mRNA_P-littoralis_Contig743.30.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig743.30.2
Unique NamemRNA_P-littoralis_Contig743.30.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig743.30.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig743contigP-littoralis_Contig743:100538..104307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1683
Hectar predicted targeting categoryother localisation
Exons5
Cds size741
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig743.30.2prot_P-littoralis_Contig743.30.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig743 101700..104287 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791539.6054199-UTR-P-littoralis_Contig743:100537..1014341680791539.6054199-UTR-P-littoralis_Contig743:100537..101434Pylaiella littoralis U1_48UTRP-littoralis_Contig743 100538..101434 -
1680791539.6517043-UTR-P-littoralis_Contig743:101674..1016991680791539.6517043-UTR-P-littoralis_Contig743:101674..101699Pylaiella littoralis U1_48UTRP-littoralis_Contig743 101675..101699 -
1680791539.7309575-UTR-P-littoralis_Contig743:104287..1043071680791539.7309575-UTR-P-littoralis_Contig743:104287..104307Pylaiella littoralis U1_48UTRP-littoralis_Contig743 104288..104307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791539.663323-CDS-P-littoralis_Contig743:101699..1018131680791539.663323-CDS-P-littoralis_Contig743:101699..101813Pylaiella littoralis U1_48CDSP-littoralis_Contig743 101700..101813 -
1680791539.683563-CDS-P-littoralis_Contig743:102263..1025031680791539.683563-CDS-P-littoralis_Contig743:102263..102503Pylaiella littoralis U1_48CDSP-littoralis_Contig743 102264..102503 -
1680791539.7005851-CDS-P-littoralis_Contig743:103338..1034641680791539.7005851-CDS-P-littoralis_Contig743:103338..103464Pylaiella littoralis U1_48CDSP-littoralis_Contig743 103339..103464 -
1680791539.7186182-CDS-P-littoralis_Contig743:104026..1042871680791539.7186182-CDS-P-littoralis_Contig743:104026..104287Pylaiella littoralis U1_48CDSP-littoralis_Contig743 104027..104287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig743.30.2

>prot_P-littoralis_Contig743.30.2 ID=prot_P-littoralis_Contig743.30.2|Name=mRNA_P-littoralis_Contig743.30.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=247bp
MRFMSLPSSVLSLQADVDEFVGFLRTLVGAKEKDGKQGPTGALAAKIVRE
FRETGDASRHAQLFRGAVVASQINAASRASQSSAAELDTIPNVCEYSAGD
GFDLEPGVALGVQLDLVQERLEDNIVAEAWHNNAARSRAGLPLVAAELPV
ARDMAVRTGGLDHFDLWVKADSLAGQAIATEFKLNRLSGADGAAKRLELL
QAELDSRRGSGPVAGGCPACTLFVLPGKKECPVCFTQVPEGFIYAK*
