_Contig119:492234..494904- (Pylaiella littoralis U1_48)
ATGAGCAGCGACCACGATCGTGATAAAGGCAGAGATCGAGATCGAGATCG
AGATCGAGATCAAGGGGGTGTGCGTAATTCAGGATTTCTGGCAAGCTCTG
GGGGGTCGTTGGGGGGCTCGTCGTCTGTGAGATCTTCGGGGACACGCCGT
CGGGTGGAACTTAGGACGCCAGCGGAGGAGGAAGAAGAGGCTGTGCGAAA
GTCGCAGGAGATGAGGTCGTCGTTATCCACACTAAGGAGGAGCAGCGACA
ACAACGTCGGAGTCGGGGTTGGAGGCGGCGGCGGCATCGGCGCAAGTATG
AGAAGCAGCTTCCGACGCGAAAACGGGTCGGCAGGACGAAGAAGAGAAAG
AGTAACAAGCGGGGTGGATGAACCGGGCACGACGATGGCTGCGGCGGCGG
CTGCGGCTGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAC
CGGAGGAGATCTACCACCGGAAACAACAGCGCGGACACGGAGGACACGGA
AGCGGGCCGGGAAATTTCCGACATCGACCGGCGTCTCGGCGAGCTGCACG
ATTTTTTGAGGAGGGCCAAAGAGGGAGGGGTGGGCGCGGGTGCCCTCCCC
CTCCCGCCCCCCCGATCGTCGTCGCCCTTTATAGCAACACAAGAATCAGA
AACATCTCGTTACTGGTCTTCTTCCTTGGTAGCTCCCCCCCCAGCTGCTT
CCGCGGCGGCCCCGGCTGCTGATACTAGCCCTCCCCCCGCCGCAGCAGCC
GCCGCTACCGCCGCTGCCGTCCCTTCCGGCGGTGACAAGGCGTCGTTGGA
GCCGCCGGAGTCTGCGGCGACAGCGTCGTTGTTGGAGCCGCGGAAACAGC
GGCAAGAAGAGTCGGCGTTGCCGCCGCAATCACCGCTGCCGGCGGCGGCG
GCGGCAGGCGAGCCGTCTATTTTTATGAGCTCGAATGGGAGGGATTCGCC
GCAGGCGATGATGGCGTCGGCAGGAGCAGGAGGAGGAGGAGCACGCAGTA
GTAGTGGTGGTGATGATGGTGTACAAAGCTGGCGGCAGGGTTAG
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