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mRNA from alignment at P-littoralis_Contig743:100538..104307-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig743.30.2 ID=mRNA_P-littoralis_Contig743.30.2|Name=mRNA_P-littoralis_Contig743.30.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3770bp|location=Sequence derived from alignment at P-littoralis_Contig743:100538..104307- (Pylaiella littoralis U1_48)
CCCTACTGGTATGTAGTTTGATGAGATTCATGTCCCTCCCGTCATCGGTC
CTCTCTTTGCAGGCGGACGTGGATGAGTTTGTGGGTTTCCTCCGGACGCT
CGTTGGAGCGAAGGAGAAGGACGGCAAGCAGGGGCCGACGGGTGCTCTTG
CGGCCAAGATCGTGCGGGAATTTAGGGAGACCGGCGATGCCTCTAGGCAC
GCCCAGCTCTTCCGAGGGGCGGTCGTGGCAAGTCAGATCAACGCGGCCTC
TCGCGCGTCACAGAGCTCCGCCGCTGAGTTGGTGAGCTCAGAGTGTCGAT
TTTTCTCCGTCATCCTTCTCATTCTTCCTTCTGCTGTACGTTGGTTTTTA
TTTGCTTGGCTCTCTTTTTCGTTCCGTCCCGTGTCTTATCTCAGTTGTTG
TTGCTGAGTAGATAATCTCGATGCATGTGTCAGCACGAGCCTTGTTAGTC
CTCCCGTGCTGGTTCTTAGGTAGGTTATAGTTGCTTGGGGCTGGGCATAA
AATCGGTTGGTAAGAGATTCCAAGCAGCGCCCCGTCCCGTCCCTACACGT
CAGCCAGATCCTGCAGTCACGTAACGTGGTTGGACATATATTTTCTCGCT
ACAGCAGTAGTTTCAAGCGAAGGCTTCATCACATTAATTTTCACGAAGAG
AGTTTTGCCCAGTCTTCACAAAGCATGTCCTACATTCATCCTCCATCCCT
GAAACGGGAAACGACCAACCACGGTACTATTCTTGTGGGAGGGCCTAGGG
CACAGAAGGGTATCCTACAGGAATACCTGCCAGACTGCACGCTTTGCGAC
ATTCTACCTCACCCTAGTCTCGTATCACGCATCTTACACCCAGGACACGA
TCCCCAACGTCTGTGAGTATTCCGCCGGTGATGGGTTCGACCTCGAGCCA
GGGGTAGCTCTCGGGGTGCAGCTCGACCTCGTTCAAGAGAGGCTGGAGGA
CAACATTGTCGCCGAAGCTGTGAGTTCATTATCATATCCCTGCCTACCGA
GACGTAGATGGCTATTCTCGTTGGATCGTCCTCCACCCCCCAGCCTAAAT
TCAGAGACGGCTTGTTTGGCAATTGCGCGTGCCAACAGTACCTAGTTGTT
GTTGTCGCTGTTGCTGTTGCTGTTGCTGTTGCTGCTGCTGTTGCTGTTGC
TTCTGTTGCTGCTGTTGCTGTTGTTGCTGTTGCTGGCTTCGGTCGAAGTT
AGAAATAATCTAAGGGCTGCAACATCGTGTGACGGGACACCGCTCCGCAT
TCGGGGTAGACGCTATAGCATGGGTGCAGACCGCTCAAGATATGTCCGAT
GGTATTAGGCTGTGGAGGAGGGGGCTATGTAAGAGGTACGTGGCTGAATT
GGCCATCACGCGTGTAAACGCAACCAACGCGTGCCATGCTAAGGAACGGC
TTGTTGTTCTGCAACAACAACTATCCTCGTGTCGTCTGAACCTTGGTACC
TTGGGGATGCTGTCACGGTGCTCGCTTGGTATCCGTACGTTTTGTGTTGA
TTCATTTTCGTCCCTCGAGTGCTGCTTACAGTATTCTCTTTGCCTTGCCG
ATGCGATGTTTTGTTGTTCCACCTCCGGCCAAATCTTGCTTGTTTACGCG
CGGAAACAACGATTCGAACACTGAGTTGGCACAGCGCATAGAATCTTGCA
CGTGCTTCATGGCGGGTCGGAATGGTCTGTGTACCTCTCTCTTTGGTGTC
TGTCACAAGAAACACAAACACCTAAGTGTATGCTTCTGCATTTCAATGTG
ACGACTGGAATCAACCACACCTCCCCCTTCACCCCGTGCATTGTAAACGT
CAAGTGGCACAACAACGCGGCGAGATCAAGAGCTGGGCTGCCTCTTGTTG
CTGCCGAGCTGCCCGTCGCAAGAGATATGGCGGTCCGGACGGGAGGCCTG
GATCACTTCGACCTATGGGTCAAGGCCGACTCCTTGGCCGGCCAAGCCAT
CGCCACTGAGTTTAAGCTCAATCGCCTCTCGGGCGCCGACGGTGCCGCGA
AACGGCTCGAGCTCCTGCAAGCCGAGCTTGATTCTCGGAGAGGAGTGAGT
GCTGAGCACTTTCGCTCTAAAAACTTACGCTTTACACTGTCTTTCACCTT
CATTACCCGTTGACCTCAACTTCACTACGTGAATTCTCTATGGGAGTACT
GTACCCGTAGTCAGGCAGCTAAGTTCGTAAGGACGCATGCCTTCTCGACC
ATGGTGATGCTTTGTTTTCATATCATCGTGTGTTTGCATGGTGTTGACAC
TTAGGAATAATATTTGCACAAATAGAAAACGCAGACATGTTGATTTCAAT
AGCGTCAAAGTGGGGAAAATGCGGAGCACTAGGCTAGAGCGTGACTTCTG
GCAAGTGGTCGCTTTCAATATTTTCTACTCAGGCTGGTTTCTCTTGTTGT
TGCTGATATTGCCTCGATCGCAACCAACTTTTGTACAAAATCTAATGACA
GCAGCATACACGATAACCCCGTGCTCACCACCCGTCACACGCAGAGTGGC
CCAGTTGCTGGAGGGTGTCCGGCCTGCACGCTTTTTGTTCTCCCTGGGAA
AAAGGAATGCCCTGTGTGCTTCACCCAGGTACCTGAGGGCTTCATCTACG
CTAAGTGAGCGTTCTCGCAGGAAGGAGCTCAAGGTAAGAGCCGCAAGAGA
CGGAATGTCAACAAGTTTAACAACACAGGCGGGCACAACGCCGAAGTATA
GTGCTATTTTGGGAGGCGGTCAACGATCGAGCGCGTGTCGACGAATGTTT
CTGTGTTGACTTTTTCCCAAAACAATATCCTTATTTTATACTCCTTCTCC
CACACCCGTACCACGGAAGTTTCGTTCAATCGTGCCTCTTTTCCCCCCCA
ACCGTGCAATATTTGAATCACAGCAAAACCAAGGAGGATCAGGGTAGAGG
AGCGGGTAGATTTCGTTCGTTGCTGCTGGCGTGCGTGTACGATGGACGAG
CAACCATTAAGTTTGCGTGGTTTGATGAATAGGCTGTGTGTGGCTGTTGG
GGTGCGCACGAGTTGACTCCGTTGGCCCCCCCTCCGGTCTTTCTCTGGTC
CGCCACTTTCAACAGCCTATGTATCGTTCGTCAGGCTAAATTGTATTCGC
CGGGTGTATCGGTGGAAGTTGTGGTCGCGTACCGGTATATTTTATACGTT
CCTGGAAACACGTGTTCGCCGATTGATTCCTTGGTATTTTGTTGGACTGG
TCGCCGTGTTCGCTGGGCCAGTTGTTAGCGGTCGGGAAAGCGGATGTAAA
TCTAGAGCACGCTCTTTTACTAGCGGTGGTCGACGGTTTATTCCGAATCT
TGGTCGGGCTGCTCTTCGGCGGAATGGGTGCTCTGTACTCTGCGGCGCGG
CCTCCTGCGCCAAAACGTAGTACGCGGAGTAGCCGCAGCGGAACATGATA
TAGCAGTAGTCGAGCTTTTGTGGGGTGCTTTCAAATTGGTCAGATATTTA
TTGCACCGAATAATGGGTACGCTGTGTGGCCCCTCGCTGGAAGTCTAGGC
GAACAGTACGCCAACCGTTGCTGACACTGTGTCTTGGGGTGTATTGGAAT
GGAGAGAAGGCGCGATATATCGGTGCGGCATATCCGCAACGAAACCACGG
CTTTGGTGACAACGTATCGTGCGTATGTAGCCAGTGCTGCAGAGGGTGTT
GCCAGCATACCAGCACTACAGAAGGGACGAATTGGGCACCAGGGAATACT
GTACAAGGTTTCAGCTCACCACCTCACTCCACTCGTTTCGACATCAAGCT
TTGCGGTGGTTGTGGCTTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig743:100538..104307-

>mRNA_P-littoralis_Contig743.30.2 ID=mRNA_P-littoralis_Contig743.30.2|Name=mRNA_P-littoralis_Contig743.30.2|organism=Pylaiella littoralis U1_48|type=CDS|length=741bp|location=Sequence derived from alignment at P-littoralis_Contig743:100538..104307- (Pylaiella littoralis U1_48)
ATGAGATTCATGTCCCTCCCGTCATCGGTCCTCTCTTTGCAGGCGGACGT
GGATGAGTTTGTGGGTTTCCTCCGGACGCTCGTTGGAGCGAAGGAGAAGG
ACGGCAAGCAGGGGCCGACGGGTGCTCTTGCGGCCAAGATCGTGCGGGAA
TTTAGGGAGACCGGCGATGCCTCTAGGCACGCCCAGCTCTTCCGAGGGGC
GGTCGTGGCAAGTCAGATCAACGCGGCCTCTCGCGCGTCACAGAGCTCCG
CCGCTGAGTTGGACACGATCCCCAACGTCTGTGAGTATTCCGCCGGTGAT
GGGTTCGACCTCGAGCCAGGGGTAGCTCTCGGGGTGCAGCTCGACCTCGT
TCAAGAGAGGCTGGAGGACAACATTGTCGCCGAAGCTTGGCACAACAACG
CGGCGAGATCAAGAGCTGGGCTGCCTCTTGTTGCTGCCGAGCTGCCCGTC
GCAAGAGATATGGCGGTCCGGACGGGAGGCCTGGATCACTTCGACCTATG
GGTCAAGGCCGACTCCTTGGCCGGCCAAGCCATCGCCACTGAGTTTAAGC
TCAATCGCCTCTCGGGCGCCGACGGTGCCGCGAAACGGCTCGAGCTCCTG
CAAGCCGAGCTTGATTCTCGGAGAGGAAGTGGCCCAGTTGCTGGAGGGTG
TCCGGCCTGCACGCTTTTTGTTCTCCCTGGGAAAAAGGAATGCCCTGTGT
GCTTCACCCAGGTACCTGAGGGCTTCATCTACGCTAAGTGA
